genome.fa.s9.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  31  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12933783--12933825	16	2.6	17	85	7	61	69	9	2	18	1.26
12940156--12940224	31	2.2	31	79	5	77	17	10	21	50	1.75
12945066--12945132	35	1.9	35	96	0	125	53	13	10	22	1.69
12945330--12945403	16	4.4	16	71	20	53	70	1	5	22	1.16
12949846--12949922	35	2.2	35	90	0	118	28	14	24	32	1.94
12954858--12954940	35	2.4	35	83	0	103	30	15	26	27	1.96
12955471--12955516	16	2.9	15	83	3	56	73	4	0	21	1.00
12966220--12966318	50	2.0	48	90	3	153	37	20	20	21	1.94
12969400--12969475	34	2.3	34	88	6	111	23	1	14	60	1.42
12971737--12971824	44	2.0	44	95	0	158	37	14	10	37	1.81
12984697--12984764	34	2.0	35	82	2	84	32	26	10	30	1.90
12993393--12994056	330	2.0	331	87	2	969	35	13	19	31	1.90
13000350--13000379	15	1.9	16	93	6	53	50	3	0	46	1.18
13001391--13001437	23	2.0	23	87	0	67	31	21	10	36	1.88
13002415--13002462	24	2.0	25	84	12	64	35	16	0	47	1.47
13003863--13004004	38	3.7	38	75	6	126	31	21	15	31	1.94
13004980--13005113	60	2.2	60	95	0	241	39	9	6	44	1.64
13005633--13005658	13	2.0	13	100	0	52	46	15	7	30	1.74
13010732--13010762	15	2.1	15	93	0	53	54	0	29	16	1.42
13011669--13011832	26	6.1	27	82	4	163	45	10	17	26	1.80
13011689--13011832	54	2.7	53	79	5	157	46	10	16	26	1.79
13011669--13011832	80	2.0	81	84	3	215	45	10	17	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13022347--13022387	21	2.0	21	86	9	59	29	2	9	58	1.43
13023866--13023980	28	4.2	28	82	4	135	47	10	13	27	1.76
13023857--13023965	54	2.0	56	85	5	150	46	9	12	31	1.73
13023866--13023980	54	2.1	54	83	1	140	47	10	13	27	1.76
13024246--13024687	172	2.6	172	88	2	642	26	19	8	45	1.78
13026637--13026736	31	3.2	31	80	2	85	30	11	10	49	1.71
13032990--13033091	49	2.1	49	100	0	204	29	13	18	38	1.89
13033315--13033347	3	11.0	3	93	0	57	66	3	0	30	1.06
13048674--13048710	19	1.9	19	88	0	56	45	21	16	16	1.84
13058867--13058930	2	32.0	2	80	0	65	40	1	9	48	1.45
13058867--13058930	18	3.7	18	83	4	78	40	1	9	48	1.45
13059511--13059651	71	2.0	72	84	1	185	24	29	9	36	1.88
13059880--13059944	23	2.7	25	80	7	89	30	10	18	40	1.85
13131364--13131409	18	2.5	19	82	10	51	63	13	2	21	1.40
13133265--13133514	127	2.0	127	87	1	367	28	20	19	32	1.97
13147266--13147368	38	2.6	40	81	3	120	20	16	40	22	1.91
13149705--13149768	21	3.0	21	83	0	92	29	25	9	35	1.87
13157035--13157098	21	3.0	21	83	0	92	31	25	9	34	1.87
13168068--13168132	22	3.0	22	95	0	112	27	7	23	41	1.81
13173325--13173385	17	3.4	17	67	20	52	44	9	0	44	1.37
13173324--13173396	37	2.0	36	97	0	128	42	10	1	43	1.48
13175615--13175672	28	2.1	28	81	12	66	27	20	24	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13176805--13176829	13	1.9	13	100	0	50	44	0	8	48	1.32
13187685--13187709	13	1.9	13	100	0	50	48	8	0	44	1.32
13188822--13188875	28	2.0	27	88	3	81	20	31	24	24	1.98
13188920--13188957	19	2.0	19	94	0	67	42	34	0	23	1.55
13199823--13200030	73	2.8	74	83	3	260	23	20	16	39	1.91
13203383--13203434	28	1.9	27	84	7	70	28	21	19	30	1.97
13203480--13203525	20	2.3	20	96	0	83	45	21	4	28	1.71
13204914--13204952	20	2.0	20	85	10	53	64	5	15	15	1.46
13274862--13274902	20	2.0	20	100	0	82	41	9	9	39	1.71
13283423--13283460	19	2.0	19	100	0	76	42	31	0	26	1.56
13283868--13283918	19	2.7	19	81	6	59	41	3	0	54	1.19
13293723--13293782	30	2.1	29	81	6	68	31	8	21	38	1.83
13303287--13303426	31	4.5	31	91	1	228	30	16	21	31	1.95
13307244--13307408	86	1.9	86	91	0	267	22	16	28	32	1.95
13307231--13307445	86	2.5	86	83	3	218	23	17	29	29	1.97
13307317--13307796	117	4.1	117	85	0	636	23	19	28	28	1.98
