genome.fa.s9.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  23  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9818823--9818874	12	4.2	12	80	5	50	75	0	25	0	0.81
9818842--9818873	15	2.1	16	94	5	57	84	0	15	0	0.63
9819227--9819270	11	3.9	11	82	11	54	77	2	2	18	0.98
9831622--9831685	32	2.0	32	90	0	101	46	15	6	31	1.71
9833015--9833041	10	2.7	10	100	0	54	11	11	25	51	1.70
9841377--9841422	19	2.4	20	82	10	60	54	0	2	43	1.12
9844944--9844985	15	2.9	15	92	3	68	23	0	16	59	1.37
9853685--9853736	28	1.9	27	81	14	63	28	19	19	32	1.96
9853790--9853827	20	1.9	20	100	0	76	44	21	5	28	1.73
9857426--9857517	24	3.6	24	69	18	69	34	11	16	36	1.85
9860573--9860623	25	2.0	26	84	3	68	47	1	7	43	1.43
9863210--9863242	14	2.2	16	89	10	52	36	3	0	60	1.12
9865652--9865697	19	2.4	20	82	10	60	54	0	2	43	1.12
9872093--9872132	20	2.1	19	86	9	55	35	22	17	25	1.95
9879987--9880029	22	2.0	22	85	0	59	27	0	9	62	1.25
9882351--9882404	28	2.0	27	82	7	65	27	3	0	68	1.06
9885431--9885468	15	2.5	15	91	0	58	15	21	15	47	1.82
9906238--9906288	25	2.0	25	92	0	84	39	15	17	27	1.90
9910316--9910372	29	2.0	28	83	10	71	36	14	15	33	1.88
9919948--9919987	19	2.0	20	85	4	55	10	12	2	75	1.15
9920433--9920491	22	2.7	22	89	0	82	30	25	22	22	1.99
9927218--9927251	17	2.0	17	88	0	50	58	23	5	11	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9940607--9940637	6	5.2	6	92	0	53	32	32	3	32	1.74
9956479--9956519	16	2.4	17	80	19	50	34	0	26	39	1.57
9957878--9957909	15	2.1	16	94	5	57	53	6	0	40	1.26
9958227--9958284	21	2.8	20	79	7	55	51	1	3	43	1.28
9958246--9958323	25	3.2	25	77	10	65	47	2	2	47	1.29
9959155--9959199	19	2.3	20	81	11	58	60	0	20	20	1.37
9960248--9960373	43	3.0	43	80	10	134	27	16	31	23	1.96
9960449--9960481	2	16.5	2	100	0	66	48	0	0	51	1.00
9975769--9975797	14	2.0	15	93	6	51	48	10	20	20	1.79
9976664--9976705	19	2.2	19	83	8	50	59	0	19	21	1.38
9977770--9977898	43	3.0	42	86	5	170	26	19	31	23	1.98
9984212--9984244	11	3.1	11	86	4	50	27	3	15	54	1.55
9994698--9994735	18	2.1	18	90	9	60	57	23	0	18	1.40
9994701--9994742	18	2.3	19	83	4	59	59	26	0	14	1.35
9997216--9997291	37	2.1	37	94	0	134	21	9	26	43	1.82
9997842--9998039	73	2.7	73	86	0	252	40	15	19	24	1.90
10004421--10004463	19	2.4	17	85	11	59	23	2	2	72	1.08
10005788--10005827	2	22.0	2	80	19	52	47	0	0	52	1.00
10005788--10005824	13	2.6	15	83	16	60	45	0	0	54	1.00
10005785--10005826	13	2.8	16	75	24	54	45	0	0	54	0.99
10005864--10005969	49	2.2	48	91	3	167	32	6	6	54	1.52
10012049--10012073	13	1.9	13	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10017782--10017814	17	2.0	16	94	5	57	57	0	6	36	1.23
10018213--10018300	2	45.0	2	77	17	87	48	2	1	46	1.22
10019002--10019044	12	3.5	12	79	14	52	67	6	0	25	1.15
10020265--10020354	45	2.0	45	86	0	126	38	23	12	25	1.89
10020411--10020437	13	2.1	13	100	0	54	29	29	11	29	1.91
10023644--10023687	20	2.3	19	88	11	72	81	0	18	0	0.68
10035366--10035491	42	3.0	42	86	1	153	22	32	18	26	1.97
10049771--10049823	4	13.0	4	84	6	54	22	3	1	71	1.12
10058851--10058890	2	19.5	2	94	5	71	50	2	0	47	1.14
10060164--10060197	15	2.3	15	90	10	52	52	0	0	47	1.00
10060204--10060237	16	2.1	16	88	0	50	47	5	8	38	1.59
10060457--10060490	18	1.9	17	88	5	50	41	0	5	52	1.25
10061947--10061991	21	2.1	23	84	12	60	33	0	8	57	1.30
10075808--10075838	16	1.9	16	93	0	53	48	3	19	29	1.64
10077765--10077800	17	2.1	17	90	10	56	50	0	0	50	1.00
10077869--10077902	2	17.0	2	100	0	68	50	0	0	50	1.00
10077704--10077904	104	1.9	104	96	3	370	33	10	7	46	1.68
