genome.fa.s9.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  36  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14985245--14985305	24	2.5	24	81	0	68	19	18	31	31	1.96
14986334--14986437	31	3.4	31	91	1	156	32	15	16	35	1.90
14987899--14988265	151	2.4	150	79	6	398	34	17	14	33	1.90
14990371--14990551	76	2.4	76	87	0	272	36	25	15	22	1.93
14990371--14990626	76	3.5	74	82	6	263	35	25	17	21	1.95
14994608--14994714	43	2.5	43	89	0	160	19	36	18	25	1.95
14996618--14996721	54	1.9	54	86	7	149	37	14	25	22	1.92
15005974--15006021	22	2.2	22	88	0	69	35	2	22	39	1.66
15007067--15007125	3	19.7	3	92	0	100	64	3	0	32	1.10
15010579--15010606	12	2.3	12	100	0	56	0	42	0	57	0.99
15010623--15010659	2	19.0	2	88	5	58	45	0	0	54	1.00
15010856--15010909	26	2.1	26	100	0	108	44	22	11	22	1.84
15015497--15015533	19	1.9	19	100	0	74	43	29	0	27	1.55
15019025--15019079	26	2.1	26	82	0	65	65	7	0	27	1.19
15019640--15020163	129	4.1	127	82	1	568	31	16	12	38	1.86
15020090--15020192	29	3.6	29	82	5	129	33	12	13	39	1.83
15030407--15030469	29	2.2	29	91	0	99	30	15	7	46	1.75
15030540--15030623	26	3.0	28	79	8	100	30	14	14	40	1.85
15030426--15030714	156	1.9	154	83	3	366	30	16	12	40	1.86
15033575--15033704	52	2.5	52	86	6	183	43	16	10	30	1.80
15039932--15039966	16	2.3	15	90	5	52	45	2	0	51	1.16
15039982--15040034	15	3.4	15	82	15	63	50	5	0	43	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15043116--15043175	21	2.9	21	79	0	66	25	11	25	38	1.89
15043178--15043304	26	5.2	26	76	12	110	25	13	25	36	1.92
15043378--15043446	22	3.2	21	75	8	68	43	23	11	21	1.85
15045259--15045343	42	2.0	42	86	0	116	61	3	9	25	1.43
15049423--15049495	38	1.9	38	97	0	137	27	8	32	31	1.86
15052906--15052960	20	2.8	20	75	10	58	29	1	27	41	1.66
15059587--15059643	24	2.4	24	76	5	62	17	15	33	33	1.92
15063965--15064067	38	2.6	39	90	4	163	21	38	18	21	1.93
15064000--15064063	19	3.4	19	68	8	58	18	40	18	21	1.91
15064927--15064976	19	2.6	19	75	12	57	44	8	36	12	1.71
15071937--15071983	25	1.9	24	82	4	58	23	8	8	59	1.54
15073218--15073289	29	2.5	29	100	0	144	40	12	19	27	1.88
15085512--15085580	34	2.0	34	97	0	129	23	18	23	34	1.96
15094648--15094709	31	2.0	32	84	6	83	41	11	8	38	1.70
15094668--15094764	29	3.4	30	75	18	91	43	11	8	37	1.71
15094600--15094827	57	4.0	55	78	10	210	37	12	9	40	1.75
15094600--15094827	28	8.0	28	79	8	228	37	12	9	40	1.75
15109552--15109598	15	3.1	15	84	0	58	31	2	12	53	1.51
15121827--15122749	355	2.7	342	90	4	1404	42	11	3	43	1.57
15122837--15122891	17	3.1	17	80	14	58	40	12	0	47	1.42
15122906--15122956	16	3.1	16	75	10	57	41	3	0	54	1.19
15123675--15123708	7	4.6	7	89	10	50	58	0	41	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15123674--15123708	14	2.3	16	85	14	56	60	0	40	0	0.97
15123783--15123843	28	2.3	26	80	5	68	62	1	3	32	1.21
15125997--15126141	73	2.0	73	98	1	274	42	8	2	46	1.48
15126016--15126127	35	3.1	34	67	20	102	42	9	2	43	1.51
15126012--15126135	39	3.3	39	71	19	136	41	8	2	45	1.48
15128757--15128795	20	2.0	20	89	0	60	23	12	33	30	1.92
15129364--15129400	19	1.9	19	94	0	65	27	0	27	45	1.54
15130581--15130616	17	2.1	17	94	0	63	55	0	8	36	1.30
15132544--15132597	22	2.5	22	84	6	65	20	9	24	46	1.79
15132330--15132839	207	2.5	207	86	0	671	21	12	25	40	1.89
15135819--15135851	13	2.5	13	95	0	57	48	9	36	6	1.60
15139092--15139494	60	6.7	60	83	5	481	34	16	12	36	1.86
15139104--15139538	61	7.2	61	82	3	477	33	17	12	37	1.86
15139105--15139514	121	3.4	121	89	0	633	33	16	12	37	1.86
15141755--15141805	23	2.2	23	96	0	93	33	31	9	25	1.88
15141755--15141819	23	2.8	23	88	0	67	33	29	13	23	1.93
