genome.fa.s9.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  37  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15216664--15216891	72	3.2	72	72	19	201	52	1	1	43	1.21
15220335--15220414	23	3.5	23	94	0	142	22	32	21	23	1.98
15220447--15220632	55	3.4	55	80	3	176	41	32	12	13	1.82
15221465--15221960	161	3.0	161	80	8	548	26	22	11	39	1.88
15221768--15221799	2	16.0	2	93	0	55	46	0	3	50	1.17
15221609--15221964	173	2.1	173	87	2	509	28	19	10	41	1.85
15222101--15222153	2	28.0	2	82	17	69	50	0	1	47	1.12
15222101--15222153	15	4.0	14	86	13	69	50	0	1	47	1.12
15222100--15222143	17	2.6	17	89	3	72	52	0	2	45	1.13
15222101--15222153	13	4.3	13	86	13	69	50	0	1	47	1.12
15222915--15223056	74	1.9	74	84	2	187	44	7	5	42	1.56
15229051--15229192	42	3.4	42	90	0	212	22	23	30	23	1.99
15230702--15230729	3	9.3	3	100	0	56	0	32	0	67	0.91
15231502--15231631	42	3.1	42	88	0	179	28	19	32	20	1.96
15231696--15231732	2	18.5	2	100	0	74	51	0	0	48	1.00
15241540--15241845	68	4.5	68	84	3	336	35	10	18	35	1.86
15241972--15242046	29	2.5	29	84	6	96	33	21	26	18	1.96
15248949--15249025	35	2.2	35	83	0	91	28	22	16	32	1.96
15249935--15249982	20	2.3	20	82	10	53	20	29	6	43	1.76
15255120--15255328	43	4.9	42	84	4	249	22	16	34	25	1.95
15255120--15255332	86	2.5	85	82	6	275	23	16	34	26	1.95
15258624--15258675	15	3.3	15	71	12	50	55	1	11	30	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15265492--15265516	13	1.9	13	100	0	50	44	0	8	48	1.32
15269771--15269808	19	2.0	19	89	0	58	23	2	34	39	1.69
15273236--15273496	129	2.0	129	90	1	416	24	18	29	27	1.98
15287027--15287054	14	2.0	14	100	0	56	21	14	7	57	1.61
15288090--15288136	21	2.3	20	85	3	58	51	8	0	40	1.33
15291896--15292090	67	2.9	66	82	6	241	25	11	26	35	1.91
15291896--15292044	35	4.5	32	77	12	147	24	12	26	36	1.90
15297588--15297622	17	2.1	17	100	0	70	34	11	8	45	1.71
15298198--15298279	28	2.9	28	83	3	103	28	23	17	31	1.96
15302606--15302652	24	1.9	25	82	4	60	14	23	0	61	1.33
15305039--15305079	2	20.5	2	100	0	82	48	0	0	51	1.00
15313309--15313363	23	2.4	23	100	0	110	34	23	10	30	1.89
15315359--15315417	26	2.2	27	93	3	102	8	15	18	57	1.63
15318238--15318286	25	2.0	25	100	0	98	46	16	16	20	1.83
15318240--15318293	25	2.2	25	93	0	90	48	16	18	16	1.82
15340621--15340727	36	2.9	36	83	4	117	28	9	23	38	1.86
15348002--15348031	11	2.7	11	89	0	51	80	0	20	0	0.72
15350274--15350324	6	9.2	6	89	6	56	35	3	15	45	1.65
15350274--15350318	5	8.2	5	88	11	54	35	4	17	42	1.70
15354759--15354841	42	2.0	41	93	6	141	45	0	4	48	1.23
15354761--15354829	2	34.5	2	85	8	88	46	0	2	49	1.17
15358417--15358470	2	26.5	2	92	3	90	51	1	0	46	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15361159--15362359	400	3.0	401	87	3	1647	40	10	4	45	1.57
15364266--15364312	20	2.3	21	92	3	78	42	6	10	40	1.65
15364452--15364513	30	2.1	30	96	0	115	32	16	11	40	1.83
15371991--15372080	31	3.1	28	72	17	85	34	13	20	32	1.91
15376525--15376643	43	2.8	43	83	2	141	20	36	19	24	1.95
15381561--15381607	21	2.3	21	89	10	71	42	8	10	38	1.70
15383623--15383656	9	3.8	9	84	0	50	41	23	8	26	1.83
15389380--15389544	90	1.8	90	80	8	201	30	14	19	35	1.92
15391170--15391213	22	2.0	22	90	0	70	68	0	27	4	1.09
15403324--15403394	35	2.0	35	88	0	106	26	12	28	32	1.93
15403957--15403999	24	1.9	22	86	13	61	46	16	13	23	1.83
15404825--15404877	20	2.7	20	81	0	70	35	16	18	28	1.93
15409407--15409492	36	2.4	37	82	5	95	26	23	16	33	1.95
15411252--15411298	22	2.1	23	84	11	62	48	17	6	27	1.71
15422167--15422226	24	2.5	26	78	15	74	18	16	5	60	1.54
