genome.fa.s10.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  28  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10306833--10306891	26	2.3	26	100	0	118	42	22	8	27	1.82
10307075--10307115	21	1.9	22	85	5	57	36	7	24	31	1.83
10308079--10308134	29	1.9	29	92	0	94	28	17	23	30	1.97
10313716--10313745	2	15.0	2	92	0	51	3	0	46	50	1.18
10315483--10315529	23	2.0	23	84	8	60	25	10	40	23	1.87
10315841--10315917	23	3.3	23	66	16	68	24	18	32	24	1.97
10315935--10316060	23	5.4	23	67	14	87	26	19	33	20	1.97
10315958--10316037	24	3.4	24	69	10	74	26	21	30	22	1.99
10315535--10316060	47	11.2	47	85	2	592	27	17	30	24	1.97
10316071--10316164	44	2.1	44	82	0	107	26	14	28	29	1.95
10317380--10317430	20	2.5	20	77	0	66	23	43	7	25	1.81
10317512--10317541	14	2.2	13	94	5	51	66	0	33	0	0.92
10318513--10318707	37	5.4	37	84	6	213	29	10	33	27	1.89
10318513--10318707	74	2.7	74	85	6	240	29	10	33	27	1.89
10319456--10319562	31	3.5	31	87	5	146	29	17	15	36	1.92
10320968--10321242	145	1.9	145	87	1	399	30	21	20	28	1.98
10320988--10321309	145	2.2	145	82	4	373	31	21	18	29	1.96
10323420--10323498	31	2.5	31	80	8	97	29	32	15	22	1.95
10323340--10323969	117	5.4	117	88	0	837	27	31	17	23	1.97
10323656--10323732	31	2.5	31	81	12	95	29	31	16	22	1.96
10323895--10323969	31	2.4	31	78	12	82	25	33	17	24	1.96
10327121--10327161	21	2.0	21	85	0	55	19	34	21	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10327846--10328078	31	7.5	31	85	0	313	40	18	13	27	1.88
10328492--10328533	9	4.7	9	81	0	57	35	7	38	19	1.79
10328410--10328533	63	2.0	63	91	0	203	33	13	33	20	1.91
10335353--10335386	9	3.7	9	84	7	50	85	0	2	11	0.71
10335353--10335390	15	2.5	16	83	8	53	84	0	5	10	0.77
10335354--10335398	21	2.3	19	84	7	54	82	0	8	8	0.85
10335354--10335398	19	2.4	19	85	7	56	82	0	8	8	0.85
10336684--10336747	5	13.6	5	84	12	57	75	1	0	23	0.90
10336684--10336766	23	3.7	22	78	13	89	75	1	0	22	0.87
10336684--10336765	28	3.1	27	70	22	75	75	1	0	23	0.87
10338717--10338871	68	2.3	69	83	5	199	34	17	9	39	1.81
10342030--10344848	251	11.3	252	85	3	3302	49	7	10	32	1.65
10342030--10344848	750	3.8	750	85	3	3456	49	7	10	32	1.65
10346596--10346620	13	1.9	13	100	0	50	44	0	8	48	1.32
10349877--10349906	11	2.7	11	89	0	51	56	0	0	43	0.99
10358492--10358527	15	2.2	18	85	14	51	61	0	0	38	0.96
10359185--10359231	15	3.2	14	82	8	58	80	0	2	17	0.80
10359184--10359232	11	4.7	11	70	14	50	77	0	2	20	0.87
10374223--10374286	30	2.2	29	83	5	76	34	1	1	62	1.14
10385191--10385228	19	2.0	19	94	0	67	42	28	0	28	1.56
10402758--10402795	19	2.0	19	94	0	67	28	0	28	42	1.56
10406109--10406148	21	1.9	21	84	0	53	47	2	5	45	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10409814--10409848	17	2.1	17	88	0	52	37	5	8	48	1.58
10420606--10420665	30	2.1	29	81	6	68	30	6	23	40	1.80
10434428--10434545	49	2.5	48	87	2	157	22	10	27	38	1.87
10436035--10436065	15	2.1	15	100	0	62	19	6	48	25	1.72
10436146--10436211	29	2.3	29	82	10	73	27	3	7	62	1.37
10436204--10436243	20	2.0	21	90	5	64	20	2	7	70	1.24
10438691--10439017	163	2.0	162	90	0	510	35	22	14	27	1.93
10445233--10445282	21	2.4	21	93	3	84	40	16	6	38	1.73
10445328--10445408	35	2.3	35	84	0	99	28	37	11	23	1.89
10448578--10448615	19	2.0	19	94	0	67	28	0	28	42	1.56
10454334--10454772	222	2.0	223	91	1	720	25	26	15	32	1.95
10455776--10455831	21	2.7	21	91	2	87	39	16	7	37	1.76
10455871--10455940	35	2.0	35	88	0	104	27	35	10	27	1.88
10455874--10455950	35	2.2	35	83	0	91	27	40	9	23	1.84
10471106--10471145	20	2.0	21	90	5	64	20	2	7	70	1.24
