genome.fa.s10.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  4  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
736140--736209	35	2.0	35	88	0	104	44	28	11	15	1.81
743908--743999	43	2.1	45	92	6	154	6	16	13	63	1.49
745202--745236	16	2.2	16	89	0	52	31	2	0	65	1.07
751015--751066	2	26.0	2	92	7	88	50	0	1	48	1.12
754176--754202	2	13.5	2	100	0	54	0	48	0	51	1.00
755458--755494	15	2.5	15	84	16	51	67	0	21	10	1.21
763519--763566	12	4.1	11	84	12	51	6	12	0	81	0.87
775339--775376	3	12.7	3	94	0	67	2	0	65	31	1.06
779644--779679	14	2.6	14	90	0	54	77	0	11	11	0.99
779948--779984	2	18.5	2	100	0	74	51	0	48	0	1.00
787254--787285	3	10.7	3	93	0	55	0	34	3	62	1.11
787253--787291	9	4.3	9	90	0	51	0	33	10	56	1.33
793988--794050	2	31.5	2	83	12	67	52	1	3	41	1.27
793973--794050	38	2.1	36	93	6	131	53	2	5	37	1.37
796247--796280	2	17.0	2	100	0	68	0	50	0	50	1.00
805501--805683	33	5.7	32	73	12	128	26	4	4	63	1.35
805501--805689	65	2.9	62	75	6	173	26	5	4	63	1.36
805590--805685	32	3.0	31	75	13	95	26	5	3	65	1.28
805895--806002	33	3.3	32	72	15	96	27	9	4	58	1.49
806211--806296	42	2.0	42	90	0	136	41	11	8	38	1.71
816077--816121	2	22.5	2	95	0	72	44	0	4	51	1.21
816190--816232	2	21.5	2	95	0	68	44	0	4	51	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
822268--822293	2	13.0	2	100	0	52	50	0	0	50	1.00
823614--823642	2	14.5	2	100	0	58	48	0	0	51	1.00
838080--838336	80	3.2	79	89	4	383	52	3	4	39	1.38
838314--838360	23	2.0	24	91	4	78	51	6	4	38	1.47
838241--838542	102	3.0	100	76	8	297	51	3	5	39	1.42
845986--846041	11	5.2	11	75	12	53	21	1	1	75	0.99
846001--846076	25	3.0	25	79	14	84	23	2	1	72	1.05
846026--846080	28	2.0	28	85	0	74	23	3	1	70	1.12
846278--846330	15	3.3	16	80	15	56	26	5	0	67	1.12
849821--849856	3	12.0	3	100	0	72	66	0	0	33	0.92
851969--851997	2	14.5	2	100	0	58	51	0	0	48	1.00
872834--872913	23	3.5	22	81	8	81	36	28	12	22	1.91
872735--873089	177	2.0	175	98	1	683	31	20	15	32	1.94
873011--873126	23	4.9	23	75	13	101	36	25	12	25	1.91
873120--873162	21	2.0	21	81	0	50	44	18	9	27	1.80
873078--873302	73	3.1	73	83	1	281	39	22	11	26	1.88
873011--873275	26	11.0	26	70	13	138	38	24	11	26	1.89
873298--873339	22	1.9	22	85	0	57	50	19	7	23	1.72
881600--881659	8	7.4	8	73	16	52	48	0	0	51	1.00
881944--881989	24	2.0	22	91	8	74	28	0	6	65	1.17
890991--891050	30	2.0	30	100	0	120	43	26	10	20	1.83
908233--908330	34	2.9	34	87	1	133	14	17	43	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
911351--911385	18	1.9	18	100	0	70	25	11	22	40	1.88
911638--911682	9	5.0	9	80	0	54	28	8	20	42	1.82
948527--948556	2	15.0	2	92	0	51	46	0	0	53	1.00
948538--948582	23	1.9	23	82	13	56	40	11	2	46	1.52
949037--949076	14	2.8	15	85	14	66	5	40	0	55	1.22
949041--949074	13	2.7	12	86	13	50	5	44	0	50	1.26
949502--949553	7	6.6	8	82	13	56	26	0	0	73	0.84
949503--949552	24	2.1	24	81	7	57	26	0	0	74	0.83
950670--950704	17	2.1	17	100	0	70	22	5	17	54	1.64
964369--964475	16	7.5	15	68	27	56	32	1	0	65	1.04
964422--964478	12	4.3	14	72	24	52	28	0	0	71	0.86
964416--964496	14	5.4	15	74	15	62	27	1	0	71	0.93
973733--973782	16	3.1	17	74	8	50	72	14	6	8	1.27
978593--978641	23	2.1	23	84	0	62	12	22	12	53	1.71
978717--978767	21	2.4	21	81	12	61	43	0	0	56	0.99
983893--983931	2	19.5	2	100	0	78	51	0	0	48	1.00
992873--992902	5	6.0	5	92	0	51	0	23	0	76	0.78
