genome.fa.s9.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  88  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34611231--34611529	100	3.0	100	92	1	501	34	12	10	43	1.76
34611231--34611529	99	3.0	99	93	1	499	34	12	10	43	1.76
34623133--34623165	13	2.5	13	86	13	50	75	0	18	6	1.00
34627280--34627309	3	10.0	3	92	0	51	0	3	33	63	1.11
34630473--34630541	33	2.1	33	97	0	129	55	18	13	13	1.69
34630924--34631037	2	58.5	2	79	5	99	43	4	3	47	1.40
34635442--34635534	28	3.2	28	72	21	102	61	0	4	33	1.16
34635438--34635556	58	2.0	59	93	6	197	59	0	3	36	1.14
34635438--34635536	30	3.4	30	71	19	100	62	0	4	32	1.14
34635472--34635556	30	2.8	30	70	8	82	58	0	2	37	1.11
34647823--34647880	21	3.0	21	76	19	54	43	5	0	51	1.24
34652249--34652292	18	2.4	19	84	3	63	36	13	6	43	1.71
34657505--34657558	26	2.0	27	85	3	74	31	1	0	66	1.02
34659967--34660780	64	12.7	64	81	3	904	36	9	14	39	1.79
34659967--34660780	190	4.2	191	83	3	902	36	9	14	39	1.79
34659967--34660758	254	3.1	253	84	2	1005	36	9	14	39	1.79
34661469--34661506	17	2.1	19	90	9	62	42	2	0	55	1.14
34667420--34667446	2	13.5	2	100	0	54	48	0	0	51	1.00
34671730--34671814	27	3.2	26	75	5	80	38	7	11	42	1.69
34672720--34672798	36	2.2	35	86	2	104	26	36	17	18	1.94
34674190--34674263	2	37.0	2	93	0	58	37	1	10	48	1.47
34685128--34685199	23	3.4	21	74	24	62	52	1	1	44	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34685157--34685204	20	2.4	20	82	10	62	56	0	0	43	0.99
34685223--34685284	25	2.4	26	89	10	101	56	0	0	43	0.99
34685399--34685502	41	2.5	42	96	3	201	50	0	3	46	1.20
34685399--34685941	41	13.2	41	67	17	181	53	1	2	41	1.24
34685249--34685741	225	2.2	223	79	8	493	51	1	2	44	1.25
34685713--34685776	26	2.4	27	84	10	87	53	0	1	45	1.10
34685779--34685825	14	3.6	13	78	16	53	68	2	0	29	1.02
34685768--34685826	26	2.3	26	80	19	70	64	1	0	33	1.04
34685820--34685875	28	2.0	29	82	3	69	55	3	0	41	1.17
34685653--34685991	156	2.2	153	87	5	466	57	2	0	39	1.16
34685854--34685914	15	4.3	15	76	21	60	59	0	1	39	1.08
34685842--34685949	42	2.6	42	83	5	130	55	0	1	41	1.17
34687075--34687160	35	2.5	35	82	0	100	23	12	12	51	1.74
34689575--34689628	15	3.3	17	77	15	60	75	0	1	22	0.89
34689567--34689631	17	3.9	16	72	27	55	75	0	3	21	0.94
34690425--34690453	9	3.2	9	100	0	58	55	0	0	44	0.99
34702873--34702987	39	2.9	39	85	2	142	8	18	25	47	1.76
34705342--34705400	28	2.1	28	84	6	75	33	1	1	62	1.15
34705393--34705444	27	1.9	27	84	0	68	42	0	3	53	1.19
34706158--34706192	3	11.7	3	100	0	70	0	34	0	65	0.93
34711080--34711134	18	2.8	19	83	10	67	38	0	41	20	1.52
34715866--34715898	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34716634--34716710	29	2.7	29	100	0	154	40	12	6	40	1.70
34716637--34716731	29	3.1	32	87	4	124	41	14	7	36	1.74
34716632--34716756	58	2.2	56	79	13	130	38	14	9	37	1.79
34716790--34716884	45	2.1	45	80	3	102	31	17	13	36	1.89
34716797--34717007	114	1.9	114	83	4	282	30	19	15	34	1.93
34716824--34716953	69	1.9	69	84	9	176	29	18	15	36	1.91
34716892--34717056	45	3.7	45	87	0	231	27	20	17	35	1.95
34717030--34717075	23	2.0	24	91	4	76	23	17	17	41	1.90
34716985--34717183	68	2.9	69	81	3	222	26	15	18	39	1.90
34717034--34717150	24	5.0	24	69	8	80	27	14	18	39	1.90
34720005--34720034	15	2.0	15	93	0	51	40	6	10	43	1.64
34724691--34724723	7	4.7	7	96	0	57	24	27	30	18	1.98
34729324--34729383	18	3.3	18	76	6	68	31	5	36	26	1.78
34729332--34729394	18	3.5	18	80	4	74	30	6	34	28	1.82
34742327--34742538	108	2.0	108	94	0	370	30	15	16	38	1.89
34759132--34759238	54	2.0	53	98	0	196	42	7	15	33	1.76
