genome.fa.s9.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  44  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17924029--17924088	30	2.1	30	81	6	70	33	6	20	40	1.78
17926631--17926706	33	2.3	34	75	6	84	35	17	7	39	1.78
17926810--17926865	29	1.9	29	89	7	87	50	1	12	35	1.51
17937810--17937844	11	3.3	11	84	8	54	65	14	20	0	1.26
17943079--17943132	28	1.9	28	92	0	90	25	16	22	35	1.95
17943274--17943304	5	6.2	5	96	0	53	38	0	22	38	1.54
17983258--17983352	36	2.7	36	83	1	111	28	11	23	36	1.90
17983278--17983362	36	2.3	37	83	2	100	31	11	23	32	1.91
17983644--17984502	285	3.0	284	89	0	1261	31	9	20	39	1.84
17992679--17992703	12	2.1	12	100	0	50	36	0	16	48	1.46
17992768--17992883	60	1.9	60	89	0	178	50	10	18	20	1.75
17993606--17993630	12	2.1	12	100	0	50	36	0	16	48	1.46
17993694--17993809	59	2.0	59	94	0	205	49	9	19	21	1.77
18006639--18006716	40	2.0	40	92	0	129	44	6	12	35	1.68
18006740--18006785	21	2.1	22	84	11	60	63	0	0	36	0.95
18012409--18012445	16	2.3	16	90	0	56	45	0	5	48	1.25
18013259--18013312	20	2.6	21	75	24	60	33	7	9	50	1.62
18020316--18020353	20	1.9	20	100	0	76	21	23	10	44	1.83
18021060--18021101	21	2.1	20	86	8	59	23	0	9	66	1.21
18025226--18025263	19	2.0	19	94	0	67	26	0	28	44	1.54
18026496--18026520	13	1.9	13	100	0	50	44	0	8	48	1.32
18039310--18039338	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18047505--18047554	22	2.3	23	80	16	61	52	22	10	16	1.73
18062105--18062157	20	2.6	19	77	11	52	69	1	0	28	0.99
18071711--18071828	37	3.1	38	74	8	116	24	38	16	21	1.93
18078834--18078877	22	2.0	22	86	0	61	40	15	6	36	1.74
18090040--18090087	19	2.6	19	83	3	62	52	0	10	37	1.36
18091040--18091084	4	11.5	4	81	13	58	73	0	24	2	0.95
18091027--18091087	23	2.7	24	77	10	65	67	0	31	1	1.01
18091031--18091085	27	2.0	29	89	7	87	69	0	29	1	0.99
18091040--18091097	27	2.1	27	87	6	82	72	0	25	1	0.94
18098375--18102266	316	12.4	315	83	3	4406	28	21	8	41	1.82
18098375--18102266	947	4.1	944	83	3	4547	28	21	8	41	1.82
18098375--18102266	631	6.2	631	83	2	4582	28	21	8	41	1.82
18106128--18106936	316	2.6	315	83	2	960	28	22	8	41	1.82
18110982--18111310	90	3.7	90	88	3	468	37	28	13	20	1.90
18110981--18111310	179	1.8	180	88	4	515	37	28	13	20	1.91
18114141--18114204	25	2.6	25	89	0	92	28	25	1	45	1.63
18116044--18116069	2	13.0	2	100	0	52	50	0	0	50	1.00
18118388--18118434	22	2.1	23	84	11	62	31	6	6	55	1.51
18121054--18121123	30	2.2	32	85	9	92	37	17	15	30	1.91
18139657--18139842	35	5.5	35	75	13	165	33	25	15	25	1.95
18139697--18139845	35	4.5	32	81	9	172	36	26	13	23	1.92
18139666--18139845	67	2.7	67	89	1	281	35	26	13	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18140709--18140745	17	2.2	17	90	0	56	5	35	27	32	1.79
18150382--18150530	35	4.5	32	78	12	156	36	27	12	23	1.90
18150355--18150530	67	2.6	67	87	3	248	36	26	11	25	1.91
18152219--18152311	34	2.7	34	81	3	96	35	22	10	31	1.89
18152219--18152292	34	2.1	36	85	5	98	33	21	9	35	1.86
18152247--18152339	34	2.7	34	82	9	109	35	22	13	27	1.93
18162649--18162675	14	1.9	14	100	0	54	37	7	0	55	1.28
18162648--18162681	14	2.4	14	85	5	50	41	8	0	50	1.34
18195402--18195436	16	2.1	17	89	5	54	48	2	8	40	1.49
18201421--18201447	2	13.5	2	100	0	54	48	0	51	0	1.00
18212089--18212113	13	1.9	13	100	0	50	32	20	24	24	1.98
18218417--18218441	13	1.9	13	100	0	50	48	0	0	52	1.00
18219595--18219658	28	2.2	29	86	2	85	42	20	9	28	1.83
18223193--18223217	13	1.9	13	100	0	50	48	0	0	52	1.00
18239329--18239361	15	2.2	16	89	10	52	42	0	0	57	0.98
18239995--18240028	11	3.1	11	84	16	52	55	0	0	44	0.99