10476980--10477017	19	2.0	19	100	0	76	26	0	31	42	1.56
10478002--10478044	2	21.5	2	100	0	86	51	0	0	48	1.00
10478409--10478443	16	2.2	16	94	0	61	37	2	8	51	1.47
10489101--10489137	11	3.5	11	85	7	58	70	8	0	21	1.13
10489100--10489167	21	3.5	19	78	11	59	64	8	1	25	1.30
10492251--10492336	10	8.0	10	71	14	55	0	29	0	70	0.87
10492246--10492293	20	2.5	21	87	12	68	0	29	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10492259--10492336	33	2.4	33	89	6	122	0	28	0	71	0.86
10492247--10492333	43	2.0	45	84	4	115	0	28	0	71	0.87
10495394--10495472	21	3.8	21	72	3	79	39	12	18	29	1.88
10497735--10497776	13	3.3	12	81	18	50	76	2	21	0	0.90
10497727--10497774	23	2.2	20	85	10	60	75	2	22	0	0.91
10497727--10497787	25	2.4	25	78	5	70	72	1	26	0	0.94
10498639--10498672	13	2.6	13	100	0	68	5	23	0	70	1.09
10499696--10499736	21	2.0	21	85	0	55	4	29	0	65	1.13
10502214--10502252	12	3.2	12	79	13	53	33	33	7	25	1.84
10502873--10502903	2	16.0	2	93	6	55	48	51	0	0	1.00
10502873--10502901	15	1.9	15	100	0	58	48	51	0	0	1.00
10503161--10503208	15	3.2	14	80	13	51	43	0	4	52	1.20
10510835--10510894	28	2.1	28	96	0	111	40	15	0	45	1.46
10513564--10513623	21	2.9	21	97	0	111	45	26	13	15	1.83
10515848--10516355	265	1.9	265	84	3	673	28	16	18	36	1.92
10518930--10519315	166	2.3	168	84	7	505	25	21	13	38	1.90
10523563--10523649	43	2.0	43	97	0	165	36	5	27	29	1.80
10526122--10526227	2	53.5	2	76	1	79	42	5	4	47	1.48
10526275--10526299	2	12.5	2	100	0	50	52	0	0	48	1.00
10526211--10526291	32	2.5	32	71	11	76	45	6	8	39	1.60
10526836--10527040	98	2.1	98	87	1	286	31	24	20	23	1.98
10528885--10528931	16	2.9	15	84	15	58	2	19	0	78	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10531338--10531672	168	2.0	167	98	1	645	39	18	12	28	1.87
10532837--10532864	2	14.0	2	100	0	56	50	0	0	50	1.00
10542626--10542670	2	22.5	2	100	0	90	51	0	0	48	1.00
10542703--10542784	43	1.9	43	94	0	146	21	29	17	31	1.96
10542810--10542856	2	24.0	2	91	4	78	48	2	0	48	1.13
10543096--10543132	19	2.0	19	89	5	58	40	21	2	35	1.68
10549823--10549871	21	2.2	23	85	7	66	38	10	8	42	1.68
10556987--10557036	25	2.0	25	84	0	64	42	14	2	42	1.56
10567189--10567230	22	1.9	22	90	0	66	50	23	7	19	1.72
10579275--10579327	21	2.7	20	82	5	63	41	15	0	43	1.46
10579597--10579623	2	13.5	2	100	0	54	51	0	0	48	1.00
10586675--10586827	34	4.4	34	76	8	141	21	7	44	26	1.78
10586651--10586823	35	5.0	35	79	2	197	21	7	43	26	1.79
10586651--10586827	69	2.6	68	88	3	248	22	7	44	25	1.79
10586964--10587012	12	3.6	14	76	18	59	85	0	0	14	0.59
10586962--10587012	18	2.8	18	82	11	68	86	0	0	13	0.58
10586962--10587002	9	4.6	9	82	11	57	87	0	0	12	0.53
10591167--10591197	6	5.3	6	96	3	55	16	16	38	29	1.90
10600216--10600461	67	3.7	67	83	4	302	36	25	13	25	1.92
10602978--10603011	10	3.4	10	83	0	50	41	17	2	38	1.65
10602973--10603011	20	2.0	20	94	0	69	38	17	2	41	1.64
10617190--10617223	16	2.2	15	94	5	59	52	0	2	44	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10617111--10617601	169	3.0	164	86	8	630	54	4	1	38	1.33
10617437--10617491	27	2.0	27	82	6	67	56	1	0	41	1.10
10617499--10617691	41	4.8	41	67	16	100	53	2	3	40	1.28
10617506--10617588	27	3.2	26	77	14	75	55	0	1	43	1.07
10617168--10617920	159	4.7	158	83	7	785	54	3	2	39	1.31
10618062--10618113	27	1.9	27	88	0	77	34	5	0	59	1.21
10625581--10625629	21	2.3	21	96	0	89	28	28	0	42	1.56
10629673--10629722	19	2.6	19	100	0	100	28	36	20	16	1.93
10640969--10641082	43	2.7	43	84	2	149	22	19	37	20	1.94
10641474--10641566	39	2.3	40	85	1	125	21	17	23	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59