genome.fa.s9.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  58  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23137188--23137275	33	2.7	33	89	7	135	30	0	0	69	0.89
23137147--23137267	25	4.8	25	67	24	69	32	0	0	66	1.04
23137217--23137289	39	1.9	39	86	5	105	30	0	2	67	1.05
23142218--23142255	18	2.2	18	90	4	60	47	0	18	34	1.49
23144251--23144310	30	2.0	30	87	6	86	46	6	13	33	1.69
23144251--23144310	15	4.0	15	82	4	68	46	6	13	33	1.69
23144973--23145028	27	2.1	27	83	6	71	26	0	0	73	0.84
23144935--23145020	33	2.6	33	87	7	122	30	1	0	68	0.97
23153581--23153710	68	1.9	68	90	0	206	33	6	9	50	1.59
23165544--23166163	314	2.0	312	93	2	1057	36	19	12	31	1.89
23169612--23169654	16	2.6	17	85	10	54	44	4	0	51	1.22
23185926--23185972	2	23.5	2	95	0	85	53	46	0	0	1.00
23191516--23191559	21	2.2	20	83	4	52	43	20	2	34	1.64
23193092--23193158	22	3.0	22	71	2	62	46	4	1	47	1.31
23194438--23194635	72	2.7	73	81	9	228	20	18	21	39	1.92
23198182--23198227	3	15.3	3	100	0	92	65	0	0	34	0.93
23201454--23201501	20	2.4	20	82	6	53	20	2	8	68	1.26
23203788--23203812	12	2.1	12	100	0	50	32	16	24	28	1.96
23218410--23218455	21	2.2	20	84	7	56	15	21	6	56	1.61
23218415--23218455	21	1.9	22	90	5	66	17	24	7	51	1.70
23219284--23219337	2	28.0	2	92	7	94	50	0	0	50	1.00
23219275--23219337	32	2.0	30	93	6	108	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23224367--23224425	26	2.3	26	79	5	66	1	28	3	66	1.18
23236030--23236090	25	2.4	25	86	0	77	27	36	14	21	1.93
23236497--23236531	2	16.5	2	88	11	52	48	2	2	45	1.32
23237788--23237915	56	2.3	55	81	6	134	25	27	8	38	1.85
23238489--23238549	31	2.0	31	83	0	77	24	26	4	44	1.74
23238522--23238588	31	2.2	31	84	7	93	31	19	8	40	1.82
23240572--23240719	48	3.1	48	88	3	217	25	22	8	44	1.80
23245031--23245135	43	2.4	43	81	6	115	20	36	17	25	1.94
23245929--23245967	19	2.1	19	85	0	51	35	12	35	15	1.86
23247711--23247805	48	2.0	48	93	4	165	26	26	6	41	1.79
23264198--23264315	61	1.9	61	89	0	182	39	16	8	34	1.79
23264855--23264889	2	18.0	2	94	5	63	51	0	0	48	1.00
23271226--23271250	13	1.9	13	100	0	50	52	0	0	48	1.00
23274498--23274580	18	4.6	18	78	3	60	44	12	8	34	1.72
23275572--23275765	67	2.9	66	79	6	169	35	23	12	28	1.92
23283112--23283194	41	2.0	41	97	0	157	14	25	14	45	1.82
23284477--23284581	37	2.8	37	89	2	158	32	11	34	21	1.89
23290723--23290802	2	40.5	2	92	7	137	48	0	0	50	1.01
23296147--23296251	43	2.5	43	76	6	115	28	21	14	35	1.93
23300070--23300157	43	2.1	42	91	4	142	35	14	17	32	1.90
23304753--23304788	17	2.1	17	89	0	54	61	13	8	16	1.56
23308434--23308463	13	2.3	13	94	0	51	66	10	0	23	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23315723--23315786	32	2.0	32	84	0	83	28	10	28	32	1.91
23328897--23329447	279	2.0	278	99	0	1084	35	14	12	36	1.85
23332997--23333047	21	2.4	21	86	0	66	41	15	23	19	1.90
23333155--23333196	21	2.0	22	90	4	68	47	11	19	21	1.81
23333693--23333806	50	2.3	49	83	3	147	33	13	21	32	1.91
23336226--23336265	8	5.1	8	87	6	64	0	42	0	57	0.98
23336226--23336270	15	2.9	16	90	6	74	2	42	0	55	1.12
23340978--23341020	19	2.3	18	84	4	50	41	4	2	51	1.35
23357701--23357756	27	2.1	27	83	6	69	67	7	3	21	1.30
23365417--23365544	50	2.6	50	79	4	136	34	25	10	28	1.90
23365417--23365544	49	2.6	49	76	7	134	34	25	10	28	1.90
23365902--23365941	21	2.0	21	85	5	55	37	20	20	22	1.94
23367236--23367285	2	25.5	2	87	4	75	46	0	2	52	1.12
23458682--23458939	129	2.0	128	99	0	507	36	20	10	31	1.86
23468996--23469041	20	2.3	20	92	0	74	30	4	21	43	1.72
23477087--23477158	34	2.1	35	84	2	92	54	15	2	27	1.55
