genome.fa.s9.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  85  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33560288--33560443	73	2.1	75	84	4	210	44	8	6	40	1.62
33560303--33560443	74	1.9	73	89	1	219	43	9	5	40	1.62
33561635--33561715	39	2.0	40	92	2	137	38	20	20	19	1.94
33562406--33562446	18	2.3	18	82	0	55	41	34	2	21	1.67
33564281--33564368	42	2.1	42	100	0	176	31	7	14	45	1.74
33566287--33566322	12	3.1	12	92	4	56	25	2	0	72	0.98
33568891--33568926	1	36.0	1	94	0	63	0	2	0	97	0.18
33571147--33571194	15	3.2	15	78	0	60	52	2	10	35	1.48
33571134--33571193	30	2.0	30	90	0	93	48	3	13	35	1.59
33571419--33571474	15	3.3	18	71	21	57	28	0	1	69	0.98
33571417--33571464	6	7.5	6	83	6	51	25	0	2	72	0.95
33571418--33571495	33	2.4	33	89	4	113	28	1	2	67	1.11
33571645--33571688	22	2.0	22	100	0	88	40	4	9	45	1.56
33572149--33572188	5	7.8	5	83	5	53	72	2	0	25	0.97
33574520--33574642	53	2.3	55	82	10	146	58	1	4	35	1.27
33576036--33576088	23	2.2	25	86	6	74	49	1	0	49	1.12
33576036--33576088	12	4.4	12	77	13	56	49	1	0	49	1.12
33586255--33586283	2	14.5	2	100	0	58	51	48	0	0	1.00
33593263--33593324	26	2.4	26	94	0	106	32	40	3	24	1.71
33593373--33593623	82	3.1	82	91	2	405	22	39	17	21	1.93
33595774--33596274	69	7.3	68	75	9	342	31	23	14	30	1.94
33596735--33596778	20	2.1	21	87	4	63	22	4	4	68	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33598832--33598889	29	2.0	29	96	3	100	20	10	27	39	1.85
33608530--33608590	20	3.3	20	66	29	62	47	26	4	19	1.69
33608528--33608594	35	1.9	34	100	0	125	47	25	5	19	1.71
33609369--33609420	18	2.9	18	80	8	54	48	0	1	50	1.12
33620788--33620842	20	2.8	19	86	5	83	10	50	9	29	1.68
33622895--33622985	45	2.0	45	91	0	146	36	14	7	41	1.74
33625008--33625066	28	2.1	28	84	6	75	20	0	16	62	1.32
33628293--33628376	23	3.7	23	71	9	64	22	11	16	48	1.79
33628424--33628473	22	2.2	23	82	10	59	24	0	4	72	1.02
33628925--33628978	24	2.3	24	93	3	92	33	7	20	38	1.80
33633306--33633397	23	4.0	22	72	18	64	21	14	19	44	1.86
33633438--33633471	10	3.3	11	88	12	54	23	0	0	76	0.79
33633441--33633469	13	2.1	14	93	6	51	20	0	0	79	0.74
33636793--33636898	38	2.7	40	85	2	144	20	13	40	25	1.89
33642606--33642651	19	2.3	21	75	14	53	15	23	21	39	1.92
33643567--33643765	40	4.9	40	82	4	186	58	19	1	20	1.47
33643615--33643688	20	3.6	21	69	22	57	59	21	1	17	1.45
33643605--33643663	20	3.0	20	71	24	61	57	18	0	23	1.40
33643567--33643765	81	2.4	81	81	4	231	58	19	1	20	1.47
33643712--33643768	21	2.7	23	71	13	59	59	17	0	22	1.37
33643867--33643899	16	2.1	17	88	11	52	39	0	6	54	1.25
33644407--33644446	17	2.3	18	82	4	55	47	2	5	45	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33651728--33651858	51	2.6	51	89	4	201	32	10	20	35	1.87
33651982--33652179	22	9.0	22	74	2	155	23	11	24	41	1.86
33651992--33652136	66	2.2	66	89	0	227	24	12	22	40	1.89
33652187--33652238	22	2.4	22	87	3	70	44	26	9	19	1.81
33655069--33655097	14	2.0	15	93	6	51	79	0	6	13	0.93
33655100--33655188	20	4.4	20	75	18	69	39	3	0	57	1.15
33655906--33655983	30	2.7	29	82	7	79	50	0	1	48	1.09
33655946--33655984	14	2.8	14	81	11	53	48	0	0	51	1.00
33655906--33655984	28	2.7	29	82	7	90	49	0	1	49	1.09
33655948--33655996	22	2.3	21	83	13	64	44	0	2	53	1.12
33656589--33656702	45	2.5	45	88	0	165	35	15	14	34	1.89
33656681--33656786	53	2.0	54	83	3	133	42	16	8	32	1.79
33657178--33657223	23	2.0	23	91	0	74	52	13	26	8	1.69
33657255--33657325	35	2.0	35	100	0	142	49	5	25	19	1.70
33658263--33658304	2	21.0	2	100	0	84	50	0	0	50	1.00
33665583--33665632	19	2.6	19	75	12	57	12	36	8	44	1.71
