genome.fa.s9.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  56  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22440488--22440624	55	2.5	52	88	8	195	40	0	2	56	1.11
22447691--22447721	15	2.1	15	94	5	55	77	0	0	22	0.77
22449552--22449582	15	2.1	15	93	0	53	77	6	16	0	0.97
22458947--22459043	2	48.0	2	79	8	90	42	3	3	50	1.33
22461461--22461597	47	2.9	47	96	1	249	32	33	16	18	1.93
22471531--22471575	23	2.0	22	82	4	54	55	0	0	44	0.99
22472914--22472941	2	14.0	2	100	0	56	50	0	0	50	1.00
22473579--22473616	19	2.0	19	94	0	67	42	18	18	21	1.90
22481824--22481880	27	2.2	26	87	6	80	42	0	7	50	1.29
22481861--22481904	21	2.0	22	82	4	54	36	2	6	54	1.40
22481952--22481999	23	2.1	23	84	0	60	47	0	2	50	1.12
22481967--22482029	33	2.0	31	84	12	83	44	0	1	53	1.10
22481983--22482053	24	2.8	26	81	14	78	45	0	0	54	0.99
22481986--22482058	25	3.0	24	74	20	78	42	0	0	57	0.98
22482018--22482062	19	2.4	18	82	13	56	46	0	0	53	1.00
22485404--22485428	13	1.9	13	100	0	50	52	0	0	48	1.00
22488028--22488133	36	2.9	36	80	6	115	28	26	16	29	1.96
22488659--22488797	63	2.2	63	78	11	149	26	14	13	45	1.82
22493944--22494122	78	2.3	79	80	8	188	36	7	13	42	1.72
22495884--22495916	2	16.5	2	100	0	66	51	48	0	0	1.00
22501494--22501581	20	4.7	20	83	13	132	34	9	20	36	1.84
22501546--22501577	15	2.1	15	94	0	55	34	3	25	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22512422--22512504	33	2.5	32	84	7	103	27	6	2	63	1.30
22518028--22518072	22	2.0	22	82	4	54	22	31	0	46	1.52
22521897--22521957	2	30.5	2	93	0	104	54	0	45	0	1.00
22522564--22522730	35	4.7	36	86	6	225	20	13	37	27	1.91
22522564--22522730	71	2.4	71	95	0	298	20	13	37	27	1.91
22522844--22522886	22	2.0	22	90	0	68	32	9	20	37	1.85
22524228--22524394	70	2.3	70	85	7	221	22	19	17	40	1.91
22529941--22529979	17	2.3	17	90	0	60	30	10	38	20	1.86
22535058--22535098	21	2.0	21	90	0	64	39	24	7	29	1.82
22535121--22535209	45	2.0	44	82	6	108	49	12	10	28	1.72
22535140--22535229	45	2.0	45	82	8	112	48	12	8	30	1.71
22538271--22538306	2	18.0	2	100	0	72	50	0	0	50	1.00
22539389--22539458	4	17.2	4	77	5	70	67	4	1	27	1.18
22539562--22539602	19	2.0	21	90	9	68	65	12	0	21	1.25
22540128--22540160	15	2.3	15	89	5	50	57	6	12	24	1.57
22540947--22540979	10	3.3	10	100	0	66	60	12	0	27	1.32
22541028--22541194	42	4.0	42	85	0	199	20	31	22	25	1.98
22541239--22541273	2	17.5	2	100	0	70	48	0	0	51	1.00
22543630--22543732	38	2.6	40	81	3	120	20	13	40	25	1.89
22551421--22551454	2	17.0	2	100	0	68	50	0	0	50	1.00
22551572--22551677	38	2.7	40	85	2	135	21	15	38	24	1.92
22558901--22559021	57	2.1	56	93	3	206	28	4	15	49	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22558918--22559038	57	2.1	57	83	6	138	33	4	16	44	1.67
22561657--22561687	2	15.5	2	100	0	62	48	0	0	51	1.00
22568227--22568264	16	2.5	15	87	8	58	15	2	13	68	1.32
22571731--22571789	29	2.0	29	90	0	91	28	28	16	25	1.97
22574758--22574799	20	2.2	19	87	8	59	42	16	19	21	1.89
22577071--22577123	22	2.5	22	81	9	56	16	32	1	49	1.57
22577781--22577916	43	3.2	43	82	4	175	24	16	34	25	1.95
22577809--22577951	43	3.3	42	75	14	137	25	15	34	24	1.94
22582342--22582472	36	3.8	35	74	14	121	27	37	13	21	1.91
22595418--22595466	2	24.5	2	91	8	82	51	2	0	46	1.12
22595489--22595520	1	32.0	1	100	0	64	100	0	0	0	0.00
22595546--22595584	2	19.5	2	100	0	78	51	0	0	48	1.00
22598389--22598515	54	2.3	53	78	5	146	37	9	16	37	1.81
22598714--22598801	33	2.7	32	89	7	133	30	26	15	27	1.96
22603547--22603597	6	8.3	6	82	10	50	80	0	0	19	0.71
22603550--22603600	9	5.7	9	81	6	50	80	0	0	19	0.71
