genome.fa.s9.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  94  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37302871--37302962	27	3.6	25	67	26	66	47	0	5	46	1.25
37302630--37302976	159	2.2	153	78	14	378	40	0	3	54	1.24
37302891--37302993	51	2.0	51	85	10	140	44	0	5	48	1.33
37303081--37303117	16	2.3	17	86	9	51	51	0	0	48	1.00
37303088--37303121	16	2.1	16	89	10	52	44	0	0	55	0.99
37303143--37303196	27	1.9	29	85	7	76	42	0	0	57	0.98
37315742--37315791	21	2.4	21	93	3	84	42	16	12	30	1.84
37330327--37330369	19	2.3	19	80	8	52	32	2	23	41	1.67
37349745--37349770	6	4.3	6	100	0	52	34	0	0	65	0.93
37352014--37352070	2	28.5	2	89	7	89	0	45	0	52	1.00
37359744--37360155	207	2.0	205	84	6	546	41	19	12	25	1.87
37363401--37363442	2	21.0	2	100	0	84	50	0	0	50	1.00
37366204--37366241	3	12.7	3	88	0	58	28	2	2	65	1.19
37366655--37366685	15	2.1	15	94	5	55	51	0	0	48	1.00
37385609--37385733	54	2.3	54	75	8	130	21	40	13	24	1.89
37385613--37385728	27	4.3	26	76	4	106	20	40	13	25	1.89
37385826--37385873	24	2.0	24	87	0	69	39	12	18	29	1.88
37431164--37431193	2	15.0	2	100	0	60	0	50	0	50	1.00
37432714--37432756	22	1.9	23	85	4	61	44	9	2	44	1.49
37432470--37432992	219	2.4	220	83	6	637	43	6	3	46	1.46
37432910--37432965	21	2.6	23	80	8	64	44	3	1	50	1.29
37436123--37436184	25	2.4	25	81	10	72	61	3	4	30	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37437301--37437478	92	2.0	90	85	4	241	32	10	16	40	1.83
37438022--37438047	13	2.0	13	100	0	52	61	7	7	23	1.49
37444716--37444802	45	1.9	45	90	0	138	34	20	13	31	1.92
37450380--37450436	20	2.8	21	75	2	62	49	0	0	50	1.00
37457997--37458034	20	2.0	20	89	5	60	50	18	2	28	1.61
37467751--37467803	25	2.1	25	100	0	106	20	22	15	41	1.89
37470508--37470532	2	12.5	2	100	0	50	48	0	52	0	1.00
37470682--37470708	2	13.5	2	100	0	54	48	0	51	0	1.00
37472395--37472455	20	3.0	21	66	9	54	40	8	21	29	1.82
37472374--37472455	40	2.0	40	100	0	164	39	9	21	29	1.86
37487896--37487927	6	5.3	6	96	0	55	18	46	0	34	1.49
37491829--37491872	2	22.0	2	90	0	70	52	2	0	45	1.13
37492387--37492416	2	15.0	2	100	0	60	0	50	0	50	1.00
37495391--37495564	87	2.0	87	100	0	348	20	32	12	34	1.90
37495896--37495929	2	17.0	2	100	0	68	50	0	0	50	1.00
37519331--37519367	2	18.5	2	100	0	74	51	0	0	48	1.00
37523010--37523072	32	2.0	32	100	0	126	31	28	7	31	1.86
37536760--37537946	611	1.9	611	99	0	2338	37	11	17	33	1.86
37539248--37539276	2	14.5	2	100	0	58	51	0	0	48	1.00
37539543--37539959	160	2.5	165	80	8	469	40	8	11	39	1.72
37547225--37547463	123	1.9	123	80	8	281	27	25	19	27	1.99
37552881--37552915	17	1.9	19	88	11	56	40	20	22	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37566119--37566188	30	2.3	30	100	0	140	24	25	22	27	2.00
37568457--37568512	19	3.3	17	81	18	64	50	3	0	46	1.19
37568497--37568550	25	2.2	24	83	3	72	62	1	1	33	1.16
37572351--37572394	17	2.6	16	82	10	52	77	4	2	15	1.04
37576440--37576475	18	1.9	19	88	5	56	52	2	0	44	1.15
37577621--37577663	15	2.8	16	82	13	54	6	37	0	55	1.27
37577622--37577669	15	3.1	15	82	14	53	4	37	2	56	1.30
37580257--37580505	129	1.9	129	93	0	426	21	17	32	28	1.96
37581504--37581561	24	2.4	24	85	0	80	51	0	10	37	1.36
37583718--37583772	25	2.2	25	77	6	58	65	5	1	27	1.25
37584251--37584307	29	2.0	29	89	0	87	47	8	26	17	1.77
37584554--37584664	35	3.2	35	74	2	107	23	17	16	43	1.87
37584532--37584664	70	1.9	70	82	3	169	24	16	15	43	1.86
37584903--37584928	13	2.0	13	100	0	52	69	7	0	23	1.14
37584943--37584986	23	2.0	22	82	13	54	59	2	0	38	1.10