18247114--18247166	6	8.8	6	85	0	70	49	5	1	43	1.37
18247114--18247166	4	13.2	4	91	0	70	49	5	1	43	1.37
18248432--18248486	2	27.5	2	88	0	83	56	0	43	0	0.99
18260462--18260626	73	2.2	73	79	4	179	24	21	14	40	1.90
18260513--18260687	73	2.4	73	77	4	174	24	21	14	38	1.91
18261845--18261902	25	2.3	25	79	5	64	48	8	17	25	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18262654--18262711	20	2.6	23	76	18	68	36	20	5	37	1.75
18266558--18266607	21	2.4	22	80	16	61	44	14	14	28	1.83
18267943--18268124	73	2.5	72	85	2	229	23	19	17	39	1.92
18267998--18268178	73	2.4	74	79	8	199	23	17	20	39	1.92
18269243--18269306	20	3.2	20	77	2	74	28	3	26	42	1.70
18269959--18270116	70	2.2	70	82	5	194	32	22	16	28	1.96
18270485--18270541	30	1.9	30	92	0	96	42	12	14	31	1.82
18275286--18275418	35	3.9	35	76	9	114	27	11	27	34	1.91
18275276--18275411	67	2.0	67	87	5	195	24	11	26	38	1.88
18276269--18276295	13	2.1	13	100	0	54	0	55	0	44	0.99
18279471--18279521	2	25.5	2	100	0	102	49	0	0	50	1.00
18285310--18285334	11	2.3	11	100	0	50	28	0	32	40	1.57
18285465--18285615	72	2.1	69	81	3	176	47	11	17	22	1.80
18288531--18288789	133	1.9	133	99	0	509	40	14	9	35	1.78
18293680--18293704	2	12.5	2	100	0	50	0	48	0	52	1.00
18294315--18294439	4	30.8	4	79	9	101	47	16	3	32	1.63
18294359--18294464	6	17.3	6	75	11	81	45	12	4	37	1.63
18294344--18294453	38	2.9	37	80	12	127	46	13	3	36	1.61
18294363--18294469	18	6.2	18	83	14	127	44	11	5	38	1.64
18294371--18294446	14	5.3	14	77	17	75	46	11	3	38	1.59
18294359--18294458	20	5.0	20	78	9	96	46	12	4	38	1.60
18294717--18294742	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18294971--18295000	2	15.0	2	100	0	60	50	0	0	50	1.00
18308225--18308304	28	2.9	28	84	0	115	51	17	2	28	1.58
18322409--18322467	28	2.1	28	84	6	75	20	23	23	32	1.98
18400212--18400260	23	2.1	23	96	0	89	46	18	0	34	1.49
18400213--18400263	11	4.5	11	92	4	84	50	17	0	31	1.46
18403032--18403069	19	2.0	19	94	0	67	42	28	0	28	1.56
18410024--18410061	19	2.0	19	94	0	67	42	28	0	28	1.56
18411126--18411186	30	2.1	28	82	11	70	31	21	0	47	1.51
18412607--18412662	27	2.2	26	84	9	71	14	10	7	67	1.40
18414344--18414378	18	1.9	18	88	0	52	40	8	11	40	1.72
18423011--18423048	19	2.0	19	100	0	76	26	0	31	42	1.56
18424281--18424305	13	1.9	13	100	0	50	44	0	8	48	1.32
18430160--18430204	23	2.0	23	86	0	63	40	8	11	40	1.72
18430304--18430349	15	3.1	15	93	0	74	32	30	6	30	1.83
18435082--18435121	6	6.7	6	100	0	80	32	0	52	15	1.43
18440754--18440786	14	2.4	14	100	0	66	45	6	0	48	1.27
18441105--18441149	19	2.2	21	88	7	67	46	6	0	46	1.29
18441117--18441156	19	2.1	19	85	0	53	47	7	0	45	1.31
18441259--18441311	2	27.0	2	88	11	83	50	0	1	47	1.12
18441249--18441311	13	4.7	13	88	9	83	52	1	1	44	1.20
18442683--18442720	19	2.0	20	85	15	53	73	0	7	18	1.06
18446564--18446638	22	3.4	22	83	0	96	21	10	22	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18446632--18446666	16	2.2	16	89	0	52	31	17	20	31	1.95
18446687--18446736	25	2.0	26	84	4	66	22	8	28	42	1.81
18446775--18446871	38	2.6	38	72	6	90	26	16	19	37	1.93
18448902--18449083	35	5.1	35	82	4	204	45	13	7	33	1.72
18448902--18449090	71	2.7	70	84	4	227	45	13	7	33	1.72
18448902--18449090	36	5.3	35	83	4	227	45	13	7	33	1.72
18452711--18452765	21	2.7	21	88	2	76	38	12	14	34	1.84
18453013--18453063	22	2.3	22	100	0	102	52	13	11	21	1.72
18455908--18455978	36	2.0	36	91	0	115	23	11	38	26	1.89
18458026--18458050	11	2.3	11	100	0	50	72	0	0	28	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97