genome.fa.s10.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  44  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15845475--15845911	222	2.0	214	93	4	750	42	5	7	44	1.54
15851179--15851222	14	3.4	13	81	9	54	34	2	4	59	1.30
15866700--15866736	17	2.1	18	85	14	51	35	8	2	54	1.44
15866703--15866753	17	2.9	17	80	8	50	45	5	1	47	1.38
15867606--15867639	2	17.0	2	100	0	68	50	50	0	0	1.00
15876953--15877640	357	1.9	356	89	3	1071	34	10	14	39	1.81
15883300--15883411	22	5.1	22	70	4	82	19	11	33	35	1.88
15883297--15883413	44	2.7	44	82	5	137	19	11	32	36	1.87
15883427--15883484	23	2.6	22	76	7	55	22	10	25	41	1.85
15885146--15885348	35	6.0	34	72	13	111	34	26	12	26	1.92
15885177--15885351	67	2.6	67	89	4	266	36	27	12	24	1.90
15897104--15897252	35	4.5	32	73	12	120	37	28	11	22	1.89
15897080--15897252	67	2.6	66	88	4	249	35	27	12	24	1.91
15897104--15897214	32	3.4	32	75	11	116	36	28	11	23	1.90
15897998--15898123	28	4.5	28	82	5	130	23	16	10	50	1.76
15897999--15898123	56	2.2	56	82	2	153	23	16	10	49	1.76
15898442--15898516	28	2.7	28	91	0	123	20	24	6	49	1.72
15900363--15900430	33	2.1	33	91	0	109	35	19	17	27	1.94
15903217--15903389	65	2.7	65	83	3	206	23	9	30	37	1.86
15903342--15903442	45	2.2	45	83	0	139	22	7	26	42	1.81
15903371--15903521	22	6.8	22	74	3	122	23	7	25	43	1.81
15903346--15903432	23	3.8	23	78	3	95	24	8	28	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15903369--15903521	67	2.3	67	79	4	175	24	7	25	42	1.81
15903363--15903454	45	2.0	45	85	0	121	22	8	28	40	1.84
15903420--15903521	45	2.3	44	79	1	123	23	6	24	45	1.77
15903489--15903586	23	4.2	23	75	6	83	22	11	23	42	1.85
15905430--15905494	23	2.9	22	84	6	76	44	24	9	21	1.81
15906505--15906630	28	4.5	28	78	3	103	22	14	10	53	1.71
15906953--15907027	28	2.7	28	89	0	114	21	24	5	49	1.70
15908884--15908951	33	2.1	33	85	0	91	38	19	14	27	1.91
15921059--15921097	21	1.9	19	85	10	51	10	20	20	48	1.78
15926269--15926417	81	1.8	81	84	2	201	20	8	32	38	1.84
15926401--15926501	45	2.2	45	82	0	130	22	6	26	43	1.78
15926430--15926580	22	6.8	22	71	3	86	23	9	25	42	1.83
15926422--15926513	45	2.0	45	82	0	112	22	7	28	41	1.81
15926479--15926581	45	2.3	44	75	3	116	22	8	25	43	1.81
15926582--15926649	25	2.8	24	80	6	84	25	14	20	39	1.91
15928816--15928857	20	2.1	21	83	12	54	45	2	30	21	1.65
15929925--15930009	33	2.6	33	96	1	154	36	3	7	52	1.46
15929949--15930006	19	3.3	19	63	22	54	34	3	6	55	1.44
15931261--15931335	28	2.7	28	79	6	91	46	4	26	22	1.69
15931543--15931653	35	3.2	35	88	1	161	18	15	18	47	1.82
15935894--15936035	74	1.9	73	85	1	194	23	14	15	46	1.82
15936801--15936873	29	2.4	30	86	4	103	47	19	9	23	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15942915--15942974	30	2.0	30	100	0	120	40	23	3	33	1.71
15947667--15947754	24	3.5	24	76	11	79	52	5	5	36	1.49
15947724--15947784	30	2.0	30	87	6	88	44	3	8	44	1.50
15949543--15949586	20	2.3	19	88	11	63	45	0	2	52	1.13
15950926--15951083	51	3.1	51	69	11	162	40	7	5	46	1.54
15950926--15951124	101	2.0	97	95	4	355	41	6	5	47	1.50
15957150--15957180	8	3.8	8	95	4	53	70	0	0	29	0.87
15965729--15965763	2	17.5	2	87	0	52	54	0	0	45	0.99
15966626--15966667	19	2.2	19	91	0	66	28	14	11	45	1.80
15966737--15966766	14	2.1	14	93	0	51	30	0	23	46	1.52
15973973--15974016	20	2.2	21	80	12	56	47	0	2	50	1.13
15976733--15976782	20	2.5	19	81	9	64	40	22	8	30	1.82
15978137--15978412	144	1.9	144	88	4	423	35	7	8	47	1.63
15978877--15978938	30	2.1	30	93	0	106	30	6	12	50	1.66
15989437--15989528	47	2.0	47	97	0	175	34	14	27	23	1.93
16002357--16002412	21	2.6	22	78	16	55	25	0	10	64	1.26
