genome.fa.s9.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  34  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14139179--14139206	14	2.0	14	100	0	56	42	7	21	28	1.79
14140234--14140304	23	3.1	23	70	8	72	42	2	1	53	1.24
14144473--14144512	2	20.0	2	94	0	71	50	2	0	47	1.14
14144603--14144639	2	19.0	2	88	5	58	48	2	0	48	1.15
14149708--14149751	2	22.0	2	100	0	88	0	50	0	50	1.00
14149788--14149820	2	16.5	2	87	12	50	45	3	0	51	1.16
14149827--14149871	2	22.5	2	100	0	90	0	48	0	51	1.00
14154917--14154942	2	13.0	2	100	0	52	50	0	0	50	1.00
14159762--14159796	2	17.5	2	100	0	70	48	0	0	51	1.00
14172316--14172540	55	4.2	51	77	15	215	26	11	1	60	1.40
14172323--14172566	107	2.2	111	83	10	306	25	10	1	63	1.35
14172311--14172540	54	4.3	53	77	17	242	26	11	1	60	1.41
14176107--14176132	2	13.0	2	100	0	52	50	0	0	50	1.00
14183122--14183151	14	2.1	14	100	0	60	73	6	0	20	1.05
14187346--14187405	26	2.3	26	88	0	93	36	16	13	33	1.88
14189467--14189680	109	2.0	108	92	0	356	51	14	7	25	1.69
14194371--14194405	5	7.0	5	96	0	61	37	0	22	40	1.55
14201857--14201881	13	1.9	13	100	0	50	56	16	0	28	1.41
14207286--14207346	22	2.8	22	94	0	104	29	8	21	40	1.82
14216290--14216332	2	21.5	2	100	0	86	51	0	0	48	1.00
14220119--14220157	10	3.8	10	83	6	51	82	2	15	0	0.79
14220119--14220157	16	2.5	16	91	4	62	82	2	15	0	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14223632--14223691	14	4.4	14	72	14	54	28	1	0	70	0.97
14223632--14223713	15	5.3	16	72	19	59	26	2	0	70	0.99
14223655--14223720	32	2.1	32	83	11	82	25	3	0	71	1.01
14223649--14223712	23	2.6	27	80	14	75	28	3	0	68	1.04
14225494--14225523	9	3.3	9	100	0	60	30	0	0	70	0.88
14225594--14225631	20	1.9	19	89	5	58	42	21	0	36	1.53
14231514--14231549	17	2.2	16	90	5	54	44	8	0	47	1.33
14234213--14234237	13	1.9	13	100	0	50	48	0	0	52	1.00
14235393--14235456	29	2.2	29	83	2	76	43	18	7	29	1.78
14237992--14238045	20	2.8	19	80	8	56	57	12	0	29	1.36
14238363--14238409	22	2.1	23	84	11	62	23	4	21	51	1.65
14248352--14248391	15	2.5	16	88	8	55	72	0	25	2	0.97
14252507--14252535	15	1.9	15	100	0	58	55	3	6	34	1.44
14263637--14264628	332	3.0	331	86	3	1338	32	13	19	34	1.90
14270909--14270958	16	3.2	16	82	2	57	44	0	2	54	1.11
14271667--14271724	16	3.7	16	79	4	64	44	3	1	50	1.29
14272438--14272483	15	3.1	15	83	0	56	52	2	0	45	1.13
14272873--14272920	24	2.0	24	84	12	62	39	2	14	43	1.57
14270768--14273753	748	4.0	754	92	1	4727	38	10	12	38	1.77
14273185--14273243	27	2.4	25	88	11	86	54	1	0	44	1.10
14278470--14278506	10	3.5	11	82	10	51	24	0	21	54	1.45
14284535--14284585	23	2.2	23	89	0	75	25	9	39	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14284558--14284761	57	3.6	57	83	4	241	25	16	32	25	1.96
14284826--14284901	23	3.3	23	69	20	68	34	23	22	19	1.97
14284726--14285058	141	2.4	141	84	0	432	28	22	28	21	1.99
14284724--14285058	47	7.1	47	83	2	386	28	22	28	21	1.99
14285739--14286065	31	10.5	31	86	0	431	25	16	19	39	1.92
14287456--14287743	145	2.0	145	84	1	371	31	19	19	29	1.97
14287456--14287808	145	2.4	145	78	5	338	31	19	18	30	1.96
14289925--14290117	93	2.1	93	87	0	269	29	31	15	23	1.95
14290016--14290320	118	2.6	118	90	0	466	29	29	18	22	1.98
14294172--14294311	31	4.5	31	80	3	174	38	17	15	28	1.90
14294172--14294311	62	2.3	62	84	2	192	38	17	15	28	1.90
14297207--14297256	21	2.3	22	79	3	57	26	6	20	48	1.72
14298131--14298206	27	2.8	29	78	11	88	34	14	19	31	1.92
14314468--14314527	4	15.0	4	81	13	52	71	0	5	23	1.05
14314506--14314539	17	2.1	16	88	5	50	79	0	5	14	0.91
14314899--14314932	15	2.3	15	94	0	59	70	0	26	2	1.01
