genome.fa.s9.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  26  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11000234--11000315	41	2.0	41	92	0	137	30	3	26	39	1.74
11003366--11003440	34	2.2	34	83	4	89	33	21	10	34	1.88
11007953--11008087	28	4.8	28	85	0	153	32	14	22	30	1.93
11010962--11010996	2	17.5	2	93	0	61	54	0	45	0	0.99
11048124--11048177	2	27.0	2	92	0	90	46	1	1	50	1.23
11048125--11048192	6	11.3	6	88	0	55	41	1	7	50	1.39
11060119--11060144	13	2.0	13	100	0	52	46	0	7	46	1.31
11067501--11068028	44	11.5	44	80	8	520	31	16	16	35	1.92
11067525--11067990	93	5.0	93	84	5	566	31	16	17	34	1.92
11067501--11068028	137	3.8	137	83	7	587	31	16	16	35	1.92
11069044--11069117	38	1.9	38	88	0	112	62	2	12	22	1.42
11070121--11070353	116	2.0	117	94	1	407	45	14	4	35	1.65
11073332--11073461	40	3.3	40	84	2	165	28	10	25	35	1.89
11079416--11079461	19	2.4	20	82	10	60	54	0	2	43	1.12
11087073--11087108	16	2.2	16	90	0	54	69	8	0	22	1.15
11095714--11095746	16	2.1	16	94	0	57	39	33	0	27	1.57
11102754--11102778	13	1.9	13	100	0	50	52	0	0	48	1.00
11104472--11104618	77	1.9	76	86	8	210	42	13	17	25	1.86
11104550--11104759	112	1.9	112	85	7	293	40	15	19	25	1.91
11106933--11107262	175	1.9	175	91	1	536	13	40	9	35	1.78
11107450--11107501	21	2.4	21	76	20	54	23	1	5	69	1.20
11108093--11108158	33	2.0	33	90	0	105	28	19	12	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11113038--11113085	18	2.7	18	96	0	87	29	29	6	35	1.82
11114253--11114302	2	25.0	2	100	0	100	50	0	0	50	1.00
11121226--11121265	2	20.0	2	100	0	80	50	0	0	50	1.00
11122246--11122298	2	27.0	2	96	3	99	50	0	0	49	1.00
11126621--11126786	74	2.2	75	84	10	209	24	16	15	43	1.87
11133848--11134037	74	2.6	74	81	5	222	22	18	17	41	1.90
11137704--11137739	14	2.6	14	86	0	54	58	11	0	30	1.33
11140106--11140153	21	2.3	20	75	10	51	14	22	4	58	1.54
11144135--11144193	24	2.5	22	81	5	64	42	16	10	30	1.82
11145191--11145217	14	1.9	14	100	0	54	3	37	37	22	1.72
11146315--11146423	31	3.5	31	82	2	121	32	11	13	43	1.79
11146562--11146620	30	2.0	29	83	6	73	37	5	5	52	1.46
11150018--11150049	17	1.9	16	93	6	55	37	3	0	59	1.13
11150439--11150749	157	2.0	158	91	1	509	41	12	17	28	1.86
11151500--11151524	5	5.0	5	100	0	50	60	20	0	20	1.37
11156124--11156159	18	2.0	18	94	0	63	2	11	0	86	0.68
11176408--11176448	21	2.1	19	86	9	55	60	9	0	29	1.28
11182503--11182543	21	2.1	19	86	9	55	60	9	0	29	1.28
11187716--11187771	23	2.4	23	100	0	112	30	44	3	21	1.69
11187766--11187888	43	2.9	43	81	2	122	22	35	14	26	1.93
11192289--11192327	18	2.2	18	90	0	60	76	0	0	23	0.78
11199731--11199853	42	2.9	42	85	0	156	21	19	32	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11201387--11201486	50	2.0	51	92	2	166	19	22	15	44	1.87
11202646--11202672	2	13.5	2	100	0	54	51	48	0	0	1.00
11205202--11205342	73	1.9	74	79	4	160	35	20	24	19	1.96
11211492--11211533	18	2.3	18	83	0	57	14	9	7	69	1.37
11212705--11212772	4	17.0	4	90	0	73	26	8	23	41	1.83
11212699--11212732	12	2.8	12	90	0	50	32	0	17	50	1.47
11212722--11212772	20	2.5	20	100	0	102	25	11	25	37	1.90
11222311--11222370	29	2.1	29	100	0	120	35	6	25	33	1.82
11226271--11226439	44	3.7	44	81	7	169	28	14	12	44	1.82
11235039--11235078	22	1.9	20	85	10	53	27	22	5	45	1.73
11235156--11235217	28	2.1	29	85	5	81	40	19	11	29	1.86
11240428--11240580	76	2.0	76	94	0	270	39	11	11	37	1.78
11247311--11247436	2	63.0	2	81	12	116	46	3	3	45	1.37
11256039--11256098	22	2.8	21	71	14	59	21	10	30	38	1.86
11256085--11256147	23	2.8	22	72	15	65	25	9	31	33	1.88
11256158--11256264	22	4.8	22	78	1	88	22	9	27	41	1.84
