genome.fa.s9.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  35  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14532690--14532837	72	2.1	72	85	2	199	60	3	34	2	1.25
14532772--14532810	14	2.7	15	84	11	55	79	0	20	0	0.73
14533767--14533812	16	3.0	16	78	18	53	78	0	2	19	0.86
14548029--14548078	14	3.5	15	79	20	54	82	0	4	14	0.82
14551053--14551097	22	2.1	21	84	12	56	48	11	2	37	1.51
14570096--14570168	33	2.2	33	83	7	94	41	9	12	36	1.75
14576744--14576776	16	2.1	17	88	11	52	39	0	6	54	1.25
14576815--14576854	2	20.0	2	100	0	80	50	0	0	50	1.00
14576394--14577512	343	3.3	340	85	5	1454	45	6	6	41	1.56
14577429--14577461	16	2.1	17	88	11	52	39	0	6	54	1.25
14577472--14577511	21	1.9	21	89	0	62	55	0	5	40	1.22
14578620--14578704	33	2.6	33	86	0	116	23	20	8	48	1.76
14580864--14580946	42	2.0	42	82	0	103	45	18	6	30	1.73
14580887--14580950	21	3.0	21	86	0	83	45	17	6	31	1.73
14583697--14583747	15	3.1	18	76	23	58	0	13	3	82	0.81
14588630--14588687	20	3.0	20	85	7	75	53	0	5	41	1.23
14591053--14591090	19	2.0	19	89	0	58	42	26	0	31	1.56
14593207--14593240	17	2.1	17	88	5	52	14	0	8	76	1.01
14596118--14596149	16	2.0	16	93	0	55	46	0	3	50	1.17
14598423--14598448	2	13.0	2	100	0	52	50	0	0	50	1.00
14602032--14602272	124	1.9	125	93	0	412	55	4	9	30	1.52
14602830--14602857	2	14.0	2	100	0	56	0	0	50	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14603418--14603648	103	2.3	101	84	6	297	26	12	24	36	1.91
14607173--14607232	30	2.0	30	90	0	93	25	13	28	33	1.93
14607867--14608242	111	3.3	111	83	7	420	17	11	26	44	1.82
14621800--14621875	36	2.1	36	97	0	143	43	14	7	34	1.74
14623633--14623689	23	2.5	23	88	0	78	29	28	19	22	1.98
14623706--14623750	23	2.0	23	86	0	63	33	37	6	22	1.80
14627742--14627786	23	2.0	23	82	8	56	35	28	11	24	1.90
14629727--14629849	65	1.9	65	88	3	185	34	8	10	46	1.70
14640165--14640197	10	3.3	10	95	0	57	0	18	15	66	1.25
14644198--14644323	32	3.8	32	75	15	123	34	26	14	25	1.94
14644167--14644361	67	2.9	66	84	6	250	35	27	12	24	1.91
14644159--14644339	35	5.4	34	74	11	133	34	25	13	26	1.93
14652177--14652263	2	45.5	2	75	8	65	49	2	0	43	1.15
14652578--14652622	16	2.6	17	79	10	56	51	0	0	48	1.00
14652672--14652723	23	2.3	23	84	15	65	9	26	30	32	1.89
14652799--14652833	18	2.1	17	89	10	54	57	2	2	37	1.29
14653934--14653966	17	1.9	17	88	11	50	42	15	3	39	1.62
14654133--14654198	28	2.4	28	86	0	96	39	10	10	39	1.75
14660169--14660214	2	24.0	2	86	8	69	50	2	0	47	1.13
14660823--14660872	14	3.4	14	79	17	57	22	8	2	68	1.26
14665007--14665122	38	3.1	38	85	2	146	38	14	14	31	1.87
14665098--14665151	26	2.0	27	89	10	85	38	9	16	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14667163--14667377	110	2.0	110	88	0	322	53	13	5	27	1.62
14722641--14722666	7	3.7	7	100	0	52	0	11	0	88	0.52
14744751--14744891	70	2.0	71	97	2	259	51	5	5	36	1.50
14752880--14752918	21	2.0	21	90	10	64	53	15	12	17	1.72
14758598--14758631	17	2.0	17	88	0	50	55	8	23	11	1.63
14765513--14765732	112	2.0	111	95	0	386	41	6	15	36	1.73
14767363--14767420	19	2.9	19	70	9	53	22	15	41	20	1.90
14775502--14775592	31	3.0	31	70	15	91	35	12	6	46	1.67
14776656--14776720	24	2.8	24	79	9	64	75	1	20	3	1.02
14780724--14780776	9	5.9	9	88	0	79	28	13	20	37	1.90
14780724--14780776	18	2.9	18	94	0	97	28	13	20	37	1.90
14789895--14789965	33	2.1	34	89	2	108	8	11	16	63	1.51
14793653--14793694	9	4.7	9	90	0	57	38	19	9	33	1.84
14793653--14793700	18	2.7	18	80	0	60	41	16	8	33	1.78
14793979--14794017	19	2.2	18	86	9	53	51	20	10	17	1.74
14795272--14795403	31	4.3	31	77	5	97	53	1	10	34	1.45