14315038--14315086	18	2.8	18	79	14	57	77	0	20	2	0.87
14315038--14315082	21	2.3	19	85	11	56	77	0	20	2	0.87
14315035--14315087	23	2.3	23	81	12	65	75	0	22	1	0.90
14316565--14316810	62	4.0	62	85	3	318	28	15	30	25	1.95
14323111--14323261	35	4.6	34	75	12	136	21	11	29	37	1.89
14323114--14323285	66	2.6	66	88	4	249	23	12	28	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14323786--14323822	18	2.1	18	94	0	65	51	0	5	43	1.24
14324659--14325362	365	1.9	361	85	3	957	40	11	14	33	1.81
14326098--14326168	36	2.0	36	91	0	115	43	12	21	22	1.86
14327682--14327874	73	2.7	74	80	7	216	19	20	21	38	1.93
14338487--14338515	9	3.0	10	90	10	51	51	6	0	41	1.28
14352099--14352126	2	14.0	2	100	0	56	50	0	0	50	1.00
14352157--14352184	2	14.0	2	100	0	56	50	0	0	50	1.00
14352087--14352201	58	2.0	57	100	0	221	50	10	8	29	1.66
14352539--14352573	2	17.5	2	87	0	52	0	48	0	51	1.00
14353676--14353705	13	2.2	14	94	5	53	90	0	10	0	0.47
14359589--14359647	25	2.3	27	80	16	72	22	1	13	62	1.39
14372278--14372337	31	2.0	30	83	9	77	30	21	16	31	1.96
14372841--14372878	20	1.9	20	100	0	76	31	15	15	36	1.90
14376964--14377082	42	2.8	42	90	0	193	23	21	31	22	1.98
14377506--14377567	26	2.4	26	94	0	106	24	3	40	32	1.71
14378406--14378570	42	3.9	42	85	2	206	39	24	15	21	1.91
14385865--14385903	3	13.0	3	83	0	51	33	25	2	38	1.70
14397689--14397756	21	3.2	21	85	0	82	26	17	22	33	1.96
14406546--14406570	6	4.2	6	100	0	50	36	0	0	64	0.94
14412231--14412263	17	2.1	17	88	11	52	42	6	0	51	1.26
14412351--14412410	8	7.4	8	72	23	54	53	0	1	45	1.10
14418020--14418092	20	3.7	20	76	10	60	28	0	9	61	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14420638--14420825	73	2.6	73	88	3	281	39	18	20	22	1.92
14421684--14421737	22	2.5	22	90	0	90	24	22	24	29	1.99
14421943--14422062	43	2.8	43	93	0	204	19	35	19	25	1.95
14423003--14423114	56	2.0	57	85	1	154	37	30	11	20	1.88
14423059--14423138	35	2.3	34	84	4	106	33	33	10	22	1.87
14422966--14423144	91	2.0	91	85	2	243	37	31	11	20	1.87
14423192--14423284	34	2.7	35	84	1	125	29	23	5	41	1.76
14425684--14425724	11	3.7	11	87	9	57	78	4	17	0	0.93
14431934--14431977	22	2.0	22	90	0	70	59	0	15	25	1.37
14432743--14432955	73	2.9	73	82	1	257	38	17	22	21	1.93
14436347--14436488	42	3.4	42	91	0	221	23	32	22	21	1.98
14447762--14447938	33	5.2	33	80	3	183	32	18	16	32	1.94
14463463--14463501	14	2.8	14	92	7	62	20	2	10	66	1.33
14464825--14464856	3	10.7	3	100	0	64	31	0	0	68	0.90
14467465--14467514	17	2.9	17	81	3	64	8	10	4	78	1.09
14469028--14469073	19	2.4	19	96	0	83	43	17	0	39	1.49
14482715--14482869	78	2.0	76	89	2	238	44	19	13	22	1.85
14485408--14485608	99	2.0	99	95	0	357	40	25	13	20	1.89
14499528--14499587	20	3.0	20	78	4	66	43	13	6	36	1.70
14500556--14500634	33	2.4	33	82	2	97	34	7	7	50	1.59
14511116--14511322	107	1.9	107	90	0	324	40	13	12	34	1.82
14524181--14524319	35	4.1	35	77	9	142	28	11	24	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14524217--14524277	32	1.9	32	83	6	79	22	14	24	37	1.92
14524177--14524312	67	2.0	66	85	5	184	26	11	23	38	1.89
14524706--14524876	94	1.8	94	84	2	236	38	15	11	35	1.84
14525549--14525762	54	3.9	55	77	10	177	32	23	17	26	1.97
14528573--14528793	104	2.2	102	81	7	263	37	27	10	24	1.89
14531768--14531796	13	2.2	13	100	0	58	13	0	24	62	1.32
14532641--14532666	13	2.0	13	100	0	52	53	0	46	0	1.00
14532685--14532725	20	2.0	21	90	4	66	63	0	36	0	0.95
14532698--14532738	17	2.5	16	88	4	55	68	0	31	0	0.90
14532692--14532741	20	2.5	19	81	12	55	68	0	32	0	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97