Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  97  of  97  ( 11551 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38619502--38619568
33
2.1
32
86
8
91
53
13
2
29
1.54
38619660--38619714
22
2.7
21
81
10
69
41
18
1
38
1.61
38619926--38620023
21
4.6
21
81
5
81
47
17
4
30
1.66
38619940--38620166
53
4.3
52
70
12
126
50
14
5
29
1.65
38619878--38620023
10
14.0
10
72
12
98
48
15
5
30
1.68
38619951--38620166
107
2.0
105
80
3
236
50
14
5
30
1.64
38620378--38620424
22
2.1
22
88
7
69
59
14
0
25
1.36
38620369--38620562
106
1.8
106
80
4
230
46
15
4
33
1.65
38620470--38620541
32
2.3
31
79
9
83
44
13
4
37
1.64
38620526--38620550
11
2.3
11
100
0
50
52
8
0
40
1.31
38620785--38620853
32
2.2
33
78
7
79
56
10
5
27
1.55
38621170--38621276
10
10.2
11
71
9
55
51
12
4
31
1.60
38621170--38621251
32
2.5
32
80
5
85
53
10
6
29
1.60
38621204--38621276
22
3.5
20
80
9
76
50
15
2
31
1.58
38621204--38621271
32
2.1
32
86
0
91
54
14
2
27
1.55
38621184--38621402
95
2.3
94
81
6
262
50
13
5
30
1.64
38621202--38621334
32
4.2
30
70
16
90
50
13
6
30
1.65
38621578--38621637
22
2.8
22
85
9
72
51
11
6
30
1.64
38621604--38621664
31
2.0
31
87
3
88
47
14
4
32
1.66
38621603--38621669
21
3.1
22
83
10
77
49
13
5
31
1.66
38621531--38621664
10
13.0
10
71
17
87
48
13
5
32
1.66
38621678--38621753
31
2.5
30
80
12
84
47
17
3
31
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38622367--38622443
31
2.5
31
82
10
88
32
3
16
46
1.66
38622457--38622590
10
13.0
10
70
17
87
32
5
13
48
1.66
38622452--38622501
21
2.4
21
90
6
75
36
4
16
44
1.66
38622462--38622552
21
4.4
20
78
8
85
31
5
12
50
1.62
38622462--38622562
31
3.2
29
77
14
80
31
6
10
50
1.64
38622484--38622543
22
2.8
22
85
9
72
30
6
11
51
1.64
38622652--38622697
11
4.4
11
81
8
51
15
6
8
69
1.34
38622745--38623239
7
71.3
7
85
5
405
10
8
42
39
1.69
38623024--38623067
16
2.8
16
96
0
79
6
6
36
50
1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97

The End!