genome.fa.s9.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  93  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36763440--36763480	21	2.0	21	90	9	66	4	19	4	70	1.24
36772298--36772393	49	2.0	49	100	0	192	23	28	12	35	1.91
36772687--36772721	18	2.0	18	88	5	54	25	2	0	71	1.00
36782144--36782247	35	2.9	36	70	20	85	46	1	0	51	1.12
36782195--36782227	17	1.9	17	93	0	57	51	3	0	45	1.16
36790485--36790526	20	2.1	20	100	0	84	45	16	19	19	1.86
36799881--36800018	71	2.0	70	89	4	215	28	20	14	36	1.92
36800696--36800733	19	2.0	19	100	0	76	63	5	5	26	1.37
36801174--36801202	15	2.0	15	93	6	51	82	0	17	0	0.66
36801167--36801201	16	2.3	15	90	5	52	85	0	11	2	0.69
36807203--36807250	25	2.0	25	84	12	64	43	0	4	52	1.20
36847059--36847100	21	2.0	21	86	9	59	38	4	4	52	1.44
36847374--36847413	2	20.5	2	89	5	64	0	47	0	52	1.00
36860551--36860919	47	7.9	47	81	3	384	27	16	31	23	1.96
36860551--36860917	94	3.9	94	83	3	427	27	16	31	23	1.96
36860907--36861026	53	2.3	53	91	2	188	25	19	27	27	1.99
36861518--36861678	31	5.0	31	83	10	178	26	16	19	37	1.92
36861558--36861632	38	2.0	38	100	0	150	25	16	21	37	1.93
36861525--36861792	69	4.0	68	80	8	289	24	17	20	38	1.93
36861531--36861745	73	3.0	71	87	2	290	25	17	20	37	1.93
36861678--36861793	31	3.7	31	83	0	142	25	18	18	37	1.94
36861512--36861804	104	2.9	104	74	7	258	25	17	19	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36864113--36864349	31	7.6	31	78	1	233	25	18	19	36	1.94
36865888--36866011	47	2.5	48	83	8	135	36	9	4	49	1.57
36865895--36865963	16	4.4	16	72	15	63	40	8	2	47	1.49
36867565--36867977	31	13.3	31	84	0	466	25	17	20	37	1.93
36868885--36869032	31	4.8	31	89	0	206	28	20	21	29	1.98
36868885--36869053	93	1.8	93	83	5	225	27	21	20	29	1.98
36872860--36872915	23	2.4	23	87	0	76	30	30	16	23	1.96
36872944--36873121	55	3.2	55	82	0	185	42	28	15	14	1.85
36872969--36873132	55	3.0	54	83	4	195	43	26	15	14	1.85
36876359--36876769	219	1.9	219	86	3	594	31	27	14	27	1.95
36876851--36876909	31	1.9	31	83	10	77	52	3	0	44	1.17
36877665--36877758	33	2.8	33	75	4	91	65	2	5	26	1.25
36880192--36880221	14	2.1	14	100	0	60	36	13	20	30	1.90
36907258--36907296	4	9.5	4	84	15	53	76	0	0	23	0.78
36907258--36907302	21	2.1	21	88	8	65	77	0	2	20	0.87
36932125--36932163	13	3.1	13	85	3	53	38	0	5	56	1.22
36939412--36939472	27	2.2	28	82	8	72	8	3	19	68	1.29
36939734--36939830	15	6.6	14	72	16	72	13	3	4	79	1.00
36939745--36939786	19	2.3	18	80	15	50	7	4	7	80	1.00
36941132--36941163	16	2.0	16	93	0	55	18	15	18	46	1.84
36955795--36955836	20	2.1	20	91	8	68	28	21	14	35	1.92
36961042--36961087	24	1.9	24	95	0	83	43	4	15	36	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36961818--36963405	227	7.0	227	100	0	3176	30	12	17	40	1.86
36967479--36967516	19	2.0	19	94	0	67	42	28	0	28	1.56
36968666--36968751	33	2.5	33	85	10	104	65	0	6	27	1.18
36970859--36971245	194	2.0	192	93	2	661	39	16	12	31	1.86
36975987--36976040	28	2.0	27	82	10	65	29	16	18	35	1.93
36977367--36977423	19	2.9	19	78	2	60	43	0	5	50	1.24
36977397--36977437	20	2.0	22	90	9	68	41	0	4	53	1.22
36977400--36977466	29	2.4	28	76	16	77	41	0	4	53	1.21
36984601--36984656	23	2.3	24	79	11	62	53	1	0	44	1.11
36990672--36990713	21	2.0	21	95	0	75	19	40	0	40	1.51
37002738--37002763	3	8.7	3	100	0	52	0	34	0	65	0.93
37002866--37002907	21	2.0	21	95	0	75	19	40	0	40	1.51
37006757--37007029	136	2.0	136	100	0	546	36	11	30	21	1.89
37019269--37019298	15	2.0	15	93	0	51	23	43	0	33	1.54
37055395--37055427	2	16.5	2	100	0	66	0	48	0	51	1.00