34764037--34764065	10	2.9	10	100	0	58	58	0	0	41	0.98
34764037--34764065	15	1.9	15	100	0	58	58	0	0	41	0.98
34764038--34764073	15	2.3	15	90	4	54	61	2	0	36	1.11
34764070--34764131	14	4.5	15	79	15	64	85	0	0	14	0.60
34764086--34764128	7	5.9	7	94	5	68	88	0	0	11	0.52
34764083--34764129	8	6.1	8	95	5	80	87	0	0	12	0.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34765047--34765080	7	4.6	7	86	13	50	82	0	0	17	0.67
34765037--34765086	9	5.4	9	78	21	59	84	0	0	16	0.63
34765038--34765085	16	2.9	16	87	3	69	83	0	0	16	0.65
34765051--34765111	20	2.8	22	80	19	74	73	0	4	21	1.01
34769141--34769194	18	3.0	18	94	0	99	27	9	27	35	1.87
34781664--34781699	18	2.0	18	94	0	63	44	8	38	8	1.65
34781691--34781813	49	2.7	47	83	8	164	35	20	26	17	1.95
34781827--34781918	28	3.2	28	77	6	78	27	30	17	25	1.97
34789645--34789843	108	1.9	104	87	5	292	43	16	12	27	1.83
34791061--34791108	24	2.0	24	88	8	71	50	12	12	25	1.75
34794255--34794318	30	2.2	29	82	2	74	28	4	6	60	1.41
34794424--34794505	33	2.5	33	100	0	164	40	18	4	36	1.72
34798698--34798777	3	26.0	3	76	16	58	27	2	0	70	1.01
34798707--34798788	29	2.9	28	80	14	98	23	2	0	74	0.94
34798698--34798792	32	3.0	31	79	10	102	25	2	0	72	0.95
34798698--34798782	24	3.5	23	76	19	82	25	2	0	71	0.98
34798698--34798792	8	11.6	8	73	20	63	25	2	0	72	0.95
34798698--34798792	50	1.9	49	83	10	122	25	2	0	72	0.95
34799225--34799263	14	2.7	15	84	15	64	5	41	0	53	1.23
34799229--34799262	13	2.7	12	86	13	50	5	44	0	50	1.26
34811878--34811917	21	2.0	20	85	5	53	30	15	2	52	1.55
34820702--34820728	1	27.0	1	100	0	54	0	100	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34824616--34824640	2	12.5	2	100	0	50	52	48	0	0	1.00
34833853--34833970	59	2.0	59	100	0	236	33	8	15	42	1.77
34862375--34862450	40	1.9	40	88	0	116	27	10	18	43	1.83
34894449--34894496	25	1.9	25	84	16	64	62	0	0	37	0.95
34918702--34918761	31	1.9	31	96	0	111	31	3	8	56	1.45
34919345--34919555	108	1.9	109	88	0	316	36	15	4	43	1.67
34931055--34931085	2	15.5	2	93	0	53	48	0	0	51	1.00
34931563--34931604	22	1.9	22	85	0	57	59	7	33	0	1.25
34940001--34940042	10	4.1	10	85	14	59	47	0	0	52	1.00
34939991--34940045	22	2.5	22	83	13	78	45	0	0	54	0.99
34940003--34940036	11	3.1	11	88	12	52	44	0	0	55	0.99
34941380--34941422	2	22.5	2	90	9	72	51	0	0	48	1.00
34947580--34947605	2	13.0	2	100	0	52	50	0	50	0	1.00
34952442--34952528	43	2.0	43	95	0	156	29	14	12	42	1.83
34962407--34962452	2	23.0	2	100	0	92	50	0	0	50	1.00
34970998--34971044	17	2.6	19	83	10	62	34	2	19	44	1.62
34980657--34980731	3	25.0	3	88	0	105	2	36	1	60	1.20
34983624--34983666	18	2.4	18	96	0	77	27	11	18	41	1.85
34984047--34984113	28	2.3	28	79	5	71	37	2	4	55	1.36
34992515--34992544	6	5.0	6	100	0	60	50	33	16	0	1.46
35001111--35001135	12	2.1	12	100	0	50	44	0	8	48	1.32
35024884--35024986	21	4.8	21	83	5	109	23	12	26	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35024996--35025066	23	3.1	23	83	2	81	38	26	9	25	1.87
35025075--35025136	22	2.8	22	85	0	79	41	19	14	24	1.88
35025075--35025153	22	3.6	22	82	0	77	41	20	13	24	1.88
35029168--35029204	19	2.0	19	89	5	58	27	5	27	40	1.78
35033015--35033064	27	1.9	25	92	8	82	44	0	0	56	0.99
35037381--35037424	2	22.0	2	100	0	88	50	0	0	50	1.00
35040139--35040279	57	2.5	57	75	4	142	47	23	21	7	1.75
35045082--35045168	39	2.3	39	81	2	95	41	11	26	20	1.86
35054544--35054590	2	23.5	2	95	0	85	46	2	0	51	1.13
35063519--35063564	21	2.2	21	84	7	58	36	13	23	26	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97