genome.fa.s9.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  65  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26214957--26214998	16	2.6	16	92	7	68	28	47	0	23	1.52
26215604--26215694	44	2.1	44	97	0	173	39	14	17	28	1.89
26219843--26219882	21	1.9	21	94	0	71	35	17	15	32	1.91
26235521--26235670	60	2.5	61	81	5	187	34	23	19	23	1.97
26252137--26252370	31	7.5	31	79	0	216	38	18	15	26	1.91
26252130--26252372	93	2.6	93	86	0	315	37	19	15	27	1.92
26252482--26252594	31	3.6	31	68	11	79	21	20	29	29	1.98
26252742--26252806	14	4.3	14	75	17	51	53	1	7	36	1.39
26252744--26252811	16	4.3	15	74	18	59	50	2	8	38	1.49
26252745--26252806	31	1.9	31	87	6	88	53	1	8	37	1.40
26252745--26252792	17	2.9	16	78	9	51	50	2	8	39	1.44
26252647--26252825	47	3.7	47	76	10	164	48	4	11	35	1.59
26254358--26254624	31	8.6	31	79	2	286	36	20	18	23	1.95
26254980--26255304	156	2.1	156	85	3	431	29	20	17	32	1.95
26256963--26257197	31	7.6	30	89	0	263	36	22	17	22	1.95
26256963--26257197	62	3.8	62	87	1	310	36	22	17	22	1.95
26256973--26257197	93	2.4	93	84	1	299	36	24	17	21	1.95
26257715--26258066	47	7.5	47	84	1	400	22	33	16	27	1.95
26257723--26257799	24	3.2	24	68	17	79	22	33	16	27	1.95
26257714--26258111	141	2.8	141	84	0	483	23	33	16	27	1.96
26261058--26261097	21	1.9	21	89	0	62	40	2	10	47	1.50
26264155--26264560	202	2.0	202	96	0	742	34	12	10	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26290028--26290072	18	2.4	18	85	7	54	57	11	22	8	1.60
26314385--26314409	13	1.9	13	100	0	50	44	0	8	48	1.32
26319964--26320086	28	4.6	28	86	5	150	16	17	12	53	1.72
26320072--26320116	5	8.8	5	83	13	56	4	15	2	77	1.02
26320072--26320116	21	2.2	20	88	4	63	4	15	2	77	1.02
26320072--26320116	16	2.9	15	87	9	56	4	15	2	77	1.02
26320139--26320186	22	2.2	22	92	0	78	10	45	8	35	1.68
26320323--26320466	23	6.2	23	86	3	216	32	27	8	31	1.86
26320319--26320466	47	3.2	47	93	0	253	32	27	9	31	1.88
26320323--26320466	70	2.1	70	89	2	218	32	27	8	31	1.86
26320440--26320544	34	3.1	34	95	1	183	33	22	14	29	1.94
26320692--26320739	25	1.9	26	87	8	73	27	27	6	39	1.80
26322900--26323097	74	2.7	74	84	6	258	18	19	19	43	1.88
26330108--26330311	73	2.8	73	82	5	268	19	18	18	44	1.87
26331736--26331942	102	2.0	102	86	1	290	37	13	13	36	1.84
26332211--26332272	27	2.3	27	88	0	88	51	4	17	25	1.65
26346373--26346459	35	2.4	35	90	3	129	40	14	0	44	1.46
26347149--26347194	19	2.4	20	82	10	60	54	0	2	43	1.12
26380688--26381626	252	3.8	248	76	10	861	34	12	7	45	1.70
26380987--26381424	231	1.9	232	82	3	560	35	12	7	44	1.71
26384743--26386886	252	8.4	250	78	6	1803	43	7	14	34	1.72
26385480--26385517	20	1.9	20	100	0	76	55	7	10	26	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26384767--26386980	524	4.4	510	79	7	1809	43	6	14	35	1.72
26394405--26394429	2	12.5	2	100	0	50	52	0	0	48	1.00
26398494--26398585	35	2.6	35	91	0	139	43	13	19	23	1.86
26398488--26398606	35	3.4	35	84	1	123	41	15	19	24	1.89
26400576--26400759	98	1.9	98	82	4	237	21	21	13	43	1.87
26401744--26401781	17	2.2	17	90	9	60	78	2	0	18	0.86
26407891--26407992	21	4.9	21	79	1	98	26	26	12	34	1.92
26407891--26407992	42	2.5	42	83	1	116	26	26	12	34	1.92
26408051--26408112	21	3.0	21	83	4	72	50	14	6	29	1.68
26408066--26408118	21	2.6	20	76	8	54	50	16	5	26	1.67
26408234--26408298	21	3.1	21	77	4	69	44	15	9	30	1.78
26415866--26415916	21	2.4	21	86	3	66	25	29	23	21	1.99
26416178--26416260	42	2.0	42	87	0	121	21	32	22	22	1.98
26424419--26424464	20	2.3	20	88	7	67	32	4	17	45	1.68
26424509--26424561	28	1.9	27	88	3	79	30	18	22	28	1.98
