genome.fa.s9.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  51  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20558659--20558684	2	13.0	2	100	0	52	50	0	0	50	1.00
20563524--20563613	42	2.1	42	93	0	153	23	18	33	24	1.97
20563660--20563753	2	46.0	2	88	4	127	47	2	3	45	1.30
20576405--20576531	68	1.9	68	86	0	182	33	19	10	36	1.86
20589375--20589412	20	1.9	20	94	0	67	44	18	5	31	1.72
20591195--20591233	20	2.0	20	85	10	53	25	2	2	69	1.14
20594721--20594752	9	3.6	9	91	0	55	40	21	9	28	1.84
20594711--20594759	18	2.5	21	77	19	68	42	18	10	28	1.83
20594721--20594759	18	2.2	18	95	0	69	41	17	10	30	1.83
20594721--20594759	9	4.3	9	86	0	51	41	17	10	30	1.83
20595018--20595063	18	2.6	18	85	0	65	47	17	10	23	1.79
20596965--20597187	61	3.7	61	89	0	320	24	32	17	26	1.97
20599157--20599227	37	1.9	37	88	5	108	23	38	9	28	1.87
20604204--20604352	74	2.0	74	94	0	262	50	11	22	15	1.76
20620023--20620204	63	2.9	63	87	3	276	30	13	31	24	1.94
20626823--20626869	22	2.1	23	84	11	62	27	6	17	48	1.71
20642634--20642673	21	1.9	21	84	0	53	60	7	15	17	1.57
20643428--20643466	2	19.5	2	94	0	69	48	0	2	48	1.15
20643620--20643797	36	4.9	35	82	4	149	25	43	10	20	1.83
20643584--20643760	73	2.4	71	85	8	219	27	40	10	22	1.87
20643701--20643790	36	2.5	36	96	0	162	23	46	10	20	1.80
20643663--20643797	36	3.7	36	85	2	153	25	44	11	19	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20645742--20645781	14	2.9	14	82	10	55	0	25	0	75	0.81
20645735--20645792	25	2.3	25	82	5	64	3	25	0	70	1.03
20652369--20652424	17	3.3	17	82	0	58	60	10	3	25	1.45
20655331--20655368	19	2.0	19	89	0	58	42	26	0	31	1.56
20656673--20656736	26	2.4	27	72	23	64	68	7	0	23	1.15
20663206--20663452	125	2.0	127	95	1	453	31	14	13	40	1.86
20676736--20676924	91	2.0	93	88	4	283	38	15	16	30	1.89
20681477--20681514	18	2.1	18	100	0	76	28	39	15	15	1.89
20683026--20683069	21	2.1	21	87	4	63	2	29	0	68	1.02
20685707--20685781	13	5.5	13	68	22	55	25	9	13	52	1.70
20685711--20685786	28	2.7	28	97	0	143	26	10	13	50	1.73
20685720--20685768	15	3.4	15	68	21	50	22	10	12	55	1.66
20685796--20685841	2	23.0	2	100	0	92	50	0	0	50	1.00
20698673--20698700	14	2.0	14	100	0	56	64	0	7	28	1.20
20698729--20698789	31	2.0	31	83	0	77	54	14	6	24	1.64
20709096--20709151	28	2.0	28	89	6	87	23	21	25	30	1.99
20709199--20709244	20	2.3	20	96	0	83	45	21	4	28	1.71
20717303--20717338	17	2.2	16	90	5	54	47	0	8	44	1.33
20722025--20722236	109	1.9	110	91	0	345	25	8	14	51	1.70
20729269--20729313	2	22.5	2	95	0	81	48	0	2	48	1.13
20731710--20731747	19	2.0	19	94	0	67	28	0	28	42	1.56
20738290--20738335	15	3.1	14	85	14	58	26	0	15	58	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20738370--20738402	14	2.3	15	94	5	59	39	0	21	39	1.53
20738371--20738410	19	2.1	19	90	0	62	35	2	25	37	1.69
20738370--20738402	5	6.8	5	93	6	59	39	0	21	39	1.53
20757963--20758008	20	2.3	20	88	7	67	32	4	17	45	1.68
20758053--20758105	28	1.9	27	88	3	79	30	18	22	28	1.98
20758053--20758111	28	2.1	28	84	6	75	30	20	23	25	1.98
20769954--20769994	9	4.7	9	90	6	66	51	2	0	46	1.14
20769954--20769994	17	2.4	17	91	4	64	51	2	0	46	1.14
20770167--20770208	20	2.1	20	95	0	75	42	23	4	28	1.74
20770835--20770863	5	5.8	5	100	0	58	41	0	58	0	0.98
20778995--20779040	23	2.0	24	83	12	60	36	13	8	41	1.75
20780767--20780797	6	5.2	6	92	0	53	35	0	3	61	1.12
20784202--20784241	9	4.4	9	87	0	53	40	17	10	32	1.83
20784198--20784241	18	2.4	18	84	0	61	38	18	11	31	1.86
20784237--20784273	20	2.0	20	89	10	60	51	0	0	48	1.00
20788757--20788974	107	2.1	106	84	1	285	35	6	13	43	1.71
