genome.fa.s10.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  50  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18017022--18017081	29	2.1	29	100	0	120	23	15	30	31	1.95
18027993--18028043	21	2.4	21	80	12	59	31	3	3	60	1.33
18028589--18028632	21	2.0	21	83	12	54	36	6	2	54	1.40
18028510--18029049	294	1.8	295	83	5	725	33	10	6	50	1.61
18028801--18029400	240	2.5	245	78	9	604	34	8	6	51	1.58
18033225--18033258	2	17.0	2	93	0	59	50	2	0	47	1.16
18042721--18042754	3	11.3	3	100	0	68	32	0	0	67	0.91
18043961--18044711	249	3.0	250	84	4	976	49	5	9	35	1.58
18044315--18044362	14	3.4	14	76	2	51	43	0	2	54	1.12
18044313--18044371	28	2.0	31	87	9	88	40	0	3	55	1.16
18044219--18044774	252	2.3	235	77	12	593	49	5	9	35	1.59
18044911--18044943	17	1.9	17	93	0	57	45	3	3	48	1.33
18045288--18045335	16	2.8	17	78	9	53	18	4	0	77	0.93
18049748--18049810	12	5.1	12	75	7	54	34	3	12	49	1.57
18049877--18049910	12	2.8	12	86	0	50	29	0	17	52	1.45
18058690--18058838	78	1.9	77	83	4	192	32	21	12	33	1.90
18061736--18061868	67	2.0	65	94	5	232	15	10	13	59	1.60
18082829--18082898	29	2.4	29	77	15	72	54	0	8	37	1.31
18085849--18085888	2	21.0	2	80	19	50	50	0	2	47	1.14
18089063--18089111	22	2.2	22	100	0	98	48	10	18	22	1.77
18089130--18089174	22	2.0	22	95	0	81	31	11	8	48	1.69
18095882--18095911	2	15.0	2	92	0	51	46	0	3	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18098763--18099262	120	4.2	119	87	3	707	24	18	19	38	1.93
18102094--18102120	13	2.1	13	100	0	54	29	25	7	37	1.83
18103319--18103360	18	2.3	18	84	8	50	19	4	14	61	1.49
18104977--18105012	17	2.1	17	89	5	54	77	2	11	5	1.01
18105033--18105075	2	21.5	2	100	0	86	48	0	0	51	1.00
18105816--18105890	17	4.2	18	78	11	75	69	1	1	28	1.05
18105816--18105913	36	2.7	35	78	6	106	71	1	1	26	0.99
18110218--18110305	39	2.3	39	85	0	122	17	18	14	50	1.79
18111346--18111465	2	59.0	2	96	3	222	49	0	0	49	1.06
18112258--18112317	30	2.0	30	96	0	111	25	16	8	50	1.73
18112879--18112912	17	2.1	17	94	5	61	50	29	5	14	1.67
18117959--18118056	33	3.0	33	84	3	108	21	12	28	37	1.89
18117993--18118066	33	2.2	33	90	0	112	22	13	28	35	1.92
18120469--18121087	120	5.2	120	90	0	925	26	17	18	37	1.93
18126722--18126760	19	2.0	20	85	5	53	58	2	0	38	1.12
18130528--18130601	2	38.0	2	90	5	116	47	0	0	51	1.00
18142450--18142474	5	5.0	5	100	0	50	60	20	0	20	1.37
18143187--18143274	33	2.7	32	73	7	86	40	9	12	37	1.75
18154973--18155021	22	2.2	22	85	0	62	44	16	16	22	1.86
18154987--18155028	22	1.9	22	85	0	57	47	11	19	21	1.81
18155166--18155229	22	3.0	21	90	4	92	39	26	6	28	1.80
18156187--18156357	73	2.3	73	82	4	193	19	19	23	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18175080--18175106	14	1.9	14	100	0	54	0	22	3	74	0.98
18176057--18176269	55	3.9	55	91	1	338	21	15	37	25	1.93
18186045--18186082	18	2.1	18	85	9	51	34	5	2	57	1.35
18190414--18190438	5	5.0	5	100	0	50	40	0	0	60	0.97
18192414--18192466	27	2.0	27	88	0	79	20	18	28	32	1.97
18192953--18192999	19	2.5	19	96	0	85	34	8	0	57	1.29
18195998--18196022	13	1.9	13	100	0	50	48	8	0	44	1.32
18201097--18201137	15	2.7	16	92	7	68	48	19	4	26	1.69
18203183--18203222	20	2.0	20	85	9	55	12	20	5	62	1.48
18203583--18203620	20	1.9	20	94	0	67	44	18	5	31	1.72
18207720--18207766	23	2.0	23	87	0	67	61	6	10	21	1.50
18209199--18209245	24	2.0	24	87	4	69	59	4	4	31	1.36
18211566--18211595	15	2.0	15	100	0	60	20	0	20	60	1.37
18220958--18221096	70	2.0	71	95	1	253	45	16	20	17	1.86
18221595--18221680	34	2.5	34	88	0	127	19	16	26	37	1.93
18223302--18223371	24	2.9	25	77	12	76	58	0	1	40	1.07
