genome.fa.s9.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  96  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38483587--38483630	21	2.0	23	86	8	65	47	2	0	50	1.13
38487572--38487671	2	49.0	2	89	4	146	46	3	2	48	1.29
38491393--38491429	2	18.5	2	94	0	65	45	0	2	51	1.15
38491395--38491438	18	2.4	18	96	0	79	43	0	6	50	1.29
38492433--38492476	1	44.0	1	95	0	79	0	97	0	0	0.03
38516527--38516567	6	7.0	6	94	2	66	17	65	0	17	1.27
38533774--38533847	20	3.8	20	81	10	64	37	10	9	41	1.73
38534000--38534038	20	2.0	20	84	0	51	53	2	2	41	1.28
38535219--38535268	2	25.5	2	95	4	93	50	0	0	50	1.00
38539243--38539284	20	2.1	20	100	0	84	45	9	0	45	1.36
38541888--38541923	4	9.0	4	93	0	63	47	27	0	25	1.52
38547994--38548019	13	2.0	13	100	0	52	23	7	23	46	1.78
38550146--38550259	2	58.0	2	81	6	135	44	0	4	49	1.28
38551357--38551383	7	3.9	7	100	0	54	14	29	29	25	1.95
38558233--38558262	16	1.9	15	93	6	51	0	93	6	0	0.35
38567980--38568031	19	2.7	19	100	0	104	55	0	0	44	0.99
38567986--38568050	19	3.7	18	70	19	57	50	0	0	49	1.00
38569054--38569221	49	3.4	49	86	3	230	29	16	30	23	1.96
38574340--38574457	49	2.4	49	85	2	148	29	14	32	23	1.94
38579978--38580181	102	2.0	102	98	0	390	40	18	14	27	1.89
38584387--38584421	17	2.0	18	94	5	63	85	2	11	0	0.69
38586165--38586252	43	2.0	43	97	0	167	40	18	20	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38586560--38586649	43	2.1	43	97	0	171	34	26	10	28	1.89
38589168--38589196	2	14.5	2	100	0	58	51	0	48	0	1.00
38597683--38597741	25	2.4	25	100	0	118	44	13	20	22	1.86
38608335--38608377	17	2.5	17	76	0	50	41	0	0	58	0.98
38608278--38608376	52	1.9	51	85	6	137	42	2	1	54	1.18
38608631--38608706	19	3.9	19	68	19	57	64	5	1	28	1.23
38608730--38608986	10	24.7	10	65	14	83	52	14	3	29	1.59
38608722--38608841	31	3.8	31	75	8	91	55	10	5	29	1.56
38608733--38608852	21	5.7	21	69	12	77	55	10	5	29	1.56
38608794--38608860	32	2.1	32	83	10	84	59	11	1	26	1.41
38608848--38608929	21	4.0	21	68	16	55	50	17	2	30	1.59
38609092--38609267	10	16.8	10	65	14	52	53	13	1	30	1.50
38609176--38609225	21	2.4	20	80	12	57	44	20	2	34	1.63
38609148--38609350	105	1.9	104	86	3	282	52	15	2	29	1.57
38609287--38609340	21	2.7	20	80	11	65	50	22	3	24	1.65
38609374--38609578	11	19.7	11	65	18	57	47	16	3	32	1.63
38609498--38609578	22	3.8	21	73	11	67	49	17	1	32	1.54
38609521--38609581	31	2.0	31	87	6	88	45	19	1	32	1.60
38609811--38609858	21	2.3	21	78	7	53	56	12	4	27	1.54
38609865--38609951	31	2.8	31	79	6	104	51	17	3	27	1.61
38609160--38610010	10	82.4	10	64	16	127	51	15	4	29	1.62
38610446--38610501	21	2.7	21	88	5	78	55	12	0	32	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38610446--38610522	11	7.4	10	71	17	50	51	14	1	32	1.50
38610457--38610528	10	6.9	10	72	19	58	50	13	1	34	1.51
38610846--38610904	21	2.8	22	82	5	77	49	15	6	28	1.70
38610890--38610933	19	2.3	19	84	7	54	54	9	2	34	1.44
38610968--38611008	21	2.0	21	85	0	55	43	17	0	39	1.49
38611013--38611117	21	5.0	21	70	14	56	53	11	7	27	1.64
38611082--38611253	10	16.5	10	67	17	57	51	15	3	29	1.60
38611082--38611299	11	20.8	11	67	12	52	52	14	3	29	1.58
38611028--38611294	115	2.3	114	81	5	322	52	13	4	29	1.59
38611537--38611605	21	3.3	21	81	2	86	50	17	1	30	1.55
38611642--38611677	11	3.3	11	92	0	54	58	5	2	33	1.36
38611782--38611864	11	7.7	11	68	10	64	54	10	2	32	1.48
38611805--38611882	21	3.8	20	78	8	84	58	10	1	29	1.39
38611806--38611914	21	5.1	22	74	11	68	53	13	2	30	1.54
38612145--38612303	10	15.0	10	69	17	54	50	15	3	30	1.61
38612156--38612212	22	2.5	22	78	10	62	49	15	1	33	1.55