37606378--37606433	19	2.9	20	76	17	64	30	0	0	69	0.89
37606378--37606433	18	3.0	18	81	5	67	30	0	0	69	0.89
37609842--37610020	94	1.9	95	89	4	281	29	14	21	35	1.93
37610455--37610479	6	4.2	6	100	0	50	48	0	52	0	1.00
37610677--37610708	3	10.3	3	93	6	55	65	0	34	0	0.93
37611668--37611693	3	8.7	3	100	0	52	65	0	0	34	0.93
37619231--37619307	20	3.9	20	77	13	79	37	2	6	53	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37620149--37620225	20	3.9	20	76	10	86	40	1	5	53	1.32
37620915--37620950	18	2.0	18	88	0	54	22	33	19	25	1.97
37628196--37628230	18	2.0	17	88	5	52	71	11	0	17	1.14
37629806--37629835	10	3.1	10	95	4	53	70	0	0	30	0.88
37629808--37629836	13	2.1	14	93	6	51	72	0	0	27	0.85
37630107--37630132	3	8.7	3	100	0	52	65	0	0	34	0.93
37629844--37630411	252	2.2	259	91	5	911	48	14	5	31	1.66
37678651--37678675	2	12.5	2	100	0	50	52	0	0	48	1.00
37687693--37687765	39	1.9	36	94	0	101	42	23	1	32	1.63
37689221--37689246	3	8.7	3	100	0	52	65	0	34	0	0.93
37703011--37703044	3	11.3	3	100	0	68	0	32	0	67	0.91
37712982--37713050	21	3.1	21	76	14	68	59	0	0	40	0.97
37712992--37713047	18	2.9	19	86	7	69	58	0	0	41	0.98
37715655--37715715	17	3.4	18	76	10	54	57	1	0	40	1.08
37715670--37715715	17	2.6	18	82	10	58	54	2	0	43	1.12
37731661--37731700	12	3.3	12	85	0	53	45	0	0	55	0.99
37735895--37735964	2	35.5	2	78	18	76	47	2	2	47	1.32
37739614--37739648	2	17.5	2	100	0	70	48	0	0	51	1.00
37740432--37740488	2	28.5	2	100	0	114	49	0	0	50	1.00
37743792--37744021	79	2.9	79	98	0	442	15	23	12	49	1.78
37751521--37751547	2	13.5	2	100	0	54	48	0	51	0	1.00
37759713--37759761	25	2.0	25	95	0	89	20	32	2	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37762199--37762249	24	2.1	24	85	3	66	70	1	0	27	0.98
37763307--37763495	79	2.4	80	80	5	206	35	8	9	46	1.67
37766421--37766616	106	1.8	107	83	5	263	28	17	19	34	1.95
37767378--37767465	37	2.4	37	88	5	126	28	6	21	43	1.78
37768244--37768397	80	1.9	79	98	1	299	37	7	9	45	1.63
37784442--37784474	14	2.4	14	90	10	50	27	9	3	60	1.42
37785920--37785963	20	2.2	20	88	8	63	52	0	0	47	1.00
37785947--37785987	21	2.0	21	95	0	73	58	0	0	41	0.98
37797956--37797992	3	12.3	3	100	0	74	67	0	0	32	0.91
37798291--37798344	15	3.7	15	76	14	60	1	62	1	33	1.16
37820691--37820720	2	15.0	2	92	0	51	46	0	3	50	1.18
37820954--37820992	9	4.3	9	87	9	53	5	20	0	74	1.01
37823770--37823810	21	2.0	21	85	9	57	24	26	29	19	1.98
37825244--37825295	3	16.0	3	81	15	59	30	0	38	30	1.58
37825244--37825295	7	7.9	7	87	6	65	30	0	38	30	1.58
37825244--37825292	17	2.9	16	80	19	64	30	0	38	30	1.58
37826648--37826688	17	2.4	16	88	8	55	39	2	0	58	1.11
37826662--37826697	17	2.1	17	89	5	54	44	0	0	55	0.99
37842435--37842483	2	24.5	2	100	0	98	51	0	0	48	1.00
37850058--37850096	12	3.3	12	89	3	53	28	43	0	28	1.55
37850247--37850273	3	9.0	3	100	0	54	0	0	33	66	0.92
37855058--37855108	20	2.5	21	83	6	68	66	9	0	23	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37857685--37857730	23	1.9	25	86	8	69	65	4	0	30	1.12
37857679--37857741	23	2.8	21	72	15	54	66	3	0	30	1.07
37857679--37857741	24	2.7	22	80	9	72	66	3	0	30	1.07
37858532--37858598	25	2.8	23	78	12	73	49	1	0	49	1.10
37859103--37859145	22	1.9	23	90	4	70	41	0	0	58	0.98
37864986--37865029	22	2.0	23	90	4	72	38	0	0	61	0.96
37868231--37868343	56	2.0	56	100	0	226	35	28	10	25	1.89
37894019--37894160	70	2.0	70	98	0	275	33	7	25	33	1.84
37894250--37894327	38	2.0	41	82	12	101	39	7	1	51	1.39
37898799--37898833	16	2.2	16	100	0	70	37	14	28	20	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97