genome.fa.s9.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  32  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13428270--13428329	28	2.1	30	84	6	79	31	6	21	40	1.79
13443270--13443365	34	2.8	33	73	6	93	21	21	15	40	1.91
13445327--13445365	20	2.0	20	94	0	69	30	28	7	33	1.85
13454826--13454869	23	1.9	23	85	0	61	40	0	0	59	0.98
13462044--13462195	18	7.7	19	66	21	64	34	0	1	63	1.05
13464541--13464750	45	4.7	45	85	2	262	35	21	19	23	1.96
13464532--13464750	90	2.4	90	89	0	321	35	21	19	23	1.96
13464723--13464768	24	1.9	24	91	8	76	45	15	15	23	1.84
13464681--13464819	69	2.0	69	87	0	197	37	17	17	26	1.93
13464747--13464841	45	2.1	45	90	0	145	31	17	20	30	1.96
13464825--13464932	26	4.0	27	73	18	100	40	14	16	27	1.88
13464781--13464943	80	2.1	76	82	5	193	37	15	17	30	1.90
13469463--13470097	318	2.0	317	85	2	862	33	10	23	31	1.90
13470974--13471027	27	2.0	27	85	0	72	42	9	12	35	1.75
13471452--13471525	24	3.1	24	94	3	123	17	4	32	45	1.67
13471712--13471750	9	4.4	9	83	6	53	35	0	20	43	1.52
13471938--13471989	23	2.3	23	100	0	104	40	17	21	21	1.91
13473003--13473428	66	6.6	63	80	4	404	31	19	16	33	1.94
13474646--13474750	52	2.0	52	94	0	183	30	8	22	38	1.84
13476919--13476952	15	2.1	15	89	10	50	73	0	2	23	0.97
13478012--13478044	16	1.9	18	88	11	52	18	15	6	60	1.54
13509836--13509860	2	12.5	2	100	0	50	0	52	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13514537--13514587	25	2.0	25	92	0	84	31	0	11	56	1.35
13515338--13515409	29	2.6	29	84	4	85	34	12	12	40	1.81
13515335--13515455	31	4.3	27	76	16	104	32	14	15	38	1.87
13515348--13515438	31	3.0	31	85	4	116	29	14	13	42	1.83
13515348--13515438	29	3.1	29	82	6	110	29	14	13	42	1.83
13515348--13515481	26	4.9	26	73	11	76	30	14	15	39	1.87
13515447--13515551	55	1.9	55	90	3	167	31	10	15	42	1.80
13515449--13515565	55	2.1	55	84	3	146	32	11	15	40	1.84
13515578--13515629	24	2.2	24	85	0	68	17	15	25	42	1.88
13515850--13515898	20	2.5	20	78	18	57	40	0	10	48	1.37
13519460--13519695	111	2.1	110	81	7	273	30	11	15	42	1.83
13521538--13521640	38	2.6	39	79	11	113	22	16	38	22	1.92
13522695--13522875	88	2.1	88	96	0	335	30	8	20	39	1.83
13527071--13527096	2	13.0	2	100	0	52	50	50	0	0	1.00
13533593--13533624	17	1.9	17	93	6	57	43	0	0	56	0.99
13539278--13539308	2	15.5	2	100	0	62	51	0	0	48	1.00
13539427--13539457	2	15.5	2	100	0	62	51	0	0	48	1.00
13539278--13539574	149	2.0	148	99	0	576	52	4	9	34	1.53
13542358--13542385	3	9.3	3	100	0	56	67	0	0	32	0.91
13544272--13544305	17	2.1	17	94	5	61	55	0	11	32	1.36
13546380--13546405	7	3.7	7	100	0	52	26	11	30	30	1.92
13562655--13562694	19	2.0	20	95	4	73	30	0	27	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13569752--13570218	233	2.0	233	97	0	880	36	13	15	34	1.86
13571627--13571657	16	1.9	16	100	0	62	54	6	6	32	1.51
13579574--13579615	3	14.0	3	100	0	84	33	33	0	33	1.58
13581842--13581874	2	16.5	2	93	0	57	45	0	0	54	0.99
13593768--13594233	235	2.0	232	85	3	632	33	19	16	30	1.94
13602366--13602480	33	3.4	33	74	12	117	37	25	13	24	1.91
13607013--13607065	18	3.1	18	74	15	58	69	3	11	15	1.31
13607000--13607065	35	1.9	34	82	14	82	66	3	13	16	1.37
13607234--13607719	50	9.6	50	81	6	521	43	21	8	26	1.80
13607234--13607949	204	3.4	203	78	10	717	43	21	8	27	1.81
13607700--13607736	17	2.2	17	90	0	56	56	5	8	29	1.51
13607649--13607791	68	2.1	67	88	2	216	47	18	6	27	1.74
13607717--13607949	50	4.5	50	82	10	279	43	20	9	27	1.82
13607597--13607830	118	2.0	120	88	3	357	44	20	7	26	1.78
13607717--13607949	51	4.4	54	81	11	256	43	20	9	27	1.82