22613311--22613492	92	2.0	92	94	0	319	24	23	21	30	1.99
22613668--22613838	43	3.9	43	80	6	184	25	33	16	24	1.95
22613674--22613838	86	1.9	88	89	3	262	25	34	16	23	1.95
22615486--22615604	61	2.0	61	86	0	166	36	13	15	34	1.86
22616329--22616357	11	2.6	11	100	0	58	55	10	34	0	1.34
22619252--22619353	36	2.9	36	79	15	113	26	29	22	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22619333--22619411	35	2.3	35	84	4	97	25	22	22	29	1.99
22625320--22625578	68	3.8	68	83	4	279	34	15	11	38	1.83
22626649--22626717	33	2.1	33	94	0	120	33	13	13	40	1.82
22629820--22629859	20	2.0	21	90	5	64	22	2	5	70	1.19
22629821--22629868	25	1.9	25	83	8	62	22	2	6	68	1.23
22630190--22630229	20	2.0	21	85	5	55	35	7	27	30	1.84
22631842--22632043	28	7.0	28	85	7	233	41	9	11	37	1.74
22631842--22632043	57	3.5	56	82	8	233	41	9	11	37	1.74
22635038--22635065	7	4.0	7	100	0	56	28	28	0	42	1.56
22637096--22637177	23	3.4	24	77	14	62	67	10	7	14	1.42
22645617--22645672	25	2.2	25	84	6	69	14	30	14	41	1.85
22645680--22645715	2	18.0	2	88	0	54	47	0	5	47	1.25
22645716--22645766	5	10.2	5	95	0	93	0	21	0	78	0.75
22645716--22645773	15	3.9	15	90	2	91	0	22	0	77	0.77
22645942--22646024	33	2.4	34	74	7	89	36	31	8	24	1.85
22646269--22646309	19	2.2	19	86	8	57	0	17	7	75	1.02
22650303--22650342	5	8.0	5	91	0	62	37	22	0	40	1.54
22650387--22650428	15	2.8	15	88	0	66	57	11	2	28	1.47
22651818--22651842	13	1.9	13	100	0	50	48	8	0	44	1.32
22657530--22657565	11	3.3	11	88	0	54	0	13	0	86	0.58
22657731--22657815	33	2.5	34	81	7	102	32	28	11	27	1.92
22657822--22657903	35	2.3	35	78	0	92	47	26	6	19	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22658057--22658097	19	2.2	19	86	8	57	0	17	7	75	1.02
22661150--22661287	39	3.6	39	81	4	149	25	35	13	26	1.92
22662167--22662212	20	2.3	21	85	11	69	71	0	28	0	0.86
22662656--22662694	19	2.1	19	90	4	62	48	2	0	48	1.15
22666531--22666594	33	1.9	33	87	0	92	23	21	29	25	1.99
22673222--22673316	39	2.4	39	87	1	127	35	23	18	22	1.96
22678447--22678496	19	2.6	19	75	12	57	44	6	38	12	1.66
22684153--22684223	35	2.0	35	83	5	90	30	23	12	32	1.92
22690161--22690205	24	1.9	23	86	4	63	68	4	2	24	1.19
22697684--22697721	2	19.0	2	100	0	76	50	0	0	50	1.00
22698190--22698229	18	2.2	18	86	8	55	45	2	0	52	1.14
22710200--22710233	11	3.2	11	95	4	61	26	32	8	32	1.87
22712193--22712315	42	2.9	43	85	1	151	21	31	17	28	1.97
22716915--22716990	22	3.5	22	81	0	80	25	22	27	25	2.00
22718110--22718236	30	4.4	28	75	11	114	43	11	6	38	1.67
22718110--22718236	59	2.2	57	84	6	168	43	11	6	38	1.67
22718110--22718236	28	4.4	30	72	17	108	43	11	6	38	1.67
22718136--22718236	28	3.6	27	78	12	114	41	10	6	40	1.67
22721847--22721949	38	2.6	40	84	3	129	23	16	37	22	1.93
22728523--22728568	20	2.3	20	96	0	83	28	4	21	45	1.71
22742118--22742177	30	2.1	29	81	6	68	31	8	21	38	1.83
22747798--22747850	28	1.9	27	88	3	79	28	22	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22747895--22747940	20	2.3	20	88	7	67	45	17	4	32	1.68
22748808--22748832	3	8.3	3	100	0	50	68	0	0	32	0.90
22749429--22749500	33	2.2	33	87	5	110	48	9	4	37	1.55
22750734--22750907	59	3.0	57	82	5	197	35	13	10	40	1.78
22750734--22750904	29	5.9	28	79	7	171	36	13	9	40	1.78
22756293--22756319	14	1.9	14	100	0	54	59	11	0	29	1.32
22757775--22757829	2	29.5	2	85	14	82	50	0	0	49	1.00
22757775--22757829	25	2.2	26	93	6	96	50	0	0	49	1.00
22759345--22759476	36	3.7	35	79	8	133	29	16	20	33	1.95
22762477--22762603	43	3.0	42	89	2	182	22	17	35	24	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97