14795825--14795921	46	2.1	45	90	1	149	35	15	12	37	1.85
14797300--14797345	8	5.8	8	78	19	51	39	17	19	23	1.92
14799979--14800023	21	2.1	21	87	0	63	22	20	31	26	1.98
14804016--14804081	24	2.8	24	83	0	78	33	27	18	21	1.96
14805381--14805410	2	15.0	2	100	0	60	50	0	50	0	1.00
14806188--14806223	3	12.0	3	100	0	72	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14811145--14811192	15	3.2	15	87	0	69	47	14	4	33	1.63
14824764--14824805	21	2.0	21	95	0	75	19	26	19	35	1.95
14828736--14828773	20	1.9	20	88	0	58	21	15	28	34	1.94
14830120--14830161	22	1.9	22	90	0	66	11	19	14	54	1.70
14835571--14835612	20	2.1	20	90	0	66	23	14	26	35	1.93
14843121--14843214	37	2.5	37	98	0	179	31	13	14	39	1.86
14850162--14850201	2	20.0	2	100	0	80	50	0	0	50	1.00
14859568--14859637	36	1.9	36	97	0	131	25	22	10	41	1.85
14864549--14864709	85	1.9	81	86	5	223	33	26	20	19	1.96
14866700--14866752	2	27.0	2	92	3	90	47	0	0	52	1.00
14870737--14870770	2	17.0	2	87	0	50	50	0	2	47	1.16
14870781--14871197	213	2.0	212	89	1	647	41	19	10	27	1.85
14871189--14871229	2	20.5	2	100	0	82	48	0	0	51	1.00
14876031--14876080	21	2.4	21	89	0	73	44	16	8	32	1.76
14876120--14876224	35	3.0	35	87	2	140	29	32	10	27	1.90
14880116--14880155	19	2.0	20	90	4	64	70	0	2	27	1.01
14889436--14889460	13	1.9	13	100	0	50	48	8	0	44	1.32
14892710--14892753	15	2.9	15	74	12	54	54	13	4	27	1.58
14894120--14894144	13	1.9	13	100	0	50	48	8	0	44	1.32
14898414--14898460	20	2.3	20	88	0	67	42	25	2	29	1.67
14899912--14899941	15	2.0	15	93	0	51	10	36	13	40	1.78
14900264--14900316	8	6.2	8	75	12	52	81	0	1	16	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14900266--14900316	22	2.4	21	83	12	68	80	0	1	17	0.81
14900264--14900316	14	3.8	13	77	22	54	81	0	1	16	0.79
14903840--14903902	21	3.0	21	85	0	81	26	17	15	39	1.90
14914634--14914687	20	2.8	19	80	8	56	57	12	0	29	1.36
14916239--14916277	21	1.9	20	89	5	60	23	17	5	53	1.63
14926425--14926464	20	2.0	20	95	0	71	35	12	17	35	1.88
14942201--14942294	24	3.9	24	79	6	93	44	6	44	4	1.49
14942201--14942294	48	2.0	48	83	12	122	44	6	44	4	1.49
14942259--14942328	34	2.1	34	83	0	86	37	7	50	5	1.54
14942189--14942297	24	4.6	23	71	10	67	43	6	45	4	1.50
14942211--14942362	82	1.9	82	87	2	225	41	7	46	5	1.54
14942293--14942366	24	3.1	24	84	1	96	37	6	50	5	1.52
14942237--14942351	58	2.0	58	86	3	160	39	7	48	4	1.52
14942306--14942382	24	3.3	24	83	7	79	42	6	46	3	1.48
14949840--14949971	33	4.1	33	80	7	146	9	50	8	31	1.64
14950047--14950117	22	3.5	22	69	25	66	18	2	30	47	1.63
14950065--14950095	15	2.0	16	93	6	55	6	0	38	54	1.26
14950036--14950119	37	2.2	38	87	2	125	17	3	29	48	1.64
14952554--14952760	84	2.5	84	80	4	229	40	9	7	42	1.65
14953227--14953257	16	1.9	16	93	0	53	19	3	0	77	0.90
14959306--14959330	13	1.9	13	100	0	50	48	0	0	52	1.00
14963900--14963952	25	2.1	25	82	6	63	52	1	0	45	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14963910--14963968	25	2.5	25	83	8	70	57	1	1	38	1.19
14963917--14963971	25	2.2	25	86	0	74	58	0	1	40	1.09
14983993--14984103	57	1.9	58	83	1	143	27	9	30	32	1.88
14984099--14984147	23	2.1	23	92	0	80	32	6	36	24	1.80
14984157--14984305	23	6.6	23	76	9	126	34	12	28	24	1.92
14984106--14984279	67	2.5	68	82	7	201	35	10	29	24	1.89
14984157--14984305	46	3.3	46	77	5	151	34	12	28	24	1.92
14984356--14984597	23	10.0	23	68	15	96	30	12	30	26	1.93
14984224--14984540	126	2.5	127	82	1	386	29	12	31	26	1.93
14984545--14984611	23	2.9	23	79	0	71	28	14	31	25	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97