genome.fa.s10.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  36  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13113820--13113903	43	2.0	43	80	4	98	27	7	21	44	1.78
13114143--13114208	19	3.6	18	82	8	62	74	4	3	18	1.12
13114170--13114225	17	3.3	17	77	7	60	75	1	5	17	1.09
13117085--13117122	20	1.9	20	88	0	58	39	15	15	28	1.89
13118651--13118922	137	2.0	135	98	0	517	33	15	19	31	1.93
13121444--13122103	330	2.0	329	99	0	1311	30	15	22	30	1.95
13125639--13125757	43	2.8	43	89	2	177	21	21	37	19	1.94
13125649--13125770	43	2.8	43	88	2	174	22	18	39	18	1.92
13125756--13125818	20	3.2	20	90	2	101	25	3	41	30	1.71
13135644--13135915	62	4.3	62	81	2	294	32	20	23	23	1.98
13135633--13135913	124	2.2	126	82	3	352	32	19	23	24	1.98
13147161--13147210	27	1.9	27	88	8	77	50	0	2	48	1.12
13147300--13147356	27	2.2	26	90	6	89	43	0	3	52	1.18
13147305--13147572	42	6.7	39	70	16	138	43	1	2	52	1.24
13147363--13147430	20	3.3	20	68	8	64	47	1	1	50	1.19
13147463--13147512	7	7.3	7	76	13	50	54	2	0	44	1.11
13147141--13147572	158	2.8	150	83	6	487	40	1	2	55	1.23
13147463--13147515	27	2.0	26	96	3	97	52	3	0	43	1.19
13156795--13156983	31	5.9	31	81	7	225	30	28	9	31	1.89
13163404--13163572	77	2.1	78	85	5	223	40	8	13	36	1.76
13163831--13163869	15	2.6	15	91	0	60	51	2	23	23	1.61
13168135--13168172	20	2.0	20	94	5	69	21	26	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13168964--13169075	43	2.6	43	87	2	163	24	19	35	20	1.96
13168967--13169088	43	2.8	43	83	2	156	24	18	36	20	1.94
13169329--13169371	21	2.2	20	83	8	52	25	25	27	20	1.99
13175909--13176015	43	2.5	43	90	1	162	21	35	20	22	1.96
13176047--13176133	2	41.5	2	87	4	102	47	2	4	44	1.36
13176047--13176155	54	2.0	55	91	8	179	46	4	7	40	1.52
13181816--13181919	38	2.7	40	82	7	124	20	15	40	24	1.90
13181804--13181922	40	3.1	39	77	14	131	21	15	38	24	1.92
13182282--13186187	443	8.9	440	83	7	4428	29	23	19	27	1.98
13182508--13186187	422	8.4	421	81	9	3845	29	22	19	27	1.98
13185371--13186992	805	2.0	773	83	10	1992	29	22	20	27	1.98
13186373--13187234	444	1.9	441	89	1	1330	29	23	19	28	1.98
13194207--13194286	42	1.9	42	89	0	124	46	8	6	38	1.60
13197489--13197536	24	2.0	24	84	8	62	33	18	10	37	1.85
13202822--13202864	17	2.5	18	88	11	72	44	23	6	25	1.78
13205048--13205079	13	2.5	13	100	0	64	37	0	31	31	1.58
13206862--13206933	37	1.9	37	83	5	92	41	1	0	56	1.07
13218260--13218292	13	2.6	13	90	4	50	72	18	3	6	1.18
13219521--13219569	9	5.4	9	80	9	64	75	0	2	22	0.90
13219521--13219569	17	2.8	17	90	6	71	75	0	2	22	0.90
13219624--13219666	22	2.0	20	86	8	59	69	4	2	23	1.18
13219846--13219881	17	2.3	15	90	9	54	77	0	0	22	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13219845--13219893	18	2.8	17	82	14	55	79	0	0	20	0.73
13219844--13219896	26	2.1	26	82	6	74	77	0	3	18	0.92
13219995--13220030	19	1.9	19	88	5	56	61	0	19	19	1.35
13220046--13220093	5	9.2	5	78	17	53	75	2	2	20	1.02
13220046--13220093	11	4.6	10	82	10	53	75	2	2	20	1.02
13229004--13229163	31	5.2	29	75	9	124	26	21	13	38	1.90
13229047--13229218	61	2.8	61	81	7	177	26	19	17	36	1.94
13229021--13229218	31	6.5	30	75	11	116	25	19	17	37	1.93
13229004--13229218	92	2.3	92	80	4	247	25	20	16	37	1.93
13229856--13229888	16	2.0	17	88	5	50	9	27	3	60	1.42
13232696--13232736	21	1.9	22	90	5	66	51	7	24	17	1.70
13232696--13232740	20	2.2	21	84	11	58	55	6	22	15	1.63
13232694--13232741	21	2.3	20	79	10	60	56	6	22	14	1.61
13238573--13238694	43	2.9	42	78	8	138	22	31	19	26	1.98
13240252--13240302	20	2.5	20	72	12	50	37	3	21	37	1.72
