genome.fa.s9.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  14  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6818655--6818814	47	3.4	49	80	7	136	25	13	26	35	1.92
6818847--6818903	21	2.6	22	86	5	80	45	24	8	21	1.80
6818863--6818910	21	2.2	21	81	3	51	45	25	10	18	1.81
6820930--6821143	112	1.9	110	88	5	326	37	13	3	45	1.60
6821893--6821969	31	2.5	31	81	12	88	31	7	3	57	1.45
6824855--6824987	65	2.0	66	88	1	196	19	17	22	40	1.91
6825278--6825372	47	2.0	47	93	0	163	24	17	23	34	1.96
6826522--6826725	104	2.0	104	88	0	300	31	10	38	19	1.85
6827729--6828015	145	2.0	143	98	0	547	29	12	12	44	1.80
6828022--6828062	2	22.0	2	85	14	61	51	0	0	48	1.00
6831368--6831411	2	22.0	2	85	0	61	47	4	2	45	1.35
6831369--6831407	20	2.0	20	100	0	78	46	5	2	46	1.38
6831760--6831793	2	17.5	2	93	6	61	52	0	0	47	1.00
6831854--6831910	2	28.5	2	85	7	71	49	0	0	43	1.03
6831762--6831991	116	2.0	111	92	5	379	54	6	4	32	1.47
6832243--6832304	27	2.3	27	82	0	79	25	32	33	8	1.85
6832859--6833069	104	2.0	104	84	0	269	19	39	9	31	1.83
6844062--6844116	23	2.3	24	81	12	69	45	0	0	54	0.99
6845477--6845540	30	2.1	32	91	5	105	37	7	12	42	1.72
6845586--6845707	45	2.7	44	83	5	138	26	18	19	36	1.94
6845586--6845707	44	2.7	45	83	2	147	26	18	19	36	1.94
6845700--6845786	45	1.9	45	90	0	138	29	18	17	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6845701--6845804	45	2.3	45	83	3	129	30	17	15	36	1.91
6849233--6849257	3	8.3	3	100	0	50	68	0	0	32	0.90
6853186--6853212	6	4.5	6	100	0	54	14	0	37	48	1.45
6854963--6855145	84	2.2	83	86	5	255	37	4	18	40	1.70
6855122--6855180	30	2.0	30	93	0	100	45	0	13	40	1.43
6855344--6855404	30	2.0	31	87	3	88	45	1	11	40	1.50
6854997--6855452	224	2.0	226	87	5	659	38	5	18	37	1.74
6855577--6855617	14	2.6	16	77	22	50	53	0	0	46	1.00
6856348--6856374	3	9.0	3	100	0	54	33	0	0	66	0.92
6856812--6856855	21	2.0	22	82	4	54	43	6	4	45	1.51
6871630--6871910	78	3.6	77	83	4	332	36	13	15	34	1.87
6878351--6878447	21	4.6	21	80	5	88	31	3	15	49	1.60
6878349--6878429	42	1.9	42	87	5	119	29	2	17	50	1.59
6878373--6878497	42	3.0	42	87	0	169	37	2	10	49	1.50
6878352--6878489	63	2.2	63	81	0	150	34	2	13	49	1.56
6878410--6878497	21	4.2	21	82	0	104	40	2	7	48	1.45
6903296--6903325	9	3.2	9	90	9	51	80	0	0	20	0.72
6903296--6903325	10	3.1	10	95	4	53	80	0	0	20	0.72
6911131--6911169	2	19.5	2	89	0	60	46	2	0	51	1.14
6929796--6929841	2	24.0	2	82	8	60	45	0	54	0	0.99
6940315--6940350	14	2.6	14	86	0	54	72	5	8	13	1.27
6941962--6942009	25	2.0	24	87	4	69	68	2	0	29	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6950177--6950203	14	1.9	14	100	0	54	74	0	3	22	0.98
6959167--6959214	15	3.0	16	81	6	53	60	2	2	35	1.20
6967324--6967384	29	2.1	29	100	0	122	45	9	6	37	1.63
6976684--6976756	10	7.9	10	72	17	59	23	10	16	49	1.77
6976686--6976750	18	3.6	18	91	0	103	23	10	15	50	1.75
6976933--6977022	20	4.7	20	69	15	64	40	0	2	57	1.11
6977018--6977056	9	4.3	9	83	0	51	30	10	20	38	1.86
6977018--6977056	18	2.2	18	95	0	69	30	10	20	38	1.86
6977747--6977779	16	2.1	16	88	11	50	39	0	9	51	1.34
6978130--6978192	21	2.9	21	78	4	54	47	1	6	44	1.38
6979337--6979424	22	3.9	22	73	7	68	21	6	1	70	1.17
6980398--6980425	2	14.0	2	100	0	56	50	0	0	50	1.00
6981503--6981535	10	3.3	10	88	12	50	3	6	0	90	0.52
6981716--6982344	38	16.6	37	84	4	665	41	19	15	23	1.89
6981716--6982335	114	5.5	113	83	5	736	41	19	15	23	1.90