26424509--26424567	28	2.1	28	84	6	75	30	20	23	25	1.98
26428763--26428804	22	1.9	22	85	9	59	45	11	2	40	1.54
26428793--26428983	57	3.3	56	83	7	231	39	11	8	40	1.72
26428793--26428983	28	6.6	28	83	9	215	39	11	8	40	1.72
26430754--26430788	18	2.0	17	88	5	52	60	0	20	20	1.37
26434053--26434111	21	2.8	22	92	5	95	28	13	27	30	1.94
26438885--26438930	19	2.3	21	85	7	60	52	2	2	43	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26438885--26438930	21	2.3	19	85	7	56	52	2	2	43	1.25
26440242--26440301	30	2.1	29	81	6	68	31	8	21	38	1.83
26448423--26448482	30	2.1	29	81	6	68	31	8	21	38	1.83
26452490--26452563	21	3.6	20	83	3	85	31	18	9	40	1.83
26452618--26452663	23	2.0	23	86	0	65	39	10	13	36	1.79
26455238--26455279	2	21.0	2	100	0	84	50	0	0	50	1.00
26455295--26455336	2	21.0	2	100	0	84	50	0	0	50	1.00
26470779--26470935	63	2.5	63	85	4	210	25	18	29	26	1.98
26473536--26473676	38	3.7	38	85	3	185	20	14	40	24	1.90
26481444--26481587	60	2.4	59	80	5	164	36	22	18	22	1.95
26481952--26482076	43	2.9	43	84	3	162	20	38	19	22	1.94
26489565--26489594	14	2.1	15	93	6	53	16	20	13	50	1.78
26490876--26491073	73	2.7	74	85	6	246	21	20	21	36	1.95
26495816--26495863	21	2.3	20	79	10	60	14	22	6	56	1.61
26495821--26495861	21	1.9	22	90	5	66	17	24	7	51	1.70
26500454--26500515	22	2.8	22	90	0	97	41	24	6	27	1.79
26502839--26502884	21	2.2	20	84	7	56	15	21	6	56	1.61
26502844--26502884	21	1.9	22	90	5	66	17	24	7	51	1.70
26517229--26517277	20	2.5	20	86	3	64	67	2	8	22	1.28
26541496--26541589	29	3.3	29	90	1	154	38	8	13	39	1.76
26541577--26541602	13	2.0	13	100	0	52	46	7	15	30	1.74
26541548--26541631	42	2.0	42	95	4	152	39	8	14	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26544762--26544820	22	2.7	22	81	0	73	28	11	23	35	1.91
26545034--26545088	22	2.5	22	87	0	83	20	16	27	36	1.93
26545116--26545194	23	3.6	22	77	13	74	17	11	25	45	1.82
26547206--26547241	17	2.1	18	89	5	56	66	13	0	19	1.24
26550550--26550584	17	2.1	17	94	0	61	31	8	31	28	1.87
26551930--26552236	72	4.3	71	75	5	242	26	17	20	35	1.94
26552519--26552564	19	2.4	20	82	10	60	54	0	2	43	1.12
26552966--26553003	20	1.9	20	94	0	67	28	7	18	44	1.78
26571178--26571264	39	2.2	40	87	8	124	24	25	22	27	2.00
26573259--26573323	22	3.0	22	81	0	76	46	21	12	20	1.83
26573341--26573430	39	2.4	38	81	3	101	32	33	12	22	1.91
26575576--26575604	14	2.0	15	93	6	51	72	0	27	0	0.85
26579942--26579981	5	8.0	5	94	0	71	40	2	20	37	1.66
26582043--26582114	36	2.0	36	97	0	135	29	2	2	65	1.21
26582050--26582126	36	2.1	36	85	4	102	28	6	3	61	1.39
26585350--26585557	72	2.9	72	77	8	208	25	17	20	37	1.94
26589262--26589286	13	1.9	13	100	0	50	48	8	0	44	1.32
26594602--26594652	26	2.0	26	88	0	75	62	0	5	31	1.19
26597642--26597698	2	28.5	2	89	0	87	45	49	3	1	1.29
26614409--26614446	17	2.2	17	86	9	51	23	0	7	68	1.16
26619303--26619332	15	2.0	15	100	0	60	40	13	13	33	1.83
26622563--26622600	20	2.0	20	94	5	69	21	26	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26623387--26623518	43	3.1	43	84	4	160	22	18	37	21	1.94
26623819--26623968	60	2.5	61	82	7	191	24	18	21	36	1.95
26629209--26629238	7	4.3	7	91	0	51	60	26	0	13	1.34
26640574--26640620	20	2.3	21	89	7	71	63	12	0	23	1.28
26646212--26646240	2	14.5	2	100	0	58	48	0	0	51	1.00
26655576--26655655	41	2.0	41	90	5	126	18	27	16	37	1.92
26671625--26671670	20	2.3	20	88	0	65	30	2	23	43	1.66
26671634--26671671	20	1.9	20	94	0	67	31	0	28	39	1.57
26672890--26672914	13	1.9	13	100	0	50	44	0	8	48	1.32
26674432--26674471	21	1.9	21	85	10	55	2	30	2	65	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97