13307195--13307587	203	1.9	203	80	5	454	24	18	28	29	1.98
13311540--13311628	31	2.9	31	86	0	115	32	21	16	29	1.95
13311723--13312042	104	3.0	103	83	3	370	43	32	12	11	1.77
13311723--13312241	214	2.4	214	79	4	513	44	31	10	13	1.78
13311716--13312207	269	1.8	268	84	3	677	44	31	11	13	1.78
13311705--13312245	55	9.9	55	78	5	481	44	31	10	13	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13312635--13312695	23	2.7	23	89	0	86	26	31	18	24	1.97
13312755--13312799	23	2.0	23	82	8	56	24	35	11	28	1.90
13312787--13312891	47	2.2	47	87	0	147	23	35	16	24	1.95
13312793--13312869	23	3.3	23	67	3	64	23	33	18	24	1.96
13312933--13312998	23	2.8	23	79	6	71	22	36	15	25	1.93
13313004--13313059	23	2.4	23	78	0	58	23	37	10	28	1.88
13313104--13313156	23	2.3	23	86	0	70	22	30	16	30	1.96
13312831--13313156	104	3.1	104	82	3	377	23	33	15	28	1.95
13313038--13313252	81	2.7	81	78	2	234	25	34	13	26	1.93
13313185--13313228	23	1.9	23	95	0	79	25	40	9	25	1.84
13313183--13313239	23	2.5	23	82	0	78	22	36	12	28	1.90
13313104--13313277	81	2.1	81	80	2	188	27	32	12	27	1.93
13326192--13326313	24	4.8	26	75	8	117	40	15	13	30	1.86
13326173--13326313	50	2.8	50	81	2	167	39	16	13	31	1.87
13328564--13328618	26	2.3	23	80	17	67	27	32	18	21	1.96
13328571--13328622	26	2.0	26	96	0	95	25	30	21	23	1.99
13328824--13328888	24	2.7	24	79	9	62	41	20	12	26	1.87
13330581--13330631	6	8.5	6	79	16	61	15	1	1	80	0.89
13330583--13330644	18	3.6	16	78	20	54	14	3	1	80	0.91
13330590--13330637	11	4.1	11	86	10	60	16	2	2	79	0.93
13330674--13331150	165	2.9	164	87	3	669	36	7	15	40	1.76
13332504--13332591	35	2.5	35	83	3	115	29	28	13	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13338300--13338341	19	2.3	19	88	8	61	23	0	14	61	1.32
13341352--13341396	16	2.8	17	80	16	51	68	2	8	20	1.27
13341740--13341802	13	4.5	13	78	20	65	28	1	7	61	1.33
13341734--13341821	30	3.0	30	83	9	110	27	2	9	61	1.38
13341732--13341829	42	2.3	42	84	3	135	24	2	8	65	1.31
13341732--13341829	12	7.2	12	71	24	61	24	2	8	65	1.31
13342465--13342505	21	2.0	21	85	0	55	29	19	14	36	1.92
13343199--13343247	23	2.0	24	88	11	73	67	8	0	24	1.18
13353123--13353169	15	3.1	15	87	0	67	51	17	4	27	1.64
13356055--13356110	28	2.0	27	82	3	67	25	17	17	39	1.92
13363617--13363703	37	2.4	37	82	7	97	22	21	17	37	1.93
13365621--13365657	19	1.9	19	94	0	65	29	0	27	43	1.55
13365701--13365751	27	1.9	27	84	11	70	29	21	23	25	1.99
13370366--13370399	9	3.7	9	88	7	50	14	2	0	82	0.79
13373772--13373840	31	2.3	31	97	2	131	24	2	60	11	1.44
13377378--13377418	18	2.2	19	86	4	57	78	2	4	14	1.03
13381407--13381553	68	2.2	68	83	3	190	30	26	15	27	1.96
13386716--13386834	57	2.1	57	100	0	238	42	14	13	30	1.84
13393441--13393639	73	2.7	72	86	4	274	40	17	21	20	1.92
13395121--13395151	3	10.3	3	100	0	62	67	0	32	0	0.91
13403867--13404006	20	6.7	20	66	22	65	65	2	30	2	1.16
13403867--13404046	34	5.3	33	72	21	115	67	1	28	1	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13403962--13404049	14	6.4	14	80	11	65	76	0	23	0	0.79
13404621--13404666	2	23.5	2	95	4	85	52	0	0	47	1.00
13407725--13407764	21	2.0	20	90	5	62	52	2	17	27	1.57
13417841--13417878	20	1.9	20	84	10	51	34	2	2	60	1.24
13418062--13418107	18	2.5	19	80	16	60	41	0	2	56	1.11
13418128--13418178	21	2.4	22	78	12	54	41	0	1	56	1.10
13418151--13418197	12	4.0	12	83	2	60	36	0	2	61	1.08
13420368--13420408	2	20.5	2	100	0	82	48	0	0	51	1.00
13424964--13425086	35	3.5	35	84	3	149	18	21	18	41	1.91
13428067--13428104	19	2.0	19	94	0	67	28	0	28	42	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97