10081266--10081302	19	1.9	19	94	0	65	29	0	27	43	1.55
10088484--10088600	60	2.0	60	88	6	175	31	23	19	25	1.98
10088899--10088939	2	20.5	2	94	0	73	48	0	2	48	1.14
10089050--10089159	43	2.5	44	86	2	152	21	37	16	24	1.93
10092126--10092166	21	2.1	19	86	9	55	60	9	0	29	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10096807--10096849	16	2.7	15	82	13	50	25	0	9	65	1.22
10103470--10103525	26	2.2	26	80	6	60	28	0	8	62	1.25
10122495--10122520	13	2.0	13	100	0	52	15	0	0	84	0.62
10127097--10127139	21	2.0	22	90	4	70	39	2	0	58	1.11
10127193--10127250	27	2.3	26	82	8	66	44	1	3	50	1.29
10127450--10127496	21	2.3	21	85	10	62	42	2	0	55	1.12
10127502--10127568	27	2.4	29	82	7	86	46	2	0	50	1.16
10127647--10127725	21	3.4	21	67	21	59	36	2	2	56	1.26
10127118--10127689	313	1.8	313	89	2	907	41	3	2	52	1.31
10127752--10127809	17	3.6	16	81	9	64	22	8	0	68	1.16
10132974--10133079	38	2.7	39	82	5	126	22	40	15	21	1.90
10139091--10139212	60	2.1	59	81	7	140	47	19	10	22	1.80
10140949--10140994	20	2.3	20	85	7	58	26	0	10	63	1.27
10150337--10150383	21	2.3	21	82	7	62	25	0	10	63	1.26
10153706--10153863	43	3.7	43	81	3	176	22	33	18	25	1.97
10153706--10153863	86	1.8	86	83	2	210	22	33	18	25	1.97
10171071--10171114	2	22.0	2	90	0	70	45	0	4	50	1.22
10181672--10181711	20	2.0	20	85	0	53	40	12	15	32	1.84
10181907--10181937	15	2.1	15	93	0	53	45	6	9	38	1.63
10184835--10184940	30	3.5	30	85	2	151	40	16	21	20	1.91
10192739--10192780	21	2.0	21	85	0	57	19	26	19	35	1.95
10193157--10193275	43	2.8	43	85	2	150	21	36	18	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10201374--10201444	28	2.6	28	81	2	72	19	14	16	49	1.80
10201406--10201509	37	2.8	37	94	0	172	19	18	16	46	1.85
10201507--10201584	40	2.0	40	89	0	120	23	28	10	38	1.87
10201547--10201614	33	2.1	33	86	5	93	22	26	11	39	1.88
10208521--10208554	17	2.0	17	88	0	50	55	14	0	29	1.40
10212254--10212303	17	2.9	17	80	11	50	44	6	2	48	1.39
10212619--10212663	18	2.5	18	85	7	56	53	0	2	44	1.13
10213028--10213053	6	4.3	6	100	0	52	19	0	46	34	1.50
10213957--10214127	85	2.0	85	100	0	342	35	16	11	36	1.85
10219503--10219589	45	1.9	45	90	0	138	35	26	16	21	1.94
10220606--10220642	18	2.1	18	90	5	58	8	16	2	72	1.19
10257977--10258018	21	2.1	20	82	8	50	28	0	7	64	1.20
10261189--10261235	20	2.3	21	81	3	60	51	0	8	40	1.33
10272778--10272975	68	2.9	68	86	0	261	36	12	20	31	1.89
10274464--10274543	35	2.2	36	80	2	90	42	27	8	21	1.82
10278602--10278645	18	2.4	18	96	0	79	29	22	9	38	1.85
10286769--10286827	32	1.9	30	86	6	82	54	3	0	42	1.17
10288754--10288809	26	2.2	26	86	0	76	35	12	5	46	1.65
10288776--10288917	28	5.3	27	72	12	96	33	15	7	44	1.73
10288777--10288916	26	5.3	26	73	11	97	33	15	7	43	1.74
10288776--10288917	29	5.2	29	72	13	106	33	15	7	44	1.73
10288807--10288885	24	3.2	24	77	7	86	32	17	10	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10290175--10290244	34	2.1	34	88	0	104	37	14	8	40	1.76
10292065--10292106	22	1.9	22	85	0	57	59	11	2	26	1.45
10293142--10293175	15	2.3	15	89	0	50	41	5	2	50	1.42
10293201--10293233	15	2.1	17	88	11	52	51	6	3	39	1.42
10293860--10294053	91	2.1	91	99	0	379	32	18	24	24	1.97
10300842--10300949	32	3.3	31	75	19	112	32	23	15	28	1.95
10300818--10301033	66	3.3	66	86	3	292	32	25	14	27	1.95
10301569--10301611	24	1.9	22	86	13	61	23	27	4	44	1.73
10301911--10301951	16	2.6	16	96	0	73	31	14	21	31	1.94
10310486--10310547	25	2.5	25	80	12	74	8	20	4	66	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97