13607744--13607941	108	1.8	108	90	2	317	41	20	9	27	1.83
13608749--13608786	14	2.7	14	84	8	51	7	10	2	78	1.04
13619844--13620025	73	2.5	73	83	5	217	19	20	18	41	1.91
13621068--13621108	20	2.0	20	95	0	73	24	0	41	34	1.55
13621460--13621505	24	2.0	23	88	12	69	41	4	26	28	1.74
13621645--13621772	34	3.7	34	83	4	159	29	13	23	33	1.93
13621889--13621936	22	2.2	22	96	0	87	35	12	43	8	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13622011--13622074	25	2.6	25	85	5	85	51	10	20	17	1.75
13640915--13640967	2	27.5	2	85	14	76	50	0	1	47	1.12
13640915--13640967	17	3.4	16	85	15	76	50	0	1	47	1.12
13640915--13640973	23	2.8	20	80	14	66	49	0	1	49	1.11
13642647--13642686	18	2.2	19	86	4	55	70	0	10	20	1.16
13642647--13642693	23	2.1	22	88	4	67	70	0	10	19	1.16
13643401--13643432	11	2.8	12	90	9	50	71	6	21	0	1.07
13646146--13646179	17	1.9	18	88	5	52	35	14	11	38	1.83
13654842--13654894	27	1.9	28	85	11	74	49	3	20	26	1.66
13659280--13659360	30	2.7	30	81	11	87	61	4	9	23	1.46
13668235--13668278	3	14.7	3	90	0	70	31	0	4	63	1.14
13678918--13679064	72	2.0	73	92	5	244	27	24	10	37	1.88
13683397--13683429	10	3.3	10	91	0	57	42	0	21	36	1.53
13685588--13685630	18	2.3	18	84	8	50	60	0	4	34	1.17
13685604--13685655	16	3.1	18	75	10	56	59	3	0	36	1.16
13686567--13686591	13	1.9	13	100	0	50	48	8	0	44	1.32
13695578--13695603	2	13.0	2	100	0	52	50	0	0	50	1.00
13697932--13697985	28	2.0	27	85	3	72	64	1	0	33	1.04
13706530--13706710	73	2.5	73	85	5	224	23	18	16	41	1.89
13712278--13712319	21	2.0	21	90	0	66	23	28	14	33	1.94
13716171--13716268	48	2.0	48	92	0	160	36	17	12	33	1.87
13724370--13724465	10	8.9	10	68	26	54	21	1	25	52	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13724370--13724477	22	5.0	22	93	2	175	23	0	25	50	1.55
13724389--13724471	13	7.3	13	68	29	64	22	1	26	49	1.57
13725182--13725282	34	2.9	35	74	18	102	32	10	22	33	1.89
13737243--13737293	25	2.0	25	84	3	66	60	17	5	15	1.54
13737759--13737889	68	1.9	67	86	4	183	38	15	8	37	1.77
13738230--13738273	15	3.1	14	80	6	52	40	2	13	43	1.57
13750210--13750234	13	1.9	13	100	0	50	48	8	0	44	1.32
13754852--13754895	20	2.2	20	84	12	54	50	11	4	34	1.59
13758605--13758644	17	2.4	17	86	0	53	32	12	10	45	1.75
13758827--13758891	33	2.0	33	84	3	87	40	6	4	49	1.48
13760724--13760764	21	2.0	20	90	4	64	51	0	0	48	1.00
13771890--13771941	28	1.9	27	84	7	70	26	21	21	30	1.98
13771987--13772032	20	2.3	20	92	0	74	43	21	6	28	1.77
13774427--13774590	85	1.9	85	92	0	274	30	10	18	40	1.84
13776278--13776332	27	2.0	27	100	0	110	43	0	3	52	1.18
13778115--13778153	8	4.9	8	96	0	69	28	10	35	25	1.89
13793273--13793333	22	2.8	22	94	0	104	31	13	44	11	1.79
13793964--13793989	11	2.4	11	100	0	52	80	0	0	19	0.71
13794288--13794337	26	1.9	26	84	8	66	66	0	30	4	1.10
13794510--13794603	34	2.8	34	80	1	118	30	12	21	35	1.91
13794573--13794624	24	2.3	23	83	9	70	30	9	25	34	1.88
13794601--13794690	47	1.9	47	90	0	144	35	12	22	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13794645--13794713	35	2.0	35	83	13	90	30	15	21	31	1.95
13794794--13794863	22	3.2	22	87	0	95	40	8	38	12	1.74
13794815--13794871	22	2.7	21	87	12	82	35	10	42	12	1.77
13794880--13794947	17	3.7	17	71	22	57	76	1	19	2	0.99
13794950--13795033	25	3.4	25	88	3	116	45	14	25	15	1.84
13809780--13809808	10	2.9	10	100	0	58	37	20	0	41	1.53
13815460--13815517	19	3.0	19	85	5	80	43	25	1	29	1.65
13815461--13815525	20	3.3	20	89	2	96	44	23	3	29	1.68
13826362--13826532	87	2.0	84	87	4	227	35	8	11	44	1.72
13831862--13831904	21	2.0	21	83	16	54	27	4	2	65	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97