18223261--18223343	42	2.1	40	84	13	109	56	0	1	42	1.07
18224472--18225254	349	2.3	337	86	5	1079	43	4	10	41	1.58
18229250--18230266	363	2.8	359	86	5	1384	38	17	13	30	1.88
18231854--18232358	249	2.0	248	96	1	922	53	7	11	27	1.62
18235111--18235148	19	2.0	19	89	0	58	28	2	28	39	1.70
18236608--18236632	13	1.9	13	100	0	50	44	0	8	48	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18243727--18243792	25	2.5	24	76	16	60	40	0	18	40	1.50
18243921--18243958	19	2.0	20	89	5	60	63	18	0	18	1.32
18245048--18245126	34	2.3	34	80	4	97	39	26	12	21	1.89
18245308--18245390	34	2.4	34	81	0	94	39	24	13	22	1.90
18251657--18251682	13	2.0	13	100	0	52	23	0	38	38	1.55
18252784--18253176	210	1.9	211	84	4	535	49	18	15	16	1.80
18253116--18253232	56	2.1	56	85	0	153	35	35	6	21	1.80
18252909--18253413	266	1.9	265	84	3	685	45	23	14	16	1.84
18256842--18256911	30	2.3	30	80	4	79	52	2	4	40	1.36
18257411--18257619	108	1.9	107	90	0	328	42	4	16	35	1.70
18257975--18258001	14	1.9	14	100	0	54	22	0	7	70	1.12
18263188--18263212	13	1.9	13	100	0	50	44	0	8	48	1.32
18264611--18264648	15	2.5	15	91	0	58	28	2	15	52	1.56
18264694--18264733	5	8.0	5	91	0	62	40	0	22	37	1.54
18268871--18268908	20	1.9	20	94	0	67	28	5	18	47	1.70
18276275--18276550	91	3.0	91	82	5	308	37	9	16	36	1.81
18278061--18278098	19	2.0	19	94	0	67	28	0	28	42	1.56
18278990--18279049	28	2.1	28	84	6	75	31	8	20	40	1.82
18291055--18291237	62	2.8	65	76	11	198	21	20	33	25	1.97
18304349--18304390	9	4.9	9	82	8	52	80	0	2	16	0.81
18304362--18304395	17	2.0	17	88	0	50	73	0	5	20	1.04
18304655--18304740	42	2.0	43	88	6	131	48	24	10	16	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18310083--18310188	2	52.5	2	92	1	149	46	0	0	47	1.09
18322793--18322855	29	2.1	30	91	2	101	55	0	1	42	1.09
18322921--18322956	19	1.9	18	88	5	54	36	5	13	44	1.68
18336134--18336169	15	2.4	15	100	0	72	13	16	38	30	1.88
18359180--18359426	62	4.0	62	94	0	440	36	22	11	29	1.89
18371721--18371772	10	4.6	11	83	16	63	25	1	1	71	1.07
18371717--18371783	27	2.5	26	83	11	82	26	1	1	70	1.05
18374169--18374196	2	14.0	2	100	0	56	50	0	0	50	1.00
18375545--18375770	75	3.3	68	75	19	236	56	3	0	39	1.21
18375613--18375737	27	5.0	26	72	20	88	56	1	0	41	1.15
18375507--18375734	75	3.2	73	75	18	253	55	3	0	40	1.21
18385234--18385260	2	13.5	2	100	0	54	51	48	0	0	1.00
18402603--18402645	2	21.5	2	100	0	86	51	0	0	48	1.00
18414264--18414304	17	2.4	18	80	12	50	36	4	0	58	1.20
18427724--18427814	34	2.7	34	98	0	173	35	10	24	29	1.90
18432098--18432148	19	2.7	20	85	11	63	43	3	0	52	1.19
18435735--18435773	5	7.8	5	88	0	60	38	23	0	38	1.55
18435800--18435841	22	1.9	22	95	0	75	52	14	0	33	1.42
18435803--18435841	11	3.5	11	89	0	60	51	15	0	33	1.44
18446569--18446616	2	24.0	2	95	0	87	50	2	0	47	1.12
18449858--18449934	39	2.0	39	84	0	100	18	15	22	44	1.87
18452265--18452303	13	3.0	13	88	0	51	38	35	10	15	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18452684--18452786	38	2.6	39	80	6	120	24	42	15	17	1.88
18453110--18453142	2	17.0	2	93	6	59	51	48	0	0	1.00
18458086--18458162	39	2.0	39	94	0	136	15	15	24	44	1.85
18459021--18459175	72	2.2	72	92	0	256	30	14	29	25	1.95
18459647--18459906	144	1.8	144	85	1	369	30	18	20	30	1.97
18463466--18463546	26	3.2	25	74	8	67	37	12	18	32	1.88
18463476--18463548	25	2.8	25	74	12	67	36	12	17	32	1.87
18465715--18465743	9	3.0	10	90	10	51	51	6	0	41	1.28
18471075--18471110	18	1.9	19	88	5	56	22	25	0	52	1.47
18472504--18472547	19	2.5	17	89	10	63	61	0	0	38	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59