38612158--38612216	23	2.6	22	78	2	64	52	15	1	30	1.52
38612358--38612396	20	2.0	20	89	0	60	61	10	0	28	1.28
38612367--38612689	11	30.9	10	67	16	108	50	12	5	31	1.63
38612474--38612655	10	17.4	10	65	15	55	51	12	4	31	1.61
38612505--38612655	10	14.3	11	69	18	67	50	12	3	32	1.58
38612505--38612693	21	9.0	21	69	16	97	48	13	3	34	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38612587--38612655	32	2.2	33	82	12	90	55	10	4	30	1.53
38612472--38612765	115	2.6	117	82	9	347	49	12	4	32	1.62
38612505--38612689	31	5.9	31	73	14	105	49	12	3	33	1.59
38612662--38612708	21	2.2	22	84	3	60	53	10	4	31	1.55
38612924--38612962	21	1.9	21	89	5	62	46	20	2	30	1.64
38616040--38616087	21	2.4	21	89	6	73	54	10	6	29	1.59
38616154--38616179	10	2.6	10	100	0	52	38	11	0	50	1.39
38616219--38616267	11	4.5	11	78	14	57	48	8	6	36	1.58
38616212--38616268	10	5.5	10	76	15	53	50	8	7	33	1.60
38616232--38616275	22	2.0	22	86	0	61	47	9	6	36	1.62
38616470--38616536	11	6.5	10	75	19	50	52	13	4	29	1.60
38616511--38616600	11	8.4	11	71	19	57	58	11	5	24	1.53
38616521--38616578	21	2.8	20	76	7	62	62	10	3	24	1.43
38616559--38616609	11	4.6	11	78	9	59	54	13	3	27	1.56
38616470--38616726	10	24.4	10	67	17	60	51	14	5	28	1.65
38616654--38616726	21	3.6	19	75	23	60	56	15	2	26	1.53
38616661--38616726	31	2.1	32	88	2	98	57	13	3	25	1.51
38616799--38616841	20	2.2	20	82	0	50	60	6	2	30	1.35
38616916--38617028	43	2.6	41	76	14	111	50	13	6	30	1.65
38617007--38617055	10	4.9	10	78	7	55	46	18	4	30	1.67
38617385--38617462	32	2.5	32	82	2	95	55	15	3	25	1.57
38617407--38617489	21	4.0	20	75	16	71	49	13	2	34	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38617331--38617586	116	2.2	117	78	9	267	50	16	4	28	1.66
38617407--38617489	10	7.9	10	76	9	76	49	13	2	34	1.55
38617553--38617653	10	9.7	10	71	8	67	49	18	2	28	1.62
38617571--38617653	21	3.9	21	73	6	69	49	20	3	26	1.65
38617413--38617653	106	2.3	106	78	7	249	49	16	4	29	1.64
38617873--38618033	10	15.2	10	69	14	74	46	19	3	30	1.65
38617925--38617983	21	2.8	20	78	17	57	52	18	3	25	1.61
38617970--38618093	21	5.8	21	70	9	81	50	21	3	24	1.63
38617967--38618093	43	3.0	43	73	6	132	50	21	3	25	1.63
38618109--38618185	39	1.9	40	81	5	93	58	9	2	29	1.42
38618263--38618326	20	3.1	20	82	8	58	51	14	4	29	1.62
38618272--38618349	22	3.7	21	78	8	70	51	14	2	32	1.55
38618270--38618425	10	14.7	10	67	16	57	50	15	3	30	1.62
38618262--38618350	32	2.9	32	81	5	94	51	14	3	30	1.58
38618386--38618424	21	1.9	20	89	5	60	48	17	5	28	1.68
38618485--38618531	21	2.2	21	84	0	67	55	14	6	23	1.63
38618678--38618843	10	15.8	10	69	14	70	51	14	4	28	1.62
38618676--38618770	32	3.0	31	78	9	84	54	12	4	28	1.56
38618756--38618842	31	2.8	31	85	0	111	51	14	4	28	1.62
38618711--38618854	21	6.9	21	70	10	89	50	13	4	31	1.61
38618762--38618854	31	3.0	32	85	3	91	49	15	4	31	1.63
38618839--38618917	31	2.5	31	79	6	88	50	13	6	29	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38619182--38619233	22	2.5	21	82	14	63	53	7	9	28	1.61
38619197--38619320	22	5.9	21	77	14	96	52	11	4	32	1.56
38619159--38619320	31	5.2	29	76	15	105	51	12	4	30	1.60
38619199--38619320	21	5.9	21	77	15	94	52	11	4	31	1.56
38619228--38619320	32	3.0	31	81	9	100	50	12	3	33	1.57
38619159--38619764	10	57.9	10	64	15	104	49	15	5	29	1.68
38619273--38619360	31	2.8	31	77	8	88	50	14	4	30	1.63
38619441--38619568	21	6.1	21	75	15	72	55	12	5	26	1.58
38619440--38619517	31	2.5	31	81	8	88	57	10	8	23	1.60
38619522--38619554	12	2.8	12	86	13	50	54	9	3	33	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97