genome.fa.s9.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  40  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16432236--16432281	9	4.9	10	87	10	62	73	4	0	21	1.00
16432236--16432284	19	2.6	19	90	9	75	75	4	0	20	0.96
16433092--16433225	68	2.0	68	92	2	225	19	25	13	41	1.88
16434148--16434177	15	2.0	15	93	0	51	50	13	10	26	1.73
16435067--16435108	17	2.6	16	81	7	57	61	0	0	38	0.96
16435870--16435928	30	2.0	30	86	6	84	67	5	5	22	1.30
16440751--16440775	2	12.5	2	100	0	50	0	48	0	52	1.00
16445773--16445910	67	2.1	67	98	1	269	18	29	13	38	1.89
16452221--16452248	13	2.2	13	100	0	56	42	7	28	21	1.79
16453833--16453876	22	2.0	23	82	13	56	27	6	18	47	1.73
16457233--16457294	19	3.3	19	66	8	54	20	17	40	20	1.92
16463325--16463374	25	2.0	25	84	7	66	40	20	0	40	1.52
16463344--16463384	20	2.0	20	90	0	64	46	14	0	39	1.45
16480891--16480964	33	2.3	33	85	2	96	32	14	20	32	1.93
16481864--16481930	35	1.9	35	81	6	82	34	28	5	31	1.81
16484759--16484795	18	2.1	18	94	0	65	45	13	0	40	1.43
16489708--16489761	23	2.3	23	100	0	108	16	25	3	53	1.59
16495186--16495253	35	2.0	34	82	8	84	35	27	8	27	1.87
16497425--16497463	3	13.0	3	94	0	69	33	0	2	64	1.08
16502492--16502535	15	2.9	15	86	0	61	40	0	22	36	1.54
16505315--16505352	20	1.9	20	88	0	58	39	2	15	42	1.61
16509350--16509381	15	2.2	15	94	5	57	21	28	0	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16515747--16515774	3	9.3	3	100	0	56	32	32	0	35	1.58
16517909--16517954	14	3.4	14	79	5	51	43	0	0	56	0.99
16517931--16517979	20	2.4	21	86	10	66	36	0	0	63	0.95
16517928--16518013	37	2.3	37	82	6	102	37	0	1	61	1.04
16517928--16518023	38	2.6	36	80	8	95	36	1	1	61	1.10
16518095--16518218	53	2.4	52	89	6	189	44	1	0	53	1.16
16529485--16529535	21	2.4	21	80	6	50	31	21	23	23	1.98
16533350--16533387	19	2.0	19	100	0	76	26	0	31	42	1.56
16533436--16533494	28	2.1	28	84	6	75	35	18	22	23	1.96
16547785--16547870	2	43.0	2	85	0	82	51	3	2	41	1.32
16547778--16547880	52	2.0	51	100	0	197	52	5	3	36	1.44
16556029--16556192	72	2.3	70	81	10	195	37	12	12	36	1.82
16565490--16565567	38	2.1	38	92	0	129	47	12	10	29	1.75
16566488--16566522	13	2.7	13	91	8	54	77	5	0	17	0.96
16569231--16569260	11	2.7	11	94	0	51	40	23	0	36	1.55
16572716--16572757	18	2.3	18	87	0	57	38	0	9	52	1.34
16572795--16572840	22	2.1	22	84	8	58	36	6	4	52	1.47
16574217--16574242	13	2.0	13	100	0	52	46	7	0	46	1.31
16578629--16578666	19	2.0	19	94	0	67	42	28	0	28	1.56
16583253--16583296	20	2.2	20	95	0	79	27	4	20	47	1.69
16583343--16583395	28	1.9	27	88	3	79	30	18	22	28	1.98
16583343--16583401	28	2.1	28	84	6	75	30	20	23	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16593505--16593542	18	2.1	18	85	9	51	44	2	10	42	1.52
16593957--16593987	16	1.9	16	93	0	53	32	3	3	61	1.28
16594297--16594332	18	1.9	18	88	5	54	47	8	0	44	1.33
16594320--16594359	2	20.5	2	85	14	57	47	0	2	50	1.14
16594320--16594359	13	3.1	13	92	7	64	47	0	2	50	1.14
16595246--16595291	13	3.7	12	85	5	56	13	0	10	76	1.03
16595258--16595291	12	2.8	12	90	4	50	14	0	5	79	0.91
16600410--16600460	19	2.7	19	84	6	59	35	3	3	56	1.36
16602297--16602342	4	11.5	4	100	0	92	50	23	0	26	1.50
16606685--16606735	20	2.7	19	84	6	59	37	1	1	58	1.20
16611035--16611074	20	2.0	20	85	5	53	35	2	12	50	1.54
16627152--16627179	2	14.0	2	100	0	56	50	0	0	50	1.00
16627216--16627305	42	2.1	42	87	4	128	24	34	16	24	1.95
16629504--16629594	17	5.3	16	70	18	67	71	6	7	14	1.29
16629496--16629597	52	1.9	53	80	9	118	71	5	8	13	1.29
16646745--16646871	18	7.4	17	70	17	84	74	4	3	17	1.15