15422167--15422221	12	4.6	12	80	15	60	16	16	3	63	1.44
15423230--15423432	72	2.8	72	83	4	241	23	19	20	36	1.95
15432692--15432722	2	15.5	2	93	0	53	48	0	3	48	1.17
15432838--15432940	38	2.7	38	87	3	134	19	16	39	24	1.91
15437550--15437747	72	2.7	72	82	5	213	22	17	22	37	1.94
15441174--15441208	11	3.3	11	92	4	54	0	14	0	85	0.59
15441174--15441214	16	2.5	16	92	4	64	0	17	0	82	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15441175--15441208	5	6.6	5	90	6	50	0	14	0	85	0.60
15441203--15441281	30	2.5	30	89	6	113	0	41	7	50	1.31
15441250--15441344	49	2.0	44	84	9	118	0	41	6	52	1.27
15441436--15441469	16	2.2	16	89	5	52	26	0	0	73	0.83
15443897--15444311	43	10.0	43	80	8	432	21	32	19	26	1.97
15443935--15444311	83	4.6	83	90	2	580	21	33	19	25	1.97
15447616--15447652	17	2.1	18	90	5	58	64	10	0	24	1.25
15458815--15458891	29	2.6	30	85	4	102	49	18	6	25	1.71
15459774--15460139	187	2.0	175	87	6	516	41	17	12	28	1.85
15462312--15462357	19	2.6	17	86	6	56	65	4	0	30	1.12
15462320--15462361	17	2.7	16	86	13	61	64	7	0	28	1.20
15471399--15471433	15	2.3	15	90	0	52	34	2	14	48	1.58
15477725--15477784	27	2.3	26	80	8	68	31	31	16	20	1.95
15477742--15477796	27	2.0	27	85	3	74	34	29	14	21	1.93
15478299--15478323	2	12.5	2	100	0	50	52	48	0	0	1.00
15479080--15479146	4	16.5	4	76	11	57	0	34	0	65	0.93
15479074--15479151	17	4.2	18	72	22	72	0	34	0	65	0.93
15479081--15479158	11	6.7	12	70	26	53	0	34	0	65	0.93
15479077--15479143	21	3.1	21	76	19	66	0	34	0	65	0.93
15479094--15479161	22	2.9	24	87	12	97	0	35	0	64	0.94
15482767--15482806	17	2.4	16	87	8	53	62	2	2	32	1.22
15495479--15495590	43	2.6	43	81	7	138	25	16	35	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15495984--15496114	60	2.2	60	87	0	190	23	20	23	32	1.98
15499243--15499286	14	3.1	14	84	15	63	70	0	29	0	0.88
15499250--15499300	19	2.6	20	82	11	61	68	0	31	0	0.90
15499256--15499305	21	2.4	22	80	10	68	70	0	30	0	0.88
15500356--15500385	15	1.9	16	93	6	53	33	13	16	36	1.88
15502705--15502777	35	2.1	35	86	0	101	26	9	34	30	1.88
15502806--15502832	2	13.5	2	100	0	54	48	0	0	51	1.00
15505144--15505209	32	2.1	32	100	0	132	50	13	21	15	1.78
15514072--15514229	80	2.0	81	85	1	219	27	18	21	32	1.97
15514692--15515008	92	3.3	92	64	18	214	43	3	2	50	1.32
15514458--15515140	196	3.5	194	86	5	942	43	3	2	50	1.31
15514856--15514908	26	2.0	26	92	7	90	41	1	3	52	1.30
15514844--15514968	42	2.9	41	84	7	135	44	0	3	51	1.23
15514949--15515028	16	5.1	16	67	19	53	46	0	0	53	1.00
15514949--15515025	36	2.2	36	84	9	97	48	0	0	51	1.00
15514996--15515056	29	2.1	30	84	9	81	44	0	1	54	1.10
15515010--15515125	41	2.8	41	82	10	121	45	2	0	50	1.21
15523655--15523704	22	2.2	23	89	7	75	18	10	26	46	1.80
15524609--15524652	23	1.9	23	86	9	63	50	9	0	40	1.34
15525218--15525245	3	9.3	3	100	0	56	64	0	0	35	0.94
15531009--15531054	15	3.1	15	90	0	74	26	2	15	56	1.50
15539197--15539302	38	2.7	40	83	2	135	23	40	15	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15539419--15539458	2	20.0	2	100	0	80	50	0	0	50	1.00
15543291--15543332	2	21.0	2	100	0	84	50	0	0	50	1.00
15544989--15545072	42	2.1	41	84	6	109	41	17	13	27	1.87
15554526--15554577	19	2.5	22	73	26	58	44	1	3	50	1.31
15554845--15554884	20	2.0	21	90	5	64	40	7	5	47	1.54
15562109--15562154	19	2.4	20	82	10	60	54	0	2	43	1.12
15563972--15563996	13	1.9	13	100	0	50	44	0	8	48	1.32
15566705--15566745	11	3.9	11	87	9	59	48	12	9	29	1.72
15567494--15567582	40	2.2	40	84	7	110	29	10	0	60	1.29
15568161--15568217	25	2.3	25	93	0	96	21	12	14	52	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97