15141992--15142055	23	2.8	23	85	0	83	35	28	9	26	1.87
15142112--15142174	23	2.7	24	75	7	76	30	22	12	34	1.91
15146317--15146372	23	2.4	23	82	5	60	41	28	14	16	1.87
15148788--15148847	21	2.8	22	76	5	68	16	6	30	46	1.73
15148859--15149208	26	14.5	24	77	10	263	38	25	11	25	1.89
15148859--15149192	48	7.0	47	77	9	279	37	25	11	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15148946--15149208	74	3.6	74	92	0	400	39	23	10	25	1.87
15149211--15149272	21	3.0	21	95	0	106	33	24	20	20	1.97
15148859--15149302	26	18.9	22	76	7	66	38	25	12	24	1.90
15150161--15150217	21	2.6	22	83	5	71	17	8	29	43	1.79
15150252--15150389	26	5.5	26	88	5	169	36	23	13	26	1.91
15161397--15161450	24	2.2	24	83	12	65	25	1	0	72	0.95
15161397--15161450	19	2.8	19	78	13	65	25	1	0	72	0.95
15167016--15167053	20	1.9	20	88	0	58	44	31	0	23	1.54
15167016--15167059	20	2.2	20	84	4	54	45	34	0	20	1.51
15167436--15167476	13	3.3	13	73	13	50	17	9	0	73	1.09
15167432--15167481	24	2.1	24	96	0	91	14	14	2	70	1.27
15167842--15167970	21	6.0	21	77	13	84	34	10	25	29	1.90
15167882--15167930	22	2.3	21	89	3	71	30	12	26	30	1.92
15168125--15168192	21	3.2	21	81	8	75	32	11	22	33	1.90
15167775--15168300	228	2.3	228	88	2	736	38	13	19	27	1.90
15168166--15168224	22	2.7	21	82	7	64	42	18	13	25	1.87
15168228--15168373	75	1.9	75	91	0	238	39	13	18	28	1.89
15171885--15171914	14	2.1	14	93	0	51	10	0	3	86	0.67
15177978--15178015	19	2.0	19	94	0	67	42	28	0	28	1.56
15180200--15180298	35	3.0	32	75	10	92	36	25	13	25	1.92
15187568--15187794	75	3.0	76	83	5	287	29	16	14	40	1.88
15187783--15187912	21	6.0	22	74	4	95	33	23	9	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15187785--15187928	21	6.7	21	74	12	89	34	25	10	30	1.89
15188109--15188133	8	3.1	8	100	0	50	88	0	12	0	0.53
15188308--15188366	22	2.7	23	79	7	70	84	6	8	0	0.77
15189313--15189349	13	2.9	12	85	14	56	64	0	0	35	0.94
15189469--15189510	6	7.0	6	86	8	50	61	0	2	35	1.09
15191922--15191966	16	2.8	16	80	12	56	84	4	2	8	0.84
15191922--15191969	14	3.1	14	80	14	51	83	4	2	10	0.87
15192175--15192228	13	4.2	13	77	17	60	22	5	1	70	1.18
15196615--15196659	16	2.8	16	80	12	56	84	4	2	8	0.84
15196615--15196662	14	3.1	14	80	14	51	83	4	2	10	0.87
15196868--15196921	13	4.2	13	77	17	60	22	5	1	70	1.18
15207566--15207621	29	1.9	29	82	7	69	28	3	0	67	1.07
15207563--15207623	14	4.3	14	73	8	52	27	3	0	68	1.05
15208092--15208140	14	3.5	14	77	5	55	28	0	0	71	0.86
15209278--15209604	47	7.0	45	81	3	339	25	16	35	21	1.95
15209301--15209604	94	3.2	93	89	2	450	25	16	35	22	1.94
15209303--15209604	140	2.1	141	84	5	389	25	15	36	22	1.94
15209592--15209691	53	1.9	53	91	2	166	24	20	30	26	1.98
15209594--15209710	53	2.2	52	86	4	155	25	20	28	25	1.99
15210179--15210306	31	4.1	31	85	0	157	21	16	22	39	1.92
15210285--15210348	21	3.0	21	88	0	101	20	14	20	45	1.85
15210325--15210423	31	3.2	31	80	7	121	26	19	19	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15210220--15210410	104	1.8	104	83	4	251	23	17	19	39	1.92
15212054--15212549	156	3.2	156	84	2	604	34	17	19	28	1.95
15212907--15213266	31	11.6	31	75	4	305	20	19	18	40	1.91
15215471--15215770	31	9.7	31	76	5	239	21	16	21	40	1.91
15215504--15215770	62	4.3	62	82	4	279	19	16	21	41	1.90
15215471--15215770	93	3.2	93	80	5	282	21	16	21	40	1.91
15216664--15216866	22	8.7	24	67	20	101	53	1	1	43	1.19
15216431--15216809	119	3.3	116	82	10	431	55	3	1	39	1.25
15216576--15216752	27	7.3	26	69	23	100	54	4	0	40	1.25
15216778--15216866	26	3.7	25	77	19	91	51	0	2	46	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97