16646756--16646871	17	6.7	18	73	13	84	74	5	4	16	1.16
16646802--16646872	17	4.1	16	83	16	88	77	7	1	14	1.04
16646743--16646872	9	15.2	8	70	14	75	73	4	3	17	1.15
16646745--16646872	16	7.5	16	73	16	96	74	4	3	17	1.15
16646802--16646873	9	8.0	9	79	14	78	76	8	1	13	1.08
16650279--16650315	19	1.9	19	94	0	65	40	29	2	27	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16658440--16658514	28	2.7	28	97	0	141	32	17	25	25	1.97
16659639--16659663	13	1.9	13	100	0	50	44	0	8	48	1.32
16660989--16661033	21	2.0	23	83	8	58	57	8	0	33	1.30
16673413--16673437	13	1.9	13	100	0	50	44	0	8	48	1.32
16679083--16679118	18	1.9	19	88	5	56	19	5	11	63	1.46
16683276--16683318	20	2.2	20	86	0	59	44	13	23	18	1.86
16689099--16689137	20	2.0	20	89	0	60	38	2	20	38	1.66
16691670--16691707	19	2.0	19	85	10	51	5	23	0	71	1.07
16693680--16693704	13	1.9	13	100	0	50	48	8	0	44	1.32
16694921--16694974	28	2.0	27	85	3	72	22	25	24	27	2.00
16694921--16694974	27	2.0	27	82	7	65	22	25	24	27	2.00
16695483--16695569	16	5.5	15	69	17	52	29	0	1	68	0.96
16695514--16695585	32	2.3	31	86	11	94	25	0	1	73	0.91
16695515--16695585	21	3.4	21	72	20	76	23	0	1	74	0.90
16696017--16696062	23	2.0	23	91	0	74	10	19	15	54	1.70
16701089--16701171	15	5.7	15	68	22	52	51	4	28	14	1.62
16701892--16701949	21	2.8	20	78	19	66	37	1	8	51	1.43
16703698--16703795	45	2.2	45	79	3	108	31	21	13	33	1.92
16705113--16705166	17	2.8	19	71	17	58	50	12	14	22	1.77
16712619--16712662	17	2.6	17	88	0	70	75	0	0	25	0.81
16712621--16712672	27	1.9	27	84	7	70	75	0	0	25	0.81
16725811--16727600	630	2.8	636	80	9	2131	26	11	21	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16731479--16731754	148	1.9	147	100	0	543	40	7	11	39	1.71
16734092--16734165	39	1.9	39	86	2	105	32	18	21	27	1.97
16734563--16734665	38	2.6	39	86	6	138	22	40	17	19	1.91
16734563--16734661	19	5.1	19	65	9	65	21	40	18	20	1.92
16735539--16735577	19	2.1	19	95	0	69	38	12	25	23	1.90
16746800--16746840	21	2.1	19	86	9	55	26	0	12	60	1.31
16749846--16749978	42	3.1	41	87	7	187	27	34	14	23	1.93
16768836--16768869	15	2.3	15	89	0	50	76	2	0	20	0.92
16769262--16769325	4	16.8	4	75	15	64	76	1	1	20	0.95
16769257--16769341	31	2.7	32	85	7	104	77	1	2	18	0.94
16781717--16782402	59	11.7	59	79	4	627	33	11	18	36	1.87
16781714--16782415	119	6.0	118	81	5	699	33	11	18	36	1.86
16781838--16782402	173	3.2	175	83	4	653	32	11	19	36	1.88
16782358--16782462	50	2.1	52	82	10	128	31	13	20	35	1.91
16782603--16782683	6	13.3	6	76	14	62	80	0	1	18	0.78
16782608--16782669	4	15.8	4	75	21	60	79	0	1	19	0.82
16782603--16782685	24	3.3	23	79	20	80	80	0	1	18	0.77
16782606--16782685	40	1.9	40	87	12	117	81	0	1	17	0.76
16785666--16785709	20	2.2	20	87	0	61	22	2	6	68	1.25
16785680--16785719	21	2.0	20	85	5	53	20	2	2	75	1.04
16786803--16786838	14	2.6	14	81	0	54	30	2	8	58	1.42
16797206--16797273	31	2.2	31	89	2	102	52	5	8	32	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16797837--16797910	29	2.5	31	84	4	98	39	17	6	36	1.76
16810760--16810838	40	2.0	40	94	0	140	17	22	25	34	1.96
16815683--16815761	40	2.0	40	87	5	115	21	20	22	35	1.96
16815758--16815802	19	2.3	20	88	3	65	15	31	24	28	1.96
16815952--16815996	19	2.3	20	80	3	56	17	31	22	28	1.97
16815681--16816070	194	2.0	194	97	0	735	22	21	19	36	1.95
16820548--16820585	20	1.9	19	94	5	67	23	15	23	36	1.94
16820788--16820860	22	3.3	22	79	7	69	56	10	13	19	1.67
16821348--16821437	29	3.1	29	87	6	137	33	17	27	21	1.96
16826651--16826679	15	1.9	15	100	0	58	13	6	27	51	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97