genome.fa.s9.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  63  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25430272--25430359	44	2.0	44	82	8	108	36	11	13	38	1.81
25434841--25434885	18	2.5	18	79	10	56	26	0	0	73	0.84
25437015--25437241	27	8.3	27	74	5	188	39	18	10	31	1.85
25437015--25437254	54	4.4	54	81	5	254	38	19	10	32	1.85
25437014--25437227	82	2.6	80	76	9	209	39	18	10	32	1.84
25437017--25437227	109	1.9	109	89	3	327	39	18	9	32	1.83
25437028--25437254	109	2.1	108	84	4	296	38	18	10	32	1.85
25437371--25437418	20	2.4	20	96	0	87	31	22	18	27	1.97
25437510--25437553	22	2.0	23	86	13	65	31	11	0	56	1.35
25441594--25441732	50	2.8	50	84	0	188	33	7	15	42	1.76
25453913--25453976	28	2.2	29	83	2	76	43	20	7	28	1.79
25459399--25459591	64	3.0	64	93	0	341	39	13	10	35	1.80
25470345--25470484	24	5.8	24	83	3	174	41	20	17	20	1.91
25470528--25470602	26	3.0	24	81	11	89	37	18	18	25	1.94
25470458--25470626	76	2.1	77	86	6	223	37	18	17	26	1.93
25470630--25470721	27	3.3	27	84	3	112	45	13	6	34	1.69
25470861--25470890	15	2.0	15	100	0	60	53	26	6	13	1.64
25480277--25480388	49	2.3	49	89	3	163	23	29	16	30	1.96
25491697--25491766	2	34.5	2	90	5	106	1	47	0	50	1.10
25497314--25497358	23	2.0	23	95	0	81	31	8	13	46	1.74
25508133--25508200	21	3.3	21	68	15	70	17	39	25	17	1.91
25508119--25508257	40	3.5	40	90	1	201	18	39	20	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25508154--25508261	19	5.6	19	67	12	76	20	38	18	22	1.93
25531246--25531278	16	2.1	16	88	5	50	15	9	27	48	1.74
25540963--25541055	42	2.3	42	81	7	102	48	0	2	49	1.13
25545033--25545078	24	2.0	24	91	4	76	39	23	10	26	1.88
25561028--25561218	63	3.0	63	78	5	199	42	15	16	25	1.87
25567837--25567872	2	18.0	2	100	0	72	50	0	0	50	1.00
25581046--25581089	11	4.3	11	78	21	51	68	9	22	0	1.18
25588508--25588540	11	3.0	11	87	12	50	66	9	24	0	1.20
25595728--25595777	16	3.4	16	73	21	54	22	2	16	60	1.46
25595726--25595780	28	2.0	28	96	0	101	20	1	16	61	1.43
25602848--25602877	2	15.5	2	93	6	53	53	0	46	0	1.00
25604308--25604348	2	20.5	2	100	0	82	51	0	0	48	1.00
25604556--25604596	2	20.5	2	100	0	82	51	0	0	48	1.00
25604307--25604798	248	2.0	247	99	0	975	34	17	16	31	1.92
25615836--25615895	28	2.2	27	81	3	66	40	5	13	41	1.66
25616338--25616392	28	2.0	28	89	7	85	41	18	12	27	1.86
25618190--25618383	100	2.0	97	87	6	277	18	11	22	47	1.80
25618213--25618416	100	2.1	98	80	6	223	19	13	22	45	1.84
25624325--25626238	954	2.0	954	97	0	3648	24	19	24	31	1.98
25628388--25628425	6	6.3	6	100	0	76	31	50	18	0	1.47
25631199--25631272	29	2.6	29	84	0	94	43	12	29	14	1.82
25633225--25633296	2	36.0	2	90	5	110	45	2	50	1	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25643804--25643861	30	2.0	29	86	10	82	12	12	1	74	1.16
25652486--25652549	10	6.4	10	74	5	58	7	6	3	82	0.92
25652931--25652967	14	2.4	16	82	13	51	83	0	8	8	0.80
25652931--25652968	15	2.5	16	83	8	53	81	0	7	10	0.87
25653160--25653216	21	2.7	20	84	10	69	10	8	0	80	0.90
25656380--25656423	22	2.0	22	100	0	88	36	27	9	27	1.87
25661086--25661111	13	2.0	13	100	0	52	46	7	0	46	1.31
25664526--25664559	2	17.0	2	100	0	68	50	0	0	50	1.00
25665491--25665584	32	3.3	29	73	22	83	34	18	13	34	1.90
25665538--25665617	24	3.2	24	74	11	72	28	18	15	37	1.91
25665536--25665612	26	3.0	25	80	16	95	27	18	15	38	1.91
25665587--25665680	45	2.1	45	89	0	143	23	18	20	38	1.93
25665729--25665779	24	2.1	24	88	0	75	19	17	21	41	1.91
25665736--25665786	24	2.1	24	85	0	66	21	15	21	41	1.90
25665632--25666170	69	7.9	69	74	11	322	25	17	19	37	1.94
25665760--25665869	45	2.4	45	80	0	121	26	17	18	38	1.92