11256119--11256250	68	2.0	67	80	7	151	21	8	28	40	1.82
11259330--11259375	20	2.3	20	92	0	74	45	19	4	30	1.70
11261756--11262088	29	11.6	29	84	4	406	38	13	9	39	1.77
11264310--11264492	94	1.9	94	86	0	258	27	16	23	32	1.96
11265208--11265271	22	2.8	23	80	4	76	21	4	31	42	1.74
11272109--11272188	37	2.2	37	95	0	151	30	22	11	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11272168--11272414	68	3.6	68	80	2	264	36	17	9	36	1.82
11278104--11278187	26	3.2	26	74	12	89	32	11	13	42	1.80
11278102--11278187	28	3.1	28	73	6	95	31	11	12	44	1.79
11279072--11279286	113	1.9	110	87	2	313	20	13	27	38	1.91
11279230--11279295	23	2.9	23	74	0	60	19	7	28	43	1.78
11279240--11279307	23	3.0	22	73	4	64	19	7	29	44	1.77
11280286--11280357	12	6.0	12	71	0	63	11	33	16	38	1.84
11280286--11280354	24	2.9	24	82	0	84	11	33	15	39	1.84
11282512--11282804	23	12.7	23	73	4	160	35	9	23	31	1.87
11282512--11282748	46	5.2	46	73	9	178	36	8	23	31	1.85
11282512--11282794	69	4.1	68	80	1	305	35	8	23	32	1.86
11282721--11282826	46	2.3	46	77	3	106	33	11	23	32	1.90
11282764--11282817	23	2.3	23	93	0	90	31	12	25	29	1.93
11282721--11282837	23	5.1	23	78	4	74	31	10	23	34	1.89
11288676--11289113	189	2.3	189	86	0	590	39	26	11	23	1.88
11288684--11289177	189	2.6	189	81	3	582	39	26	11	22	1.88
11290190--11290228	20	2.0	20	84	0	51	35	38	5	20	1.75
11290418--11290479	18	3.3	18	69	13	54	29	19	30	20	1.97
11290424--11290496	38	1.9	38	97	0	137	30	17	31	20	1.96
11290424--11290480	20	3.0	20	66	7	55	31	19	28	21	1.97
11291009--11291040	10	3.2	10	95	0	55	50	6	43	0	1.27
11309561--11309594	17	2.0	17	88	11	52	23	5	26	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11314714--11314786	21	3.5	21	74	7	67	49	5	4	41	1.45
11323420--11323466	25	2.0	23	83	8	58	40	0	10	48	1.38
11325493--11325610	57	2.1	57	95	3	211	29	31	14	24	1.94
11327893--11327960	34	2.0	34	97	0	127	38	16	8	36	1.80
11328132--11328234	52	2.0	52	86	3	145	43	2	11	41	1.56
11328230--11328413	96	1.9	96	94	2	325	42	16	8	32	1.78
11330954--11331029	33	2.2	33	83	4	89	55	6	5	32	1.48
11336825--11336880	25	2.2	26	83	3	78	30	30	1	37	1.68
11350820--11350905	19	4.3	19	64	28	52	56	11	18	12	1.65
11350788--11350912	62	2.0	62	100	0	250	56	12	17	12	1.66
11355926--11355959	6	5.7	6	96	0	59	0	11	52	35	1.38
11357646--11357710	30	2.2	30	100	0	130	27	3	9	60	1.43
11358698--11358750	26	2.0	26	100	0	106	37	11	22	28	1.89
11362053--11362490	180	2.4	180	87	3	614	36	14	14	34	1.87
11363727--11363891	58	2.9	58	87	0	242	34	7	18	39	1.80
11370468--11370539	29	2.5	29	84	2	92	37	27	6	27	1.82
11373965--11374030	2	34.5	2	91	8	111	46	0	0	53	1.00
11392468--11392685	109	2.0	108	97	0	409	30	11	21	36	1.88
11400686--11400799	33	3.5	33	81	1	131	34	19	14	31	1.92
11400686--11400814	33	3.9	32	76	5	98	33	20	15	31	1.93
11403496--11403526	12	2.6	12	100	0	62	64	0	0	35	0.94
11403494--11403535	16	2.6	16	88	0	66	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11405075--11405173	39	2.5	39	91	1	153	30	37	10	22	1.87
11405941--11406023	20	4.3	19	69	15	55	26	22	10	39	1.87
11405937--11405988	20	2.6	19	82	11	61	25	23	11	40	1.88
11410229--11410288	30	2.1	29	81	6	68	31	8	21	38	1.83
11412984--11413024	3	13.7	3	100	0	82	31	0	0	68	0.90
11416696--11416733	19	2.0	19	100	0	76	26	0	31	42	1.56
11416778--11416831	28	2.0	27	88	3	81	29	16	22	31	1.96
11419331--11419376	15	3.0	15	87	3	56	28	2	10	58	1.43
11421651--11421688	19	2.0	19	94	0	67	28	0	28	42	1.56
11421737--11421792	28	2.0	28	82	6	69	28	19	21	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97