genome.fa.s9.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  82  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32393069--32393268	109	1.8	110	85	1	285	39	12	11	37	1.79
32393268--32393306	18	2.2	18	100	0	78	10	5	23	61	1.48
32393400--32393519	58	2.0	60	90	3	190	29	11	21	37	1.89
32393887--32393925	19	2.0	20	90	10	62	46	2	0	51	1.14
32393996--32394028	15	2.1	16	94	5	59	39	6	9	45	1.61
32394410--32394458	14	3.6	14	91	2	73	38	2	2	57	1.22
32394741--32394797	30	1.9	30	85	0	78	33	7	7	52	1.55
32399979--32400042	27	2.4	27	83	0	92	75	0	3	21	0.95
32399979--32400055	12	5.9	13	79	15	88	74	0	2	23	0.95
32399985--32400076	32	3.0	31	80	12	86	69	1	4	25	1.13
32403244--32403284	18	2.4	17	88	8	64	82	2	2	12	0.86
32406813--32406847	18	2.0	18	88	5	54	65	0	20	14	1.26
32407226--32407382	85	1.9	84	87	1	233	50	8	27	13	1.69
32408524--32409199	142	4.8	142	89	0	989	26	23	15	34	1.95
32409232--32409377	38	3.9	38	84	3	172	23	15	16	44	1.85
32410825--32410863	17	2.3	17	86	8	53	76	0	5	17	0.96
32411306--32411361	14	4.2	13	73	10	51	71	1	1	25	1.05
32411306--32411358	17	2.9	17	81	10	61	71	1	1	24	1.06
32411638--32411703	12	5.2	12	77	22	73	72	0	4	22	1.02
32411638--32411716	27	3.0	26	76	21	85	72	0	5	22	1.04
32413386--32413450	24	2.8	24	77	6	64	67	0	26	6	1.13
32413321--32413673	160	2.2	159	89	2	526	44	14	24	16	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32416923--32416985	28	2.2	28	94	0	108	33	4	17	44	1.70
32417890--32418099	94	2.3	92	82	8	241	40	7	13	38	1.72
32427562--32427595	17	1.9	17	88	5	50	76	5	14	2	1.09
32428057--32428342	146	2.0	147	86	4	409	38	13	15	31	1.87
32430738--32430789	26	2.0	26	85	14	72	48	7	0	44	1.31
32431291--32431332	17	2.4	18	80	11	52	69	0	2	28	1.01
32439842--32439883	3	14.0	3	94	0	75	64	0	2	33	1.07
32450863--32450902	21	1.9	21	85	10	55	72	5	15	7	1.24
32452920--32452954	16	2.1	17	89	5	54	85	0	11	2	0.69
32461097--32461123	4	6.8	4	100	0	54	22	0	0	77	0.76
32464061--32464100	2	20.0	2	100	0	80	50	0	0	50	1.00
32466337--32466395	27	2.3	27	88	8	88	44	0	10	45	1.37
32466908--32466975	35	1.9	35	93	0	118	20	0	20	58	1.39
32466817--32467115	160	1.9	159	90	0	472	35	6	13	44	1.68
32474137--32474171	18	1.9	18	88	11	54	57	0	0	42	0.99
32474151--32474225	29	2.6	30	80	6	91	64	0	0	36	0.94
32474478--32474503	4	6.5	4	100	0	52	46	0	0	53	1.00
32475006--32475057	2	26.0	2	88	7	79	48	1	0	50	1.12
32486178--32486302	63	2.0	63	88	3	189	24	20	10	45	1.81
32488467--32488495	3	9.7	3	100	0	58	65	0	0	34	0.93
32504955--32504981	2	13.5	2	100	0	54	0	48	0	51	1.00
32515386--32515410	13	1.9	13	100	0	50	92	8	0	0	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32515752--32515781	2	15.0	2	100	0	60	50	0	0	50	1.00
32524187--32524387	102	2.0	101	89	2	305	28	16	10	43	1.82
32527574--32527628	26	2.1	25	80	12	58	49	1	0	49	1.11
32527724--32527762	17	2.4	17	86	4	62	61	0	2	35	1.10
32535615--32535660	19	2.4	20	82	10	60	54	0	2	43	1.12
32540796--32540820	2	12.5	2	100	0	50	0	0	48	52	1.00
32540675--32541020	175	2.0	171	98	1	656	20	9	18	50	1.75
32540971--32540995	2	12.5	2	100	0	50	0	0	48	52	1.00
32555400--32555436	18	2.1	18	89	0	56	37	8	21	32	1.83
32567104--32567128	3	8.3	3	100	0	50	68	0	0	32	0.90
32577793--32577875	35	2.4	35	97	0	157	34	6	25	33	1.80
32583154--32583180	4	6.8	4	100	0	54	77	0	0	22	0.76
32584909--32584957	21	2.3	21	82	0	62	38	4	12	44	1.61
32585158--32585225	21	3.2	21	81	8	75	27	7	19	45	1.76
32585261--32585302	19	2.2	19	83	12	50	33	7	11	47	1.68
32585324--32585374	21	2.4	21	80	6	59	47	29	1	21	1.62
