genome.fa.s9.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  91  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35980690--35980768	30	2.7	29	80	7	90	27	0	3	68	1.07
35984001--35984055	26	2.1	27	89	3	85	40	14	14	30	1.86
35984157--35984402	102	2.4	101	83	2	296	43	13	20	22	1.87
35985679--35985748	29	2.4	29	90	0	113	45	10	25	18	1.80
35986000--35986152	35	4.4	35	86	0	207	18	18	17	44	1.87
35987886--35987921	2	19.0	2	88	11	58	50	0	0	50	1.00
35989306--35989387	24	3.4	24	87	0	101	40	20	14	24	1.90
35989359--35989478	45	2.7	45	82	0	159	35	20	17	25	1.95
35989400--35989547	69	2.1	69	86	0	206	35	19	17	27	1.94
35989445--35989495	24	2.1	24	92	0	84	41	17	11	29	1.85
35989469--35989612	45	3.2	45	87	7	213	31	17	20	29	1.96
35989331--35989590	114	2.3	113	87	1	358	35	19	18	27	1.95
35989593--35989632	21	2.0	21	90	5	64	22	17	27	32	1.96
35989624--35989679	24	2.3	24	84	0	67	37	21	14	26	1.92
35989559--35989751	90	2.2	89	85	0	251	33	19	17	29	1.95
35989648--35989902	66	3.8	66	77	3	222	32	16	18	32	1.93
35989607--35989931	135	2.4	135	82	1	391	34	17	17	30	1.94
35989759--35989809	24	2.1	24	92	0	84	41	13	11	33	1.81
35989767--35989821	24	2.3	24	83	0	65	40	14	14	30	1.86
35989811--35989863	21	2.5	21	73	11	54	26	15	18	39	1.90
35989842--35989946	45	2.3	45	90	0	165	31	18	20	29	1.96
35994172--35994245	22	3.2	22	66	23	62	16	24	16	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35994169--35994264	47	2.0	47	95	0	174	16	27	13	42	1.86
35997036--35997084	2	26.0	2	82	12	50	48	0	0	51	1.00
35997041--35997080	21	1.9	21	85	10	55	50	0	0	50	1.00
35997791--35998066	139	2.0	139	89	0	426	23	24	20	31	1.98
35998564--35998590	2	13.5	2	100	0	54	51	48	0	0	1.00
36000341--36000492	72	2.1	72	100	0	304	33	13	11	42	1.79
36007059--36007137	22	3.6	22	81	5	81	20	12	24	43	1.86
36007141--36007215	23	3.3	23	90	0	114	33	25	10	30	1.90
36007259--36007301	22	2.0	22	85	0	59	41	16	13	27	1.86
36013057--36013132	37	2.1	37	82	0	89	38	5	11	44	1.64
36018744--36018775	1	32.0	1	93	0	55	0	3	96	0	0.20
36018790--36018838	2	26.0	2	88	12	77	51	0	0	48	1.00
36018790--36018838	11	4.5	11	92	2	82	51	0	0	48	1.00
36019839--36019865	2	13.5	2	100	0	54	51	48	0	0	1.00
36020228--36020337	24	4.7	24	70	6	91	40	17	14	28	1.89
36020226--36020459	69	3.4	68	78	11	264	35	16	18	29	1.93
36020343--36020389	21	2.2	21	96	0	85	23	12	25	38	1.90
36020311--36020434	66	1.9	66	89	0	194	30	16	20	32	1.95
36020360--36020608	45	5.5	46	72	12	196	34	16	18	30	1.93
36020467--36020522	24	2.3	24	87	0	76	42	19	10	26	1.84
36020481--36020528	24	2.0	24	95	0	87	41	16	14	27	1.87
36020421--36020608	69	2.8	66	83	4	216	35	17	17	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36020242--36020608	180	2.0	180	88	1	538	34	16	18	30	1.93
36020519--36020570	21	2.5	21	93	0	86	25	15	25	34	1.95
36020411--36020691	66	4.2	65	80	9	271	32	16	20	30	1.94
36020281--36020594	90	3.5	89	71	8	276	34	16	18	30	1.93
36034003--36034362	187	1.9	186	99	0	711	44	9	12	32	1.75
36044490--36044566	15	5.1	15	76	4	66	50	2	5	41	1.38
36044640--36044690	23	2.3	23	86	6	70	47	0	7	45	1.32
36044791--36044852	16	4.3	15	75	17	51	33	4	0	61	1.17
36044849--36044941	7	13.7	7	71	6	66	25	1	0	73	0.90
36044844--36044932	34	2.6	34	92	0	142	26	1	0	71	0.92
36044886--36044942	20	2.9	19	77	15	62	28	0	0	71	0.86
36044848--36044941	27	3.5	26	77	11	91	26	1	0	72	0.92
36048171--36048207	2	19.0	2	94	5	67	0	51	0	48	1.00
36048172--36048205	17	2.0	17	100	0	68	0	52	0	47	1.00
36051209--36051278	35	2.0	35	83	8	90	35	21	11	31	1.89