25665686--25666178	114	4.3	114	76	7	406	25	17	19	37	1.94
25665847--25665896	24	2.1	24	88	0	73	20	14	20	46	1.84
25665867--25666035	45	3.8	45	89	0	212	24	17	20	37	1.93
25665760--25666101	159	2.1	160	86	2	465	25	18	19	36	1.94
25665976--25666161	70	2.7	69	87	0	246	26	17	18	37	1.93
25671155--25671189	2	17.5	2	87	0	52	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25671155--25671185	12	2.6	12	100	0	62	58	0	0	41	0.98
25671691--25671748	18	3.4	18	68	22	61	22	10	3	63	1.40
25671708--25671763	15	3.5	15	69	21	51	17	8	1	71	1.21
25671686--25671766	33	2.5	33	97	0	153	22	9	3	64	1.40
25677392--25677450	2	29.0	2	89	3	91	45	1	0	50	1.11
25688333--25689380	352	3.0	343	84	6	1348	44	7	7	40	1.61
25696645--25696703	8	7.2	8	74	16	50	49	0	1	49	1.11
25696645--25696682	17	2.2	18	86	13	53	47	0	0	52	1.00
25696656--25696703	22	2.2	22	82	14	55	47	0	2	50	1.12
25696775--25696827	25	2.1	25	82	6	63	52	1	0	45	1.11
25702377--25702409	2	16.5	2	100	0	66	48	0	0	51	1.00
25721481--25721516	16	2.2	16	95	0	63	52	2	44	0	1.15
25722706--25722810	48	2.2	48	89	0	156	22	9	25	41	1.84
25722822--25722865	22	2.0	23	90	4	72	25	15	20	38	1.92
25724378--25724427	22	2.3	22	89	0	73	16	10	26	48	1.77
25724203--25724468	119	2.2	120	87	0	354	18	10	24	46	1.80
25730384--25730540	61	2.6	61	76	6	149	31	21	10	36	1.88
25732357--25732417	25	2.6	23	85	10	86	29	34	11	24	1.91
25732433--25732505	23	3.2	22	76	7	74	32	28	10	27	1.91
25732537--25732683	46	3.2	46	68	9	120	31	29	10	27	1.90
25732603--25732660	23	2.5	23	82	0	62	34	27	12	25	1.91
25733024--25733084	26	2.5	23	80	17	77	59	6	13	21	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25733031--25733083	26	2.0	26	96	0	97	58	7	13	20	1.59
25734886--25734935	24	2.1	24	88	7	75	36	16	44	4	1.66
25734969--25735022	24	2.2	24	87	6	74	35	11	38	14	1.82
25743150--25743335	55	3.4	55	78	1	203	12	12	31	43	1.81
25743383--25743464	31	2.6	31	84	3	85	28	17	21	32	1.96
25747610--25747832	31	7.2	31	84	0	241	37	20	17	25	1.94
25748386--25748432	23	2.2	20	82	14	51	48	2	12	36	1.53
25748381--25748511	52	2.5	51	80	4	138	47	3	12	35	1.60
25748465--25748536	16	4.7	16	78	14	62	48	4	8	38	1.53
25748484--25748542	16	3.7	15	84	8	73	54	1	6	37	1.37
25750081--25750378	31	9.6	31	81	2	321	39	21	16	22	1.91
25750737--25751196	153	3.0	156	85	3	640	26	20	19	33	1.96
25750750--25751266	156	3.3	153	83	2	390	28	19	18	33	1.96
25752868--25753151	31	9.2	31	88	0	388	38	19	17	24	1.93
25753634--25753753	53	2.3	53	86	0	150	28	29	16	25	1.97
25753741--25754182	47	9.4	47	86	2	564	20	32	18	28	1.96
25754731--25754769	19	2.0	20	85	5	53	38	0	2	58	1.12
25755469--25755504	17	2.1	17	90	10	56	50	0	5	44	1.25
25759772--25759912	23	6.2	22	78	9	97	36	21	12	29	1.90
25759782--25759860	22	3.6	22	81	8	72	43	16	11	29	1.83
25759768--25759869	44	2.3	46	87	3	145	39	18	11	30	1.87
25763030--25763094	29	2.2	29	77	20	73	38	13	0	47	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25763146--25763196	27	2.0	26	82	14	63	47	3	0	49	1.20
25766742--25766840	34	2.9	34	82	8	103	29	12	27	31	1.92
25766779--25766851	34	2.2	33	82	7	85	31	12	26	30	1.92
25767451--25767504	22	2.5	22	75	0	63	55	1	1	40	1.21
25767484--25767672	38	4.7	38	65	23	93	56	2	1	39	1.20
25767913--25767990	37	2.1	37	81	11	90	60	1	1	37	1.13
25767974--25768079	42	2.6	40	83	8	124	51	1	1	44	1.23
25767979--25768079	22	4.8	20	70	17	80	51	1	1	44	1.24
25768481--25768613	52	2.6	52	87	2	169	26	9	11	52	1.68
25769515--25769609	48	1.9	50	85	8	133	42	5	3	49	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97