32585372--32585439	21	3.2	21	71	8	66	44	16	4	35	1.67
32585372--32585539	42	4.1	41	77	7	146	42	17	6	33	1.75
32585507--32585560	21	2.6	21	81	0	63	44	24	1	29	1.64
32585481--32585637	42	3.8	41	73	5	118	43	20	3	31	1.69
32585613--32585652	21	1.9	21	89	0	62	45	27	2	25	1.66
32585365--32585644	84	3.4	84	77	8	225	42	20	5	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32600719--32600758	21	2.0	20	85	14	55	27	0	7	65	1.20
32600731--32600789	31	1.9	31	82	6	75	27	0	5	67	1.11
32600880--32600991	56	2.0	56	94	0	197	29	8	16	44	1.78
32603406--32603595	103	1.8	103	81	0	236	46	13	16	24	1.82
32604627--32604706	35	2.2	36	82	4	90	17	6	20	56	1.62
32604615--32604724	37	3.0	37	80	5	125	19	7	20	52	1.69
32607933--32607977	23	2.0	23	100	0	90	35	13	17	33	1.89
32627246--32627291	24	2.0	23	86	4	65	47	10	4	36	1.58
32627373--32627413	13	3.1	14	80	16	52	51	0	0	48	1.00
32627386--32627668	153	1.9	153	96	3	527	44	7	9	38	1.65
32631225--32631320	29	3.3	28	81	5	102	32	5	10	52	1.58
32631715--32631745	16	2.0	16	93	6	55	61	0	12	25	1.32
32632301--32632350	19	2.7	18	79	20	59	52	0	2	46	1.12
32632316--32632358	13	3.0	13	83	16	50	53	0	0	46	1.00
32635081--32635117	18	2.1	18	89	0	56	43	16	5	35	1.71
32637717--32637758	6	7.0	6	91	0	57	78	0	19	2	0.86
32644337--32644387	22	2.3	21	75	15	50	27	7	19	45	1.78
32658708--32658827	2	62.0	2	82	15	155	46	1	0	50	1.17
32663334--32663366	12	2.8	12	95	0	57	69	0	30	0	0.88
32663854--32663890	2	18.5	2	100	0	74	48	0	51	0	1.00
32669583--32669789	38	5.4	38	77	6	125	28	16	22	32	1.96
32669618--32669805	38	4.9	38	75	7	148	29	15	21	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32670028--32670083	22	2.5	22	97	0	103	39	12	14	33	1.83
32676655--32676697	22	2.0	23	90	9	72	46	9	9	34	1.68
32683585--32683618	16	2.1	16	88	5	50	58	17	5	17	1.57
32683807--32683849	21	2.0	21	82	8	52	55	6	27	9	1.57
32684636--32684686	26	2.0	26	100	0	102	27	23	7	41	1.82
32685941--32685985	7	6.4	7	94	0	72	11	17	31	40	1.85
32692351--32692380	13	2.3	13	94	0	51	43	3	0	53	1.17
32692483--32692542	28	2.1	30	81	12	72	53	5	3	38	1.39
32692487--32692550	28	2.3	28	75	5	67	56	4	3	35	1.36
32701309--32701415	2	54.0	2	84	12	141	48	1	1	46	1.23
32714436--32714498	23	2.9	21	75	13	65	46	1	9	42	1.46
32714298--32714851	212	2.6	214	84	2	707	44	5	7	41	1.57
32714854--32714902	22	2.2	22	82	10	64	51	2	6	40	1.38
32715206--32715251	18	2.6	18	96	3	85	56	4	0	39	1.19
32715345--32715390	14	3.6	14	72	27	57	30	21	21	26	1.99
32715343--32715401	23	2.6	23	94	0	100	35	20	18	25	1.95
32717230--32717267	18	2.1	19	85	5	51	50	0	36	13	1.42
32717470--32717521	20	2.6	20	82	11	70	15	1	3	78	0.98
32717435--32717531	34	2.8	35	74	18	89	15	4	4	76	1.09
32718374--32718433	27	2.2	27	82	8	68	28	13	16	41	1.86
32721415--32721617	102	2.0	101	99	0	388	41	6	10	40	1.66
32730138--32730173	9	4.0	9	88	0	54	75	5	0	19	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32733502--32733546	21	2.1	23	84	12	60	28	2	8	60	1.39
32734872--32734913	16	2.6	16	82	14	50	54	2	2	40	1.26
32741142--32741205	24	2.6	24	82	9	67	43	10	14	31	1.79
32741197--32741326	29	4.5	29	72	13	117	37	12	14	35	1.84
32741717--32741762	23	2.0	23	83	8	58	50	10	28	10	1.71
32742199--32742365	90	1.9	90	91	2	273	29	16	19	34	1.94
32748512--32748541	15	2.0	15	93	0	51	43	20	3	33	1.68
32754345--32754370	2	13.0	2	100	0	52	50	0	0	50	1.00
32763925--32763962	19	2.0	19	94	0	67	42	28	0	28	1.56
32767669--32767731	24	2.7	23	70	18	58	60	11	1	26	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97