992861--992902	20	2.0	21	90	4	68	0	28	0	71	0.86
993840--993950	55	2.0	55	98	0	213	27	13	25	33	1.93
1005904--1005962	21	2.8	21	84	0	91	27	28	20	23	1.99
1005927--1005993	33	2.0	33	85	0	89	32	32	17	16	1.93
1016555--1016720	85	1.9	86	93	1	289	28	16	18	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1035645--1035683	20	2.0	20	85	9	55	64	5	5	25	1.35
1037063--1037112	10	5.2	10	76	9	59	76	0	0	24	0.80
1057657--1057713	28	2.1	27	80	9	62	31	0	0	68	0.90
1057663--1057710	17	2.8	18	81	9	57	31	0	0	68	0.90
1057984--1058024	10	4.2	10	84	15	59	65	0	0	34	0.93
1057988--1058023	18	2.0	18	100	0	72	66	0	0	33	0.92
1105605--1105647	23	1.9	22	86	13	61	60	4	6	27	1.43
1105605--1105647	22	1.9	23	86	13	63	60	4	6	27	1.43
1106761--1106823	33	1.9	33	83	0	81	44	17	3	34	1.65
1107865--1107936	37	1.9	37	85	0	99	37	19	16	26	1.93
1121684--1121732	13	3.7	14	82	15	52	28	0	8	63	1.23
1129189--1129224	18	2.0	18	89	10	56	41	8	16	33	1.78
1133619--1133870	125	2.0	125	92	0	423	27	21	21	28	1.99
1137485--1137547	3	21.7	3	75	18	53	34	39	1	23	1.65
1137483--1137542	23	2.6	23	94	0	102	33	41	1	23	1.64
1139575--1139601	2	13.5	2	100	0	54	51	0	0	48	1.00
1140020--1140088	2	34.5	2	85	0	75	44	5	4	44	1.47
1140018--1140099	28	2.9	28	90	0	128	43	7	4	43	1.53
1141776--1141811	18	2.0	18	89	10	56	44	8	13	33	1.74
1141882--1141928	20	2.6	18	75	15	51	34	14	8	42	1.77
1143526--1143551	11	2.4	11	100	0	52	26	7	23	42	1.81
1147121--1147146	11	2.4	11	100	0	52	42	23	7	26	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1148730--1148755	11	2.4	11	100	0	52	26	7	23	42	1.81
1153455--1153496	21	2.0	21	90	0	66	19	16	14	50	1.79
1156557--1156765	108	1.9	108	93	1	357	35	19	19	25	1.95
1157016--1157196	94	1.9	94	87	2	265	36	16	24	23	1.94
1160104--1160216	51	2.2	51	88	0	172	50	23	8	16	1.73
1162412--1162454	16	2.5	18	81	11	54	51	2	0	46	1.13
1164187--1164230	18	2.4	18	81	7	54	6	29	0	63	1.20
1165221--1165272	23	2.2	24	79	10	61	36	15	21	26	1.93
1165228--1165272	23	2.0	23	90	0	72	31	13	24	31	1.93
1176669--1176953	93	3.1	92	93	1	480	24	23	29	22	1.99
1196888--1196956	25	2.6	27	90	4	115	37	34	2	24	1.71
1200655--1200696	2	21.0	2	95	0	75	52	0	0	47	1.00
1215221--1215260	2	20.0	2	89	0	62	0	45	5	50	1.23
1219325--1219445	58	2.1	57	95	3	224	43	9	4	41	1.58
1219922--1219972	26	2.0	26	81	14	61	31	1	0	66	1.03
1219942--1219973	16	1.9	17	93	6	57	28	3	0	68	1.04
1223310--1223339	15	2.0	15	100	0	60	20	26	20	33	1.97
1228167--1228195	2	14.5	2	100	0	58	51	0	0	48	1.00
1230825--1231040	109	2.0	108	97	2	407	48	13	5	31	1.65
1239815--1239850	17	2.1	18	89	5	56	36	0	13	50	1.43
1241105--1241133	2	14.5	2	100	0	58	0	48	0	51	1.00
1259621--1259666	2	23.0	2	100	0	92	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1260990--1261019	7	4.3	7	100	0	60	30	13	13	43	1.82
1271008--1271088	39	2.1	39	90	0	126	18	11	61	8	1.54
1274067--1274133	30	2.2	30	91	0	107	61	0	1	37	1.05
1290867--1290899	2	16.5	2	93	0	57	51	3	0	45	1.16
1291841--1292317	160	3.0	163	79	4	468	36	12	17	33	1.88
1293458--1293485	3	9.3	3	100	0	56	35	0	0	64	0.94
1295512--1295562	22	2.3	23	83	10	70	47	0	0	52	1.00
1296579--1296621	2	22.5	2	82	17	56	51	0	2	46	1.13
1296579--1296622	14	2.9	15	93	6	72	52	0	2	45	1.13
1320337--1320362	7	3.7	7	100	0	52	57	0	11	30	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59