36058580--36058734	24	6.5	24	76	1	150	29	20	32	18	1.96
36058694--36058765	27	2.8	27	83	6	78	27	18	33	20	1.96
36058716--36058896	54	3.4	54	84	3	213	22	14	35	28	1.93
36058745--36058896	27	5.6	27	90	1	207	20	13	35	30	1.91
36061867--36061911	16	2.8	16	83	6	56	53	0	0	46	1.00
36061868--36061947	27	3.0	26	80	12	83	50	2	0	47	1.14
36064023--36064056	15	2.2	16	89	5	52	38	0	2	58	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36067432--36067655	117	1.9	117	91	1	369	29	7	25	37	1.83
36068250--36068384	68	2.0	68	91	2	218	21	14	17	45	1.84
36070228--36070831	306	2.0	306	85	1	809	23	23	25	27	2.00
36071431--36071465	16	2.2	16	89	0	52	11	2	5	80	1.00
36077130--36077184	26	2.1	26	93	0	92	40	10	14	34	1.81
36091275--36091323	24	2.0	24	84	0	62	20	14	26	38	1.91
36091299--36091464	45	3.7	45	82	4	183	26	21	19	32	1.97
36091425--36091596	24	7.4	24	68	12	117	21	19	23	35	1.96
36091275--36091576	159	1.9	159	87	0	442	24	20	20	33	1.97
36091449--36091576	45	2.8	45	91	0	193	23	21	21	32	1.98
36092103--36092164	22	2.9	21	77	13	65	6	8	3	82	0.94
36093281--36093339	21	2.8	21	81	0	55	40	13	6	38	1.71
36093488--36093641	30	5.3	30	73	10	124	41	11	9	37	1.73
36093551--36093641	30	3.1	30	85	1	130	42	9	9	37	1.71
36096066--36096177	24	4.7	24	67	4	73	19	20	19	40	1.92
36103232--36103256	2	12.5	2	100	0	50	0	52	0	48	1.00
36116692--36116720	3	9.7	3	100	0	58	31	0	0	68	0.89
36118450--36118600	15	10.1	15	69	16	73	64	0	3	31	1.12
36118466--36118527	5	12.2	5	73	10	54	70	0	1	27	0.96
36118466--36118527	31	2.0	29	90	9	97	70	0	1	27	0.96
36118553--36118629	34	2.3	34	88	4	111	63	0	1	35	1.03
36118858--36118898	15	2.7	15	84	0	55	41	12	0	46	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36130394--36130458	31	2.1	33	83	13	84	33	1	1	63	1.13
36132250--36132276	3	9.0	3	100	0	54	33	0	0	66	0.92
36135731--36135807	2	38.5	2	93	5	129	46	1	0	50	1.09
36159281--36159351	37	1.9	37	94	0	124	25	23	9	40	1.85
36167459--36167491	16	2.0	17	94	5	59	0	24	0	75	0.80
36169721--36169798	26	3.1	24	80	9	84	70	0	1	28	0.95
36169726--36169800	20	3.9	18	74	10	51	70	0	1	28	0.95
36171423--36171451	13	2.2	13	100	0	58	44	0	0	55	0.99
36174715--36174875	35	4.6	35	74	3	126	27	10	13	49	1.74
36174761--36174921	70	2.3	69	79	4	171	27	13	12	45	1.80
36175382--36175434	21	2.7	20	70	5	54	41	0	3	54	1.18
36184246--36184277	16	2.0	16	100	0	64	37	18	25	18	1.94
36187842--36187869	12	2.3	12	100	0	56	92	0	7	0	0.37
36197145--36197192	23	2.1	23	100	0	96	20	22	25	31	1.98
36203229--36203357	67	1.9	66	83	7	163	31	24	4	38	1.76
36203787--36203841	28	1.9	29	82	10	69	16	12	5	65	1.43
36211307--36211424	27	4.4	27	78	2	105	21	23	22	32	1.98
36218598--36218648	11	4.7	11	81	9	52	1	19	0	78	0.85
36221465--36221498	18	2.0	17	88	11	52	26	23	11	38	1.89
36223345--36223369	13	1.9	13	100	0	50	12	0	0	88	0.53
36225819--36225923	47	2.2	47	93	0	174	18	20	17	44	1.87
36226979--36227051	15	5.1	14	75	20	62	53	0	1	45	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36227587--36227642	24	2.2	24	81	6	67	44	5	5	44	1.49
36244240--36244321	2	41.5	2	85	11	116	48	1	1	47	1.17
36255876--36255928	21	2.5	20	72	19	54	50	0	1	47	1.12
36258853--36258897	2	22.5	2	100	0	90	51	0	0	48	1.00
36263373--36263399	2	13.5	2	100	0	54	51	0	48	0	1.00
36285731--36285785	15	3.7	15	87	0	74	36	20	3	40	1.70
36297292--36297331	21	2.0	20	85	14	55	47	5	7	40	1.54
36306093--36306144	20	2.8	20	77	8	56	48	0	3	48	1.20
36306967--36307015	15	3.3	14	78	21	55	59	2	0	38	1.09
36306971--36307036	31	2.1	32	83	13	84	57	3	0	39	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97