genome.fa.s9.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  57  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22763883--22763992	50	2.2	49	82	7	125	37	16	11	34	1.85
22764588--22764770	72	2.5	71	81	5	215	22	19	16	41	1.90
22766831--22766975	73	2.0	73	87	0	209	38	14	18	28	1.90
22766837--22767026	73	2.6	73	81	1	193	38	14	19	27	1.91
22767416--22767553	35	4.0	35	75	5	138	26	10	28	34	1.90
22767411--22767546	67	2.0	67	92	0	227	23	11	27	37	1.89
22769879--22769910	16	2.0	16	100	0	64	25	18	6	50	1.70
22773089--22773199	43	2.6	42	84	4	134	24	19	35	20	1.96
22773316--22773368	24	2.2	25	93	3	90	28	9	30	32	1.88
22775680--22775738	2	29.5	2	89	0	91	49	3	1	45	1.28
22775766--22775999	43	5.4	43	90	2	319	18	35	20	25	1.96
22810849--22810894	19	2.4	20	82	10	60	54	0	2	43	1.12
22819319--22819364	20	2.3	20	88	7	67	32	4	17	45	1.68
22819409--22819461	28	1.9	27	88	3	79	30	18	22	28	1.98
22819409--22819467	28	2.1	28	84	6	75	30	20	23	25	1.98
22827006--22827039	13	2.6	13	90	0	50	52	0	0	47	1.00
22828558--22828700	28	5.0	28	80	13	164	37	10	9	41	1.73
22828546--22828700	59	2.7	58	83	7	197	38	9	10	41	1.72
22828540--22828694	29	5.3	28	77	11	152	40	9	10	40	1.72
22831110--22831157	19	2.5	19	89	0	78	10	10	39	39	1.74
22831665--22831789	42	3.0	42	86	0	169	21	34	20	24	1.97
22834401--22834670	73	3.7	73	83	2	319	23	20	15	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22837732--22838005	29	9.8	28	78	10	265	38	13	9	39	1.76
22837732--22838012	57	5.0	57	80	7	290	38	13	9	39	1.77
22837824--22837972	51	2.8	51	85	10	167	38	14	9	37	1.78
22837846--22837999	80	1.9	79	92	3	256	37	13	9	39	1.78
22841750--22841910	86	1.9	86	88	5	245	23	19	36	20	1.95
22841759--22841910	43	3.5	42	87	5	207	23	19	36	20	1.95
22841912--22841972	20	3.1	20	90	2	97	24	3	42	29	1.70
22843053--22843102	26	1.9	26	87	0	73	32	4	20	44	1.70
22845318--22845366	17	2.9	17	81	3	55	2	32	0	65	1.04
22846674--22846712	11	3.5	11	92	0	60	48	17	2	30	1.61
22846706--22846763	23	2.6	22	83	5	71	46	20	3	29	1.67
22846706--22846772	22	3.0	22	82	4	80	41	20	5	31	1.77
22857199--22857223	13	1.9	13	100	0	50	48	8	0	44	1.32
22857251--22857276	10	2.6	10	100	0	52	34	30	0	34	1.58
22858654--22858691	19	2.0	19	94	0	67	42	28	0	28	1.56
22861214--22861259	19	2.4	20	82	10	60	54	0	2	43	1.12
22861661--22861698	20	1.9	20	100	0	76	28	5	21	44	1.73
22864783--22864854	2	36.0	2	100	0	144	50	0	0	50	1.00
22865250--22865304	25	2.2	25	90	0	83	29	16	30	23	1.96
22872949--22872985	18	2.1	18	94	0	65	64	0	35	0	0.94
22876466--22876490	2	12.5	2	100	0	50	48	0	0	52	1.00
22880611--22880656	15	3.1	14	87	6	65	28	4	13	54	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22892995--22893028	13	2.4	15	85	14	54	47	0	0	52	1.00
22892996--22893028	7	4.7	7	88	11	50	45	0	0	54	0.99
22894292--22894335	14	2.9	15	83	10	54	2	22	2	72	1.07
22894289--22894337	20	2.5	19	86	6	62	2	20	2	75	1.00
22895601--22895693	33	2.6	35	83	13	118	20	17	37	24	1.93
22897355--22897413	29	2.0	29	83	6	75	22	15	0	62	1.32
22897942--22898075	56	2.4	55	79	6	128	32	14	20	32	1.93
22898093--22898185	24	3.5	25	71	17	71	26	16	21	35	1.94
22898090--22898204	54	2.1	54	80	0	131	28	16	19	35	1.93
22910731--22910787	3	19.0	3	77	0	51	5	28	1	64	1.25
22910774--22910849	30	2.5	30	89	0	107	13	34	2	50	1.55
22910768--22910849	15	5.5	15	71	11	60	12	34	2	51	1.52
22912575--22912607	17	1.9	17	93	0	57	12	36	18	33	1.88
22916870--22916983	61	1.9	60	94	1	201	29	16	14	39	1.88
22936355--22936473	43	2.8	43	86	0	148	21	36	20	21	1.95