6997862--6997889	2	14.0	2	100	0	56	50	0	50	0	1.00
6997950--6997994	2	23.0	2	90	4	74	51	2	46	0	1.13
6997796--6997983	94	2.0	93	96	3	351	32	11	39	15	1.83
6999494--6999543	21	2.4	21	90	6	75	36	28	14	22	1.92
7005065--7005102	4	9.5	4	100	0	76	50	23	0	26	1.50
7007850--7007902	24	2.3	23	83	9	63	35	3	3	56	1.35
7013096--7013127	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7024198--7024228	2	15.5	2	100	0	62	48	0	0	51	1.00
7027976--7028057	32	2.4	35	84	6	107	40	0	2	57	1.12
7035551--7035603	24	2.2	24	83	12	65	47	1	3	47	1.31
7036006--7036080	30	2.5	30	82	8	98	38	20	20	21	1.93
7040169--7040660	262	1.9	262	85	0	689	35	11	18	34	1.87
7041958--7041995	10	3.7	10	92	3	58	73	5	21	0	1.02
7041951--7041996	20	2.2	21	80	3	58	71	6	21	0	1.08
7043972--7044028	25	2.2	24	80	17	62	56	1	5	36	1.32
7056428--7056481	3	18.0	3	92	0	90	66	3	0	29	1.09
7056580--7056607	13	2.2	13	100	0	56	39	25	14	21	1.91
7062480--7062507	2	14.0	2	100	0	56	50	0	0	50	1.00
7071540--7071633	35	2.7	35	83	0	116	46	14	15	22	1.83
7077990--7078056	21	3.0	21	76	6	53	14	55	2	26	1.54
7078161--7078227	21	3.2	20	66	8	53	28	56	5	8	1.53
7078158--7078255	42	2.3	42	94	0	178	24	59	4	12	1.50
7078145--7078240	42	2.4	39	85	10	138	25	57	4	13	1.54
7080753--7080784	15	2.1	15	94	0	55	68	0	0	31	0.90
7080749--7080859	33	3.3	32	76	17	102	64	0	2	32	1.07
7080838--7080924	33	2.6	32	85	7	102	66	1	4	27	1.18
7081633--7081657	13	1.9	13	100	0	50	40	0	0	60	0.97
7090069--7090106	2	19.5	2	89	5	60	50	0	47	2	1.15
7090127--7090162	11	3.4	11	88	7	56	0	16	0	83	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7091952--7092005	27	1.9	29	88	7	85	62	0	0	37	0.95
7099066--7099106	21	1.9	22	95	5	75	53	7	2	36	1.42
7125194--7125226	16	2.1	17	88	11	52	57	3	0	39	1.14
7125742--7125771	15	1.9	16	93	6	53	43	0	13	43	1.43
7130710--7130767	28	2.1	28	86	0	80	39	5	1	53	1.33
7130746--7130820	22	3.4	22	70	9	62	49	2	5	42	1.39
7130871--7130978	49	2.2	49	96	3	200	31	0	7	60	1.24
7130921--7131011	21	4.2	22	68	13	53	37	0	6	56	1.26
7135344--7135416	27	2.7	27	78	4	76	16	24	27	31	1.96
7135373--7135425	27	2.0	27	88	0	79	15	30	28	26	1.96
7139885--7139909	2	12.5	2	100	0	50	0	0	48	52	1.00
7145568--7145678	9	12.3	9	77	3	98	54	20	13	10	1.68
7145569--7145678	27	4.1	27	80	2	114	54	20	13	10	1.69
7149004--7149028	7	3.6	7	100	0	50	60	0	0	40	0.97
7150019--7150057	5	7.8	5	91	8	62	76	0	2	20	0.90
7150019--7150057	16	2.6	15	88	11	62	76	0	2	20	0.90
7156945--7156997	17	2.9	18	83	8	72	52	0	0	47	1.00
7157261--7157321	20	3.1	19	75	13	52	40	0	4	54	1.22
7164433--7164774	116	3.0	114	95	0	594	37	9	9	43	1.70
7170156--7170268	27	4.2	27	80	6	113	24	22	30	22	1.99
7170371--7170636	27	9.8	26	80	9	191	27	25	33	14	1.94
7170371--7170636	54	4.9	53	80	6	243	27	25	33	14	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7170371--7170636	81	3.3	80	81	5	279	27	25	33	14	1.94
7171746--7171837	47	2.0	48	85	8	127	41	18	11	28	1.86
7177586--7177612	5	5.4	5	100	0	54	81	0	18	0	0.69
7178162--7178256	2	47.5	2	90	0	145	45	0	4	49	1.21
7199282--7199339	19	2.9	19	75	17	55	37	5	1	55	1.33
7200466--7200509	20	2.2	20	92	4	72	50	2	0	47	1.13
7208352--7208405	20	2.5	21	79	11	56	20	11	14	53	1.71
7224644--7224675	12	2.6	13	85	14	50	68	0	31	0	0.90
7224904--7224933	2	15.0	2	100	0	60	0	50	0	50	1.00
7226040--7226076	2	19.5	2	89	10	60	54	0	0	45	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97