16011290--16011328	17	2.2	18	86	4	53	20	0	10	69	1.17
16011329--16011380	20	2.6	19	79	8	59	51	0	0	48	1.00
16013849--16013874	11	2.4	11	100	0	52	42	0	0	57	0.98
16015392--16015421	4	7.5	4	100	0	60	50	0	0	50	1.00
16029291--16029387	48	2.0	48	94	4	169	19	22	10	47	1.79
16030404--16030445	18	2.3	19	84	12	52	30	4	0	64	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16030710--16030774	28	2.2	29	89	10	96	67	0	0	32	0.91
16030736--16030783	22	2.2	22	88	3	71	64	0	2	33	1.05
16031702--16031735	17	2.0	17	94	0	59	44	5	17	32	1.73
16039287--16039525	122	2.0	116	85	6	318	38	19	15	26	1.91
16040896--16040949	24	2.2	24	83	6	65	0	57	3	38	1.17
16043838--16043892	23	2.3	24	81	3	67	65	0	5	29	1.15
16082104--16082199	36	2.7	36	96	0	174	34	12	15	37	1.85
16084458--16084489	4	7.8	4	96	3	55	75	3	21	0	0.95
16087110--16087142	16	2.0	17	88	5	50	54	9	0	36	1.32
16087317--16087358	21	2.0	20	86	4	57	42	7	2	47	1.43
16089527--16089582	24	2.3	24	81	0	67	50	8	32	8	1.65
16099103--16099321	35	6.3	34	79	10	230	28	24	5	41	1.76
16099115--16099321	106	2.0	103	83	4	263	28	25	4	41	1.76
16115218--16115323	38	2.7	39	76	4	115	22	37	16	22	1.94
16116389--16116606	35	6.3	35	82	5	239	27	25	5	41	1.76
16116383--16116616	105	2.2	103	82	7	276	28	25	5	41	1.77
16124703--16126635	748	2.6	745	81	5	2186	33	10	7	47	1.67
16124616--16126647	248	8.1	251	80	5	1954	33	11	7	47	1.68
16129100--16129142	19	2.1	20	83	12	52	25	2	13	58	1.48
16129770--16129815	19	2.3	21	89	10	71	21	0	10	67	1.21
16131911--16132016	37	2.9	37	82	0	140	31	11	34	22	1.90
16144856--16144893	20	1.9	20	100	0	76	36	10	18	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16153067--16153100	14	2.3	15	90	5	52	41	0	17	41	1.50
16153780--16155286	504	3.0	498	79	5	1541	47	6	11	34	1.65
16154246--16155308	252	4.2	252	81	4	1124	47	6	11	34	1.66
16175224--16175648	171	2.4	174	85	5	554	37	14	12	36	1.83
16191901--16191944	15	2.8	15	82	6	52	13	2	2	81	0.88
16191892--16191936	20	2.2	20	84	0	63	11	4	4	80	1.01
16193637--16193672	14	2.6	14	95	0	63	16	0	0	83	0.65
16193716--16193754	19	2.0	20	95	5	71	66	5	5	23	1.32
16199578--16199625	19	2.6	18	80	9	51	29	12	29	29	1.93
16214609--16214711	38	2.6	38	82	11	120	23	38	16	21	1.92
16214609--16214707	19	5.1	19	65	9	56	22	38	17	22	1.93
16217056--16217141	43	2.0	43	97	0	163	41	19	9	29	1.83
16219707--16219749	22	2.0	22	85	0	59	58	6	0	34	1.25
16220975--16221029	21	2.6	22	83	13	71	54	0	1	43	1.10
16221988--16222042	27	2.0	27	96	0	101	25	10	23	40	1.87
16232882--16233102	68	3.3	67	82	5	248	35	20	9	35	1.84
16241369--16241449	2	42.5	2	86	9	116	46	1	0	50	1.09
16241919--16241953	18	1.9	18	88	0	52	28	20	8	42	1.81
16262721--16262765	21	2.2	21	80	15	58	64	8	0	26	1.23
16262724--16262765	20	2.1	20	86	8	59	66	9	0	23	1.21
16262801--16262844	21	2.0	22	86	4	63	54	18	4	22	1.61
16263008--16263411	47	8.8	47	75	10	264	39	15	14	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16263210--16263411	48	4.2	48	79	5	221	40	15	13	30	1.87
16263034--16263354	178	1.8	176	83	5	423	38	14	14	31	1.87
16263210--16263412	96	2.1	95	84	6	259	40	15	13	30	1.86
16265077--16265116	21	2.0	21	85	5	55	72	7	2	17	1.19
16266389--16266447	20	2.8	22	76	16	63	0	18	3	77	0.90
16266368--16266446	17	4.9	15	72	15	59	1	16	2	79	0.90
16280009--16280097	43	2.1	43	95	0	160	34	12	14	38	1.84
16284921--16284990	32	2.2	32	89	0	104	52	15	14	17	1.74
16287835--16287894	30	2.1	29	81	6	68	31	8	21	38	1.83
16293415--16293439	13	1.9	13	100	0	50	48	8	0	44	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59