genome.fa.s10.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  17  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6117894--6118137	87	2.8	84	83	6	310	41	18	10	29	1.84
6118046--6118187	51	2.8	50	83	6	155	41	19	10	28	1.84
6120665--6120743	4	19.0	4	76	14	54	29	1	0	69	0.96
6120945--6121486	62	8.9	61	84	5	688	35	19	11	34	1.87
6120945--6121486	121	4.5	121	88	2	811	35	19	11	34	1.87
6120946--6121486	242	2.2	240	93	2	895	34	19	11	34	1.88
6136152--6136384	129	1.8	129	99	0	457	10	38	30	20	1.86
6143834--6143883	23	2.2	23	85	7	66	40	0	2	58	1.10
6144397--6144651	129	2.0	129	96	0	465	10	36	30	21	1.88
6148848--6148881	2	17.0	2	100	0	68	50	0	0	50	1.00
6148870--6149057	94	2.0	94	97	1	351	37	14	13	34	1.86
6159359--6160524	196	5.9	196	97	0	2107	24	17	18	40	1.91
6166949--6166987	14	2.7	15	84	15	55	0	15	0	84	0.62
6166947--6166994	10	4.8	10	77	10	53	2	14	0	83	0.74
6176005--6176260	47	5.4	47	84	3	291	26	15	33	24	1.95
6175996--6176261	94	2.8	93	86	1	361	26	15	33	24	1.95
6176248--6176367	53	2.3	53	89	0	177	25	17	27	30	1.97
6176854--6177012	31	5.5	31	76	16	151	22	17	24	35	1.95
6176898--6176943	21	2.2	21	96	0	83	17	17	32	32	1.93
6176867--6176971	52	2.0	52	92	0	174	20	16	27	35	1.94
6178660--6178999	156	2.2	156	89	1	502	31	17	19	31	1.95
6179354--6179597	31	7.9	31	80	0	254	24	17	20	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6179354--6179596	62	3.9	62	80	2	281	24	17	20	37	1.93
6179371--6179597	93	2.4	93	82	0	283	24	18	19	37	1.93
6181129--6181208	16	5.0	17	75	14	64	38	6	5	50	1.50
6181174--6181268	38	2.5	37	86	6	136	33	12	5	48	1.64
6181134--6181251	16	7.1	16	67	21	55	38	8	3	49	1.50
6182195--6182475	31	9.1	31	86	1	348	24	16	21	38	1.93
6185938--6185984	21	2.2	21	96	0	85	19	31	17	31	1.94
6186810--6186978	31	5.5	31	81	8	191	39	19	14	26	1.90
6194809--6194859	20	2.4	21	83	9	59	47	0	0	52	1.00
6194812--6194878	24	2.9	23	82	8	73	43	0	1	55	1.09
6194827--6194878	22	2.3	22	86	6	68	40	0	1	57	1.10
6206795--6206827	15	2.1	16	88	5	50	9	0	9	81	0.87
6211317--6211349	15	2.1	16	88	5	50	9	0	9	81	0.87
6217223--6217304	38	2.1	38	86	2	110	37	23	23	15	1.93
6217234--6217310	39	2.0	38	92	2	127	36	23	23	16	1.94
6222448--6222529	27	3.0	28	75	16	75	31	1	1	65	1.08
6222441--6222478	10	3.7	10	86	6	58	34	0	0	65	0.93
6233386--6233493	2	56.5	2	78	14	95	49	0	3	46	1.19
6241612--6241760	60	2.5	60	81	4	158	30	18	21	29	1.97
6245201--6245227	2	13.5	2	100	0	54	51	48	0	0	1.00
6249769--6250179	221	1.9	221	90	2	655	32	20	14	31	1.93
6253212--6253281	26	2.8	25	78	8	79	32	11	28	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6260664--6260697	16	2.1	16	89	10	52	58	14	0	26	1.36
6266478--6266639	42	3.8	42	80	0	153	26	18	33	21	1.96
6266673--6266735	2	30.5	2	87	6	90	46	0	6	47	1.28
6275151--6275276	45	2.8	45	82	0	162	34	22	16	26	1.95
6275306--6275469	29	5.8	29	76	15	121	37	16	15	30	1.90
6278824--6278922	33	3.2	29	71	17	83	62	0	5	32	1.17
6278899--6278984	34	2.6	32	82	8	100	68	0	4	26	1.09
6279202--6279254	15	3.5	15	79	5	63	41	9	1	47	1.47
6280652--6280704	25	2.1	25	96	0	97	26	16	11	45	1.82
6287933--6288010	38	2.1	38	97	0	147	21	16	19	42	1.89
6312938--6313094	80	2.0	80	80	0	179	52	18	6	22	1.68
6321266--6321320	26	2.2	25	83	3	65	36	3	1	58	1.26
6321451--6321529	33	2.4	33	78	0	95	44	12	5	37	1.65
6321592--6321659	30	2.3	30	84	5	93	47	7	11	33	1.68
6322963--6323061	45	2.2	45	94	0	171	29	21	18	31	1.97