22947675--22947720	20	2.3	20	96	0	83	28	4	21	45	1.71
22948949--22948983	17	1.9	19	88	11	56	37	0	14	48	1.44
22959300--22959328	14	2.1	14	93	6	51	44	0	0	55	0.99
22964535--22964624	34	2.6	35	83	3	128	35	27	10	26	1.88
22970587--22970716	34	3.7	34	80	7	136	33	15	16	35	1.90
22976358--22976452	34	2.8	34	72	15	88	38	13	16	30	1.88
22976429--22976471	23	1.9	23	90	4	70	44	9	11	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22981643--22981682	19	2.0	20	85	4	55	42	12	12	32	1.80
22983051--22983083	17	2.0	17	88	5	50	45	6	18	30	1.73
22984793--22984817	13	1.9	13	100	0	50	44	0	8	48	1.32
22990201--22990651	228	2.0	228	88	1	663	31	14	14	38	1.87
22993367--22993446	41	1.9	40	87	7	115	27	1	2	68	1.10
22993415--22993442	7	4.0	7	100	0	56	14	0	0	85	0.59
22993378--22993476	51	1.9	52	85	4	139	31	1	2	65	1.10
22993344--22993446	43	2.5	43	82	7	115	32	1	1	64	1.16
22993334--22993476	50	3.1	43	70	19	119	33	2	1	62	1.18
22993433--22993512	28	2.8	28	78	12	74	42	3	1	52	1.27
22993449--22993512	27	2.3	26	82	10	74	46	3	1	48	1.27
22994830--22994887	24	2.3	24	79	5	62	41	10	5	43	1.61
22994889--22994993	27	3.9	28	72	16	96	44	12	3	39	1.60
22994889--22995037	79	1.9	79	82	0	190	42	13	3	40	1.61
22996410--22996442	17	1.9	17	88	11	50	51	0	0	48	1.00
23010138--23010168	16	1.9	16	93	0	53	51	29	0	19	1.47
23010368--23010408	13	3.2	13	86	6	57	63	7	0	29	1.21
23014320--23014362	22	2.0	22	95	0	77	44	18	11	25	1.84
23024116--23024189	2	36.5	2	86	2	67	6	2	40	48	1.44
23024190--23024225	2	18.0	2	100	0	72	50	0	0	50	1.00
23025706--23025815	37	3.0	37	89	0	175	21	37	10	30	1.88
23032252--23032297	20	2.3	20	88	0	65	30	2	23	43	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23033531--23033555	13	1.9	13	100	0	50	44	0	8	48	1.32
23038143--23038188	20	2.3	20	88	0	65	30	2	23	43	1.66
23038152--23038189	20	1.9	20	94	0	67	31	0	28	39	1.57
23039421--23039445	13	1.9	13	100	0	50	44	0	8	48	1.32
23051977--23052113	35	3.9	34	88	1	175	26	36	13	24	1.92
23051977--23052113	70	2.0	70	86	2	195	26	36	13	24	1.92
23054050--23054126	33	2.3	33	80	8	86	35	32	10	22	1.88
23055333--23055381	2	24.5	2	95	0	89	48	2	0	48	1.12
23055543--23055604	18	3.3	18	70	16	54	45	6	4	43	1.51
23055544--23055660	38	3.1	38	82	3	146	38	8	5	47	1.59
23061532--23061574	18	2.4	18	85	11	54	69	2	0	27	1.00
23061694--23061718	2	12.5	2	100	0	50	52	0	0	48	1.00
23062924--23063001	33	2.4	33	80	8	88	23	10	32	34	1.88
23076616--23076651	15	2.4	15	95	0	63	27	2	11	58	1.46
23076697--23076736	5	8.0	5	91	0	62	40	0	22	37	1.54
23081045--23081090	20	2.3	20	92	0	74	28	6	21	43	1.77
23081137--23081189	28	1.9	28	85	11	74	26	22	18	32	1.97
23084407--23084443	19	2.0	19	89	5	58	59	0	0	40	0.97
23084427--23084459	14	2.4	14	90	5	50	60	0	6	33	1.21
23096168--23096206	2	19.5	2	100	0	78	48	0	0	51	1.00
23096425--23096558	59	2.3	59	96	2	243	29	14	7	49	1.70
23096425--23096558	29	4.5	30	70	12	107	29	14	7	49	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23100085--23100124	19	2.2	19	90	4	64	5	22	2	70	1.19
23106225--23106374	69	2.1	72	83	10	186	32	4	1	62	1.22
23113583--23113620	20	1.9	20	100	0	76	28	0	28	42	1.56
23117092--23117194	46	2.2	46	94	0	179	25	19	6	48	1.73
23120165--23120371	73	2.8	73	87	4	285	42	15	19	22	1.89
23126463--23126515	24	2.2	24	96	0	97	32	24	9	33	1.87
23127822--23128204	179	2.1	179	79	7	402	35	14	13	37	1.84
23131921--23131979	30	2.0	30	86	6	84	28	11	10	49	1.72
23137191--23137240	6	7.8	6	78	12	55	26	0	0	74	0.83
23137177--23137234	27	2.2	27	85	11	77	29	1	0	68	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97