37060577--37060610	16	2.2	16	89	5	52	41	2	2	52	1.31
37060687--37060713	9	3.0	9	100	0	54	33	11	0	55	1.35
37060688--37060743	9	6.3	9	81	4	51	35	8	7	48	1.62
37061602--37061643	21	2.0	21	90	0	66	23	4	52	19	1.65
37064338--37064391	11	4.7	11	75	24	58	59	14	24	1	1.46
37074092--37074143	25	2.1	25	82	7	61	36	1	9	51	1.46
37085950--37085974	6	4.2	6	100	0	50	16	0	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37107988--37108029	2	21.0	2	90	0	66	50	4	0	45	1.23
37107987--37108037	12	4.4	12	82	9	61	47	7	1	43	1.43
37115230--37115413	48	3.8	48	98	0	350	38	15	16	29	1.90
37116436--37116465	2	15.0	2	92	0	51	53	0	46	0	1.00
37125826--37125868	22	1.9	22	86	13	61	51	2	0	46	1.13
37125959--37126075	23	5.2	23	65	21	68	47	3	2	47	1.33
37125951--37126078	46	2.9	44	82	8	143	47	3	2	46	1.33
37125965--37126094	46	2.9	44	81	4	152	47	2	3	46	1.30
37125965--37126078	22	5.1	22	71	12	106	44	2	2	50	1.30
37128207--37128266	32	1.9	32	93	3	104	51	11	6	30	1.64
37128212--37128301	29	3.0	28	80	11	81	50	7	6	35	1.58
37135539--37135584	2	23.0	2	100	0	92	50	0	0	50	1.00
37146831--37146884	2	30.0	2	79	20	66	46	0	0	53	1.00
37146831--37146884	11	5.0	11	86	10	76	46	0	0	53	1.00
37146827--37146884	13	4.5	13	82	16	68	44	0	0	55	0.99
37146831--37146884	7	7.5	8	84	15	66	46	0	0	53	1.00
37147408--37147439	6	5.3	6	100	0	64	50	34	15	0	1.45
37150834--37151041	103	2.0	103	93	0	353	32	14	20	32	1.93
37151403--37151480	39	2.0	39	94	0	138	35	25	7	30	1.84
37167877--37167915	3	13.0	3	94	0	69	2	0	30	66	1.05
37168104--37168141	20	1.9	20	89	10	60	78	5	0	15	0.91
37168287--37168385	50	2.0	49	96	4	173	49	2	0	47	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37168304--37168386	23	3.4	23	74	19	87	49	1	0	48	1.09
37169229--37169265	16	2.3	16	90	9	58	10	0	5	83	0.79
37169244--37169271	13	2.2	13	100	0	56	14	0	7	78	0.95
37171317--37171374	30	1.9	31	89	3	91	53	5	8	32	1.54
37179286--37179342	27	2.1	27	87	6	80	29	43	12	14	1.81
37194018--37194108	37	2.5	37	94	0	164	53	10	23	12	1.69
37205832--37205918	42	2.1	42	93	0	147	19	24	14	41	1.89
37207003--37207034	3	10.7	3	100	0	64	0	0	65	34	0.93
37212338--37212516	73	2.4	74	80	3	209	49	22	7	20	1.73
37213416--37213453	19	1.9	19	89	5	58	18	0	0	81	0.69
37226530--37226559	2	15.0	2	100	0	60	50	0	0	50	1.00
37228679--37228852	88	2.0	88	96	0	321	31	17	19	31	1.95
37237249--37237375	54	2.4	54	89	7	215	33	1	7	56	1.38
37239757--37240068	103	3.0	103	95	0	554	25	18	16	40	1.90
37244172--37244215	17	2.6	17	79	13	54	61	9	0	29	1.27
37249614--37249657	17	2.6	17	79	13	54	61	9	0	29	1.27
37253157--37253190	17	2.0	17	100	0	68	58	11	5	23	1.55
37259550--37259574	9	2.8	9	100	0	50	20	24	32	24	1.98
37268643--37268697	27	2.0	27	85	0	74	27	38	25	9	1.86
37269654--37269694	15	2.7	15	88	0	55	4	46	0	48	1.23
37269646--37269723	12	7.0	12	82	8	69	7	42	0	50	1.31
37269650--37269702	15	3.6	14	77	10	52	5	43	0	50	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37269674--37269725	24	2.2	24	92	0	86	11	36	0	51	1.38
37280744--37280800	23	2.5	23	85	0	78	29	19	19	31	1.96
37280773--37280830	30	1.9	30	85	0	80	20	13	32	32	1.92
37289836--37289917	2	42.5	2	88	11	127	50	0	0	48	1.01
37290089--37290126	19	2.1	19	90	5	60	50	0	0	50	1.00
37292068--37292107	13	3.2	13	82	7	55	35	0	0	65	0.93
37298817--37298875	21	2.9	21	82	2	66	54	1	0	44	1.10
37302518--37302782	131	2.1	131	85	6	355	40	1	2	56	1.19
37302709--37302777	27	2.9	23	81	12	77	43	0	0	56	0.99
37302727--37302824	41	2.4	42	83	8	121	43	0	3	53	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97