6323028--6323081	24	2.2	24	86	0	72	24	16	18	40	1.90
6323035--6323085	24	2.1	24	92	0	84	21	13	19	45	1.85
6322994--6323203	69	3.0	69	81	1	233	30	16	14	38	1.89
6323108--6323156	24	2.0	24	88	0	71	32	8	14	44	1.74
6323130--6323237	45	2.4	45	82	0	135	34	15	12	37	1.85
6323368--6323426	2	29.5	2	100	0	118	49	0	0	50	1.00
6323785--6323935	45	3.4	45	83	3	162	31	14	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6326080--6326126	24	2.0	23	84	15	62	42	0	0	57	0.98
6326058--6326106	26	1.9	25	83	4	62	44	0	2	53	1.12
6326444--6326479	17	2.1	18	89	5	56	55	11	11	22	1.66
6333197--6333276	41	1.9	42	85	7	110	47	0	1	51	1.08
6333180--6333248	31	2.3	30	78	11	72	43	0	0	56	0.99
6338286--6338329	22	2.0	22	82	8	54	20	6	20	52	1.69
6348489--6348535	2	23.5	2	100	0	94	51	0	0	48	1.00
6348654--6348701	2	24.0	2	95	0	87	47	0	2	50	1.12
6348751--6348906	37	4.2	37	89	3	242	25	35	10	28	1.90
6355159--6355183	13	1.9	13	100	0	50	48	8	0	44	1.32
6365468--6365527	30	2.1	29	81	6	68	31	8	21	38	1.83
6371062--6371114	27	2.0	27	88	3	81	73	7	9	9	1.25
6372170--6372270	38	2.6	40	87	3	134	22	40	16	19	1.91
6375570--6375633	27	2.4	27	81	0	74	25	31	20	23	1.98
6376326--6376370	13	3.3	13	87	12	56	75	8	15	0	1.03
6376763--6376860	35	2.7	35	87	3	124	27	4	11	57	1.52
6379741--6379819	39	2.0	40	95	2	142	26	15	25	32	1.95
6381067--6381572	118	4.4	111	85	4	571	17	10	26	44	1.82
6381067--6381500	229	1.9	223	85	3	600	17	10	26	45	1.80
6381277--6381607	118	2.8	118	86	1	297	19	11	26	42	1.85
6387127--6387160	13	2.6	13	90	9	52	76	0	20	2	0.92
6391131--6391175	23	2.0	23	86	0	63	42	26	4	26	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6391722--6391787	26	2.8	23	79	18	73	59	4	12	24	1.52
6391731--6391780	26	1.9	26	95	0	91	60	4	12	24	1.49
6393323--6393423	45	2.2	45	85	0	130	17	28	21	31	1.96
6393401--6393447	24	2.0	24	91	0	76	23	23	19	34	1.97
6394009--6394038	15	1.9	16	93	6	53	76	0	0	23	0.78
6396489--6396518	14	2.1	14	93	0	51	83	6	10	0	0.81
6396608--6396645	15	2.5	15	87	8	51	36	5	10	47	1.61
6396616--6396648	15	2.1	16	94	5	59	39	3	12	45	1.57
6398792--6398875	38	2.3	37	79	6	98	32	13	8	46	1.72
6402760--6402840	25	3.2	25	80	0	90	24	40	9	24	1.85
6405879--6405933	28	2.0	28	92	0	92	23	3	14	58	1.52
6409662--6409779	59	2.0	59	91	0	191	37	22	10	30	1.87
6411161--6411200	19	2.2	18	90	4	62	85	0	10	5	0.75
6412717--6412741	8	3.1	8	100	0	50	72	0	0	28	0.86
6416019--6416286	146	1.8	146	88	0	410	46	4	9	38	1.58
6416992--6417047	2	29.5	2	77	10	55	46	1	1	50	1.22
6417811--6417852	20	2.0	21	90	4	68	47	0	4	47	1.23
6431086--6431139	24	2.2	24	96	0	99	42	7	20	29	1.79
6433261--6433295	16	2.2	16	90	10	54	80	0	2	17	0.84
6433497--6433651	57	2.7	55	87	7	206	66	11	13	8	1.44
6434435--6434491	21	2.6	22	78	10	55	26	1	22	49	1.60
6445600--6445651	2	27.5	2	81	18	67	46	0	1	51	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6445598--6445647	7	6.9	7	93	4	73	46	0	2	52	1.12
6464557--6464604	20	2.4	20	82	6	53	20	2	8	68	1.26
6464576--6464615	20	2.0	21	90	5	64	20	2	7	70	1.24
6469165--6469204	19	2.0	20	90	4	64	17	7	15	60	1.57
6477341--6477375	17	1.9	18	88	11	54	0	22	0	77	0.78
6477339--6477376	20	2.0	20	85	10	53	0	23	0	76	0.79
6487890--6487914	13	1.9	13	100	0	50	52	0	0	48	1.00
6490828--6490861	17	1.9	18	88	5	52	5	26	5	61	1.42
6518808--6518861	26	2.2	25	86	6	74	38	1	5	53	1.35
6520114--6520234	30	3.2	42	64	30	117	57	4	4	33	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59