20788726--20788988	35	7.5	35	81	4	246	36	6	13	43	1.70
20788766--20788997	71	3.3	69	80	6	259	36	6	14	42	1.72
20791251--20791360	51	2.1	53	93	3	188	31	13	20	34	1.91
20792834--20792916	32	2.6	32	86	0	121	26	7	20	45	1.77
20792846--20792904	18	3.5	18	68	17	54	28	6	18	45	1.75
20801960--20802015	22	2.6	21	78	13	60	46	10	1	41	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20802523--20802557	17	2.0	18	88	5	54	54	0	0	45	0.99
20803066--20803119	22	2.4	22	81	9	65	5	20	0	74	1.02
20806723--20806783	28	2.1	29	81	3	70	47	18	6	27	1.73
20809089--20809129	20	2.0	20	95	0	73	41	0	14	43	1.45
20809098--20809147	25	2.0	25	84	7	66	44	0	20	36	1.52
20813205--20813242	19	2.0	19	100	0	76	42	31	0	26	1.56
20814929--20815516	318	1.9	314	93	2	998	32	11	10	44	1.75
20816391--20816415	2	12.5	2	100	0	50	48	0	0	52	1.00
20823221--20823440	110	2.0	110	92	0	368	24	6	16	52	1.67
20826969--20826998	14	2.1	14	93	0	51	16	0	10	73	1.09
20830083--20830113	14	2.2	14	94	0	53	48	6	19	25	1.72
20839465--20839507	22	2.0	22	95	0	77	27	20	25	25	1.99
20845067--20845097	2	16.0	2	93	6	55	51	0	0	48	1.00
20851608--20851658	19	2.7	19	90	3	86	41	0	0	58	0.98
20851608--20851666	19	3.2	18	77	17	59	44	1	0	54	1.10
20865938--20865973	2	18.0	2	94	0	63	50	2	0	47	1.15
20866380--20866439	2	30.0	2	93	0	102	48	0	1	50	1.11
20868652--20868677	13	2.0	13	100	0	52	46	7	0	46	1.31
20869900--20869937	19	2.0	19	100	0	76	42	31	0	26	1.56
20871957--20871982	10	2.6	10	100	0	52	11	0	0	88	0.52
20872519--20872551	16	2.0	17	88	5	50	39	0	9	51	1.34
20877134--20877167	11	3.0	11	91	4	50	73	0	20	5	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20880216--20880298	35	2.4	35	81	4	105	32	20	13	33	1.91
20886111--20886143	17	1.9	17	88	11	50	42	15	3	39	1.62
20886299--20886456	59	2.7	58	82	3	192	43	13	8	34	1.75
20886299--20886456	29	5.4	28	80	8	163	43	13	8	34	1.75
20886407--20886468	29	2.1	29	82	5	72	37	19	12	30	1.89
20893894--20893956	33	1.9	32	83	3	81	53	1	3	41	1.26
20894947--20895011	30	2.2	30	88	2	96	27	33	1	36	1.67
20895356--20895397	21	2.0	21	90	4	68	54	2	0	42	1.13
20901086--20901153	33	2.1	33	97	0	127	33	8	10	47	1.69
20912138--20912183	23	2.0	23	95	0	83	45	30	6	17	1.73
20920072--20920107	2	18.0	2	100	0	72	0	50	0	50	1.00
20920121--20920162	5	8.0	5	86	7	57	78	4	0	16	0.91
20920122--20920170	10	4.7	10	82	7	53	77	6	0	16	0.96
20920121--20920170	16	3.2	16	82	5	66	76	6	0	18	0.99
20924859--20924937	39	2.0	39	97	0	149	49	16	2	31	1.59
20929137--20929180	20	2.2	20	87	0	61	43	20	6	29	1.78
20962654--20962737	32	2.7	32	87	7	120	51	1	25	22	1.56
20964560--20964712	43	3.6	43	90	1	227	22	19	36	20	1.95
20964711--20964773	20	3.2	19	88	2	90	25	4	41	28	1.75
20965585--20965618	14	2.6	13	90	9	52	23	0	14	61	1.33
20967555--20967624	21	3.3	20	69	15	61	50	5	1	42	1.35
20979228--20979271	18	2.4	18	88	0	61	38	6	11	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20985872--20985938	29	2.2	30	79	10	75	70	1	8	19	1.22
20988847--20988982	67	2.0	67	89	0	209	27	13	25	34	1.93
20988870--20988991	35	3.6	35	73	7	117	30	13	25	31	1.93
20988935--20989004	35	2.0	34	84	13	90	30	10	30	30	1.90
20991054--20991243	76	2.5	77	87	5	278	40	6	11	41	1.68
20996529--20996595	15	4.5	15	82	14	77	67	1	31	0	1.00
20996527--20996598	30	2.4	31	90	6	121	68	1	30	0	0.99
21004578--21004624	21	2.2	21	96	0	85	25	19	17	38	1.92
21006860--21006884	2	12.5	2	100	0	50	52	48	0	0	1.00
21007645--21007802	54	2.9	54	93	0	264	25	37	15	21	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97