33666422--33666468	2	23.5	2	100	0	94	48	0	0	51	1.00
33666585--33666687	38	2.6	40	87	3	138	23	17	36	22	1.94
33685275--33685309	2	18.0	2	94	5	63	0	0	48	51	1.00
33693413--33693469	12	4.8	12	72	8	53	47	0	3	49	1.18
33693424--33693469	23	2.0	24	86	4	67	47	0	4	47	1.21
33695169--33695255	20	4.5	19	75	16	63	66	9	1	22	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33695374--33695405	2	16.0	2	93	0	55	50	3	0	46	1.17
33697319--33697352	15	2.3	15	90	10	52	20	2	5	70	1.21
33700429--33700592	43	3.8	43	85	0	202	32	20	14	32	1.92
33700722--33700762	17	2.4	18	80	12	50	68	2	9	19	1.29
33701288--33701647	186	1.9	187	85	1	490	38	11	12	37	1.79
33702223--33702342	61	2.0	61	91	0	195	46	10	8	34	1.69
33710681--33710748	21	3.2	21	93	0	109	38	23	13	25	1.91
33712669--33712715	15	3.1	15	87	0	58	36	2	25	36	1.68
33712677--33712715	3	13.0	3	83	0	51	35	2	28	33	1.71
33713677--33713744	21	3.2	21	83	8	84	33	19	19	27	1.96
33715686--33715774	3	29.7	3	90	0	142	35	2	29	32	1.70
33722474--33722518	21	2.2	20	88	4	63	28	0	6	64	1.19
33729626--33729690	27	2.4	27	76	2	69	30	21	26	21	1.98
33730514--33730611	27	3.7	27	81	1	117	31	23	26	18	1.97
33730625--33730712	27	3.3	27	79	3	70	31	20	27	20	1.97
33730635--33730776	27	5.3	27	73	7	101	29	22	31	16	1.96
33743425--33743481	15	3.7	15	90	2	78	40	7	17	35	1.77
33747981--33748029	23	2.1	23	100	0	98	53	16	18	12	1.73
33749898--33750126	118	1.9	119	90	2	363	39	13	7	38	1.74
33749914--33750154	118	2.0	118	85	7	319	40	12	7	39	1.71
33753205--33753237	17	1.9	17	88	11	50	42	12	3	42	1.57
33753389--33753517	30	4.4	29	81	11	156	39	10	10	39	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33753389--33753517	59	2.2	58	87	4	197	39	10	10	39	1.74
33757570--33757605	13	2.8	12	84	15	54	80	2	16	0	0.83
33757572--33757611	14	2.9	13	82	10	53	77	2	17	2	0.99
33759220--33759268	16	3.0	16	82	8	55	75	0	4	20	0.96
33759216--33759273	26	2.1	30	87	12	88	75	0	5	18	0.98
33759216--33759254	13	3.1	12	79	13	51	79	0	5	15	0.90
33768028--33768628	62	9.9	62	85	4	812	32	11	20	36	1.88
33768028--33768632	122	5.0	121	88	4	867	32	11	20	36	1.88
33768028--33768632	184	3.3	183	86	5	857	32	11	20	36	1.88
33768579--33768716	51	2.7	51	77	0	150	32	15	20	31	1.93
33768826--33768875	17	2.9	17	82	11	66	68	0	2	30	1.01
33769453--33769499	24	1.9	25	86	4	69	78	0	19	2	0.85
33769862--33769911	16	3.1	16	78	18	50	72	0	8	20	1.10
33771808--33772341	265	2.0	266	89	1	813	33	10	14	41	1.80
33772678--33772721	2	22.0	2	100	0	88	50	0	0	50	1.00
33779259--33779294	2	18.0	2	88	11	56	50	2	0	47	1.15
33781745--33782190	240	1.9	241	82	2	565	37	12	15	34	1.86
33785039--33785203	82	2.0	82	97	0	312	33	17	20	28	1.95
33788943--33789065	47	2.6	47	94	1	212	52	13	19	13	1.74
33801330--33801505	87	2.0	87	91	0	280	33	17	9	39	1.83
33802063--33802105	21	2.0	21	100	0	86	27	18	18	34	1.95
33802289--33802319	15	2.1	15	94	5	55	51	3	0	45	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33802333--33802375	21	2.0	22	82	13	54	48	0	6	44	1.29
33802412--33802480	22	2.9	22	78	16	75	50	0	0	49	1.00
33802413--33802487	26	3.0	24	76	14	73	49	0	0	50	1.00
33802346--33802478	17	7.8	17	68	18	64	53	0	2	44	1.13
33812006--33812063	27	2.2	26	84	3	71	65	15	8	10	1.46
33825656--33825713	8	6.5	8	78	18	53	20	1	0	77	0.86
33825656--33825748	27	3.3	26	72	18	71	22	4	0	73	1.01
33825669--33825734	30	2.1	32	86	8	91	22	4	0	72	1.02
33825663--33825749	38	2.3	38	80	13	90	22	4	0	72	1.03
33839947--33840550	34	17.5	33	78	10	466	27	36	13	21	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97