23496243--23496497	42	6.0	42	81	2	269	21	34	18	25	1.96
23503189--23503436	42	5.9	42	82	1	246	20	33	20	25	1.97
23503215--23503442	126	1.8	125	81	4	289	20	32	21	25	1.98
23507943--23507988	20	2.3	20	96	0	83	28	4	21	45	1.71
23516278--23516365	44	2.0	44	86	6	124	34	15	13	36	1.87
23516148--23516348	73	2.8	69	82	7	181	31	16	13	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23517070--23517107	19	2.0	19	94	0	67	28	0	28	42	1.56
23518358--23518382	13	1.9	13	100	0	50	44	0	8	48	1.32
23522239--23522315	22	3.3	22	72	13	64	20	9	24	45	1.80
23522335--23522417	26	3.5	23	80	15	89	34	27	12	25	1.91
23522349--23522429	26	3.3	25	86	10	105	35	27	13	23	1.92
23522367--23522433	26	2.6	26	92	0	107	38	23	11	25	1.89
23522367--23522442	26	3.1	24	87	7	84	40	22	10	26	1.86
23525872--23526261	31	12.6	31	85	1	296	31	14	18	35	1.91
23525876--23526261	62	6.2	62	81	7	435	31	14	18	35	1.91
23525872--23526261	93	4.2	93	83	5	475	31	14	18	35	1.91
23527699--23528025	145	2.3	142	82	1	366	30	20	17	31	1.95
23527699--23528145	138	3.2	140	77	6	348	29	21	17	30	1.96
23536106--23536148	21	2.0	21	81	0	50	30	9	34	25	1.87
23538826--23538864	20	2.0	20	89	0	60	7	17	7	66	1.40
23541583--23541682	31	3.2	31	74	5	103	26	33	17	24	1.96
23541583--23541716	62	2.2	62	86	0	178	24	33	17	24	1.96
23541645--23541889	86	2.8	86	87	1	339	26	29	19	24	1.98
23542168--23542217	23	2.2	23	96	0	91	46	2	8	44	1.44
23549234--23549373	31	4.5	30	85	3	174	32	20	16	31	1.94
23549234--23549369	62	2.2	62	88	2	193	32	19	16	32	1.93
23550361--23550389	2	14.5	2	100	0	58	48	0	0	51	1.00
23551414--23551574	72	2.2	72	79	0	187	44	17	17	21	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23551446--23551595	72	2.1	72	81	2	167	45	17	14	22	1.85
23551614--23551667	21	2.6	21	85	2	65	42	14	16	25	1.87
23551614--23551671	20	2.9	20	82	7	64	43	13	18	24	1.87
23552322--23552428	51	2.1	51	96	1	198	38	14	4	42	1.67
23553039--23553477	179	2.5	178	87	3	614	35	12	15	35	1.86
23576565--23576602	3	12.7	3	100	0	76	68	0	0	31	0.90
23623909--23624069	79	2.1	77	83	4	198	39	6	9	43	1.65
23624052--23624096	23	2.0	23	90	0	72	35	8	13	42	1.75
23625546--23625635	38	2.4	38	96	0	162	30	31	6	32	1.83
23626505--23626558	22	2.5	23	82	11	69	50	5	27	16	1.68
23627566--23627741	95	1.9	95	90	0	280	42	14	14	28	1.85
23634390--23634443	28	2.0	28	88	3	83	29	22	18	29	1.97
23634486--23634523	19	2.0	19	100	0	76	42	31	0	26	1.56
23635969--23636485	263	2.0	259	94	1	901	35	15	17	30	1.91
23637422--23637446	13	1.9	13	100	0	50	44	0	8	48	1.32
23638660--23638698	15	2.6	15	87	0	51	33	5	12	48	1.63
23641510--23641545	17	2.1	17	90	10	56	63	16	0	19	1.30
23642281--23642429	35	4.3	35	74	10	128	32	23	17	26	1.97
23643993--23644079	40	2.1	42	82	4	106	47	13	9	29	1.74
23645303--23645421	43	2.8	43	89	2	177	21	20	37	20	1.94
23645313--23645434	43	2.8	43	87	2	165	22	18	39	19	1.92
23651865--23651916	25	2.1	25	82	7	61	21	3	5	69	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23652998--23653033	14	2.6	14	81	0	54	30	2	5	61	1.33
23675371--23675431	17	3.3	17	71	20	59	3	19	0	77	0.91
23677068--23677097	13	2.3	13	94	0	51	30	6	20	43	1.77
23680902--23680936	2	18.0	2	88	5	54	48	0	2	48	1.16
23684297--23684451	76	2.0	76	87	2	222	32	20	7	39	1.81
23684814--23684862	21	2.3	21	78	3	53	53	6	12	28	1.62
23685912--23685979	35	1.9	35	85	5	93	35	14	19	30	1.92
23708617--23708651	17	2.1	17	88	0	52	34	22	34	8	1.85
23709675--23709745	35	2.0	35	86	5	99	29	12	28	29	1.93
23716190--23716697	192	2.7	190	86	4	684	35	16	7	40	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97