13242829--13242866	20	1.9	20	94	0	67	28	7	21	42	1.81
13242919--13242971	28	1.9	27	88	3	79	35	20	16	26	1.94
13244121--13244145	13	1.9	13	100	0	50	44	0	8	48	1.32
13248339--13248475	55	2.5	55	89	1	211	24	35	16	23	1.94
13248339--13248500	55	2.9	54	85	4	207	25	33	16	24	1.96
13252191--13252234	23	1.9	23	81	9	54	15	27	4	52	1.63
13253938--13253975	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13261096--13261340	81	3.0	81	92	2	395	24	38	15	22	1.92
13261133--13261286	44	3.6	44	73	19	155	23	37	15	23	1.93
13261096--13261280	42	4.5	42	69	22	121	23	38	15	22	1.92
13261108--13261323	37	5.5	37	69	22	154	24	39	14	20	1.91
13263025--13263064	19	2.2	19	86	4	55	47	0	0	52	1.00
13265320--13265356	19	1.9	19	89	10	58	5	27	2	64	1.28
13267075--13267177	40	2.6	40	81	4	120	22	14	39	23	1.91
13272560--13272715	37	4.2	37	95	3	287	27	10	37	25	1.88
13278742--13278778	18	2.1	18	90	5	58	8	13	8	70	1.34
13286623--13286684	26	2.4	26	91	0	97	33	38	4	22	1.76
13286691--13286763	30	2.4	30	95	0	128	24	24	28	21	1.99
13286734--13287211	42	11.4	42	92	0	767	22	33	22	21	1.98
13291480--13291634	82	1.9	82	87	0	229	24	14	19	41	1.88
13295905--13296001	31	3.2	31	83	1	124	32	18	12	36	1.88
13296359--13296395	16	2.4	16	86	13	51	13	5	16	64	1.45
13297667--13298050	80	4.8	80	88	1	553	30	9	26	33	1.89
13299117--13299157	20	2.0	20	85	0	55	34	2	17	46	1.61
13299770--13299820	22	2.2	24	83	13	63	21	13	9	54	1.67
13301196--13301226	16	1.9	16	93	0	53	25	0	51	22	1.48
13301234--13301273	20	1.9	22	85	10	57	7	20	27	45	1.78
13303063--13303095	15	2.2	15	94	0	57	84	0	12	3	0.72
13310794--13310876	42	2.0	42	95	0	148	21	37	22	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13328405--13328458	2	27.0	2	81	7	65	48	1	3	46	1.30
13330401--13330434	10	3.3	10	84	8	50	76	0	2	20	0.92
13330910--13330950	18	2.3	18	86	0	55	14	48	17	19	1.81
13336467--13336587	43	2.8	43	88	2	172	25	19	36	19	1.94
13341644--13341673	15	1.9	16	93	6	53	60	20	3	16	1.50
13343106--13343178	33	2.2	33	82	0	83	34	13	9	42	1.77
13353214--13353286	32	2.3	32	80	0	83	50	9	8	31	1.64
13353749--13353786	2	20.0	2	89	10	62	0	50	0	50	1.00
13353786--13353830	2	22.5	2	95	0	81	46	0	2	51	1.13
13354802--13354834	2	16.5	2	100	0	66	51	0	0	48	1.00
13360547--13360584	19	2.0	19	100	0	76	42	31	0	26	1.56
13381652--13381790	73	1.9	73	89	1	217	32	22	17	27	1.97
13396360--13396439	39	2.1	39	100	0	160	33	5	12	48	1.63
13396379--13396440	19	3.2	19	69	13	63	35	6	12	45	1.68
13401979--13402074	23	4.1	23	67	7	68	44	20	11	22	1.84
13403091--13403116	3	8.7	3	100	0	52	69	0	0	30	0.89
13410599--13410784	93	2.0	93	100	0	372	21	19	25	33	1.97
13417715--13417751	19	1.9	19	100	0	74	27	0	29	43	1.55
13420997--13421065	35	1.9	37	88	5	106	36	24	13	26	1.92
13422629--13422657	9	3.0	10	90	10	51	51	6	0	41	1.28
13425959--13426009	15	3.4	15	81	10	59	50	17	1	29	1.57
13433154--13433200	21	2.3	20	85	3	58	34	17	14	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13434778--13434820	20	2.2	20	91	4	70	58	11	4	25	1.52
13435875--13435921	21	2.2	21	85	7	60	68	4	2	25	1.19
13435928--13435963	17	2.1	18	90	10	58	66	5	0	27	1.13
13437219--13437261	22	1.9	23	81	13	54	67	9	2	20	1.30
13445464--13445519	5	11.4	5	86	9	64	0	21	0	78	0.75
13445466--13445519	19	2.9	19	86	8	76	0	22	0	77	0.76
13445674--13445761	34	2.6	34	81	3	106	34	34	10	21	1.87
13445781--13445884	34	3.0	34	82	1	136	36	25	10	26	1.89
13445775--13445882	35	3.1	33	82	5	126	37	25	10	25	1.88
13449750--13449910	55	2.9	55	90	0	250	21	14	37	26	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59