genome.fa.s9.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  84  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33103412--33103486	6	12.5	6	88	0	96	41	0	8	50	1.32
33103412--33103486	10	7.5	10	90	0	96	41	0	8	50	1.32
33106244--33106286	20	2.1	21	86	4	61	60	0	4	34	1.17
33106327--33106498	83	2.1	83	81	9	199	55	4	1	39	1.27
33112710--33112739	2	15.5	2	93	6	53	50	0	0	50	1.00
33114903--33114960	28	2.1	28	100	0	116	34	3	20	41	1.69
33115905--33115947	19	2.2	20	84	12	63	27	11	9	51	1.69
33116036--33116104	27	2.6	27	88	4	104	18	5	26	49	1.70
33130275--33130335	19	3.5	19	63	21	51	37	9	11	40	1.75
33130737--33130772	18	1.9	18	88	5	54	13	5	8	72	1.27
33131475--33131524	2	25.0	2	92	8	84	48	2	0	50	1.12
33134898--33134932	15	2.3	15	90	0	52	40	5	20	34	1.76
33135154--33135240	33	2.6	33	87	1	120	28	0	0	71	0.87
33135156--33135223	26	2.6	27	84	9	79	27	0	0	72	0.85
33135230--33135347	15	8.0	15	64	20	52	28	4	0	66	1.16
33152185--33152289	53	2.0	53	92	0	174	39	13	29	18	1.88
33153212--33153250	16	2.4	17	86	4	53	61	0	12	25	1.31
33155240--33155586	175	2.0	175	86	2	491	15	41	9	33	1.79
33160998--33161026	2	15.0	2	92	7	51	51	0	0	48	1.00
33162442--33162476	2	17.5	2	93	0	61	48	0	0	51	1.00
33167404--33167603	105	1.9	103	90	2	312	42	6	6	45	1.53
33167707--33167793	11	7.4	11	69	19	50	42	2	3	51	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33171376--33171513	42	3.3	41	78	2	132	30	17	18	34	1.94
33177557--33177595	14	2.7	14	88	4	51	66	0	2	30	1.05
33182790--33183003	107	2.0	107	97	0	401	38	12	10	38	1.77
33183876--33183916	21	2.0	20	90	4	64	21	4	9	63	1.44
33192996--33193051	17	3.3	17	72	16	53	14	8	0	76	1.00
33196635--33196748	29	4.0	29	81	5	124	28	16	22	31	1.96
33198465--33198506	20	2.1	20	100	0	84	33	9	4	52	1.55
33203804--33204134	24	13.5	24	91	5	527	25	21	45	7	1.77
33209602--33209701	35	2.9	34	86	5	139	48	4	22	26	1.68
33217250--33217335	35	2.5	35	83	7	104	51	6	19	22	1.71
33217895--33217962	29	2.4	27	77	17	77	61	2	0	35	1.11
33217897--33217967	31	2.4	30	81	9	83	63	2	0	33	1.09
33218788--33218950	87	1.9	86	83	6	213	35	12	10	41	1.77
33220258--33220291	2	17.0	2	100	0	68	50	0	0	50	1.00
33222957--33223020	28	2.3	28	88	0	92	40	25	10	23	1.87
33222995--33223128	34	3.9	34	85	0	178	37	27	15	19	1.92
33222995--33223128	68	2.0	68	89	0	205	37	27	15	19	1.92
33224022--33224084	31	2.0	31	100	0	126	44	12	15	26	1.83
33232266--33232345	35	2.2	37	82	6	92	37	13	21	27	1.91
33236160--33236204	17	2.6	18	82	7	65	48	2	0	48	1.13
33238655--33238717	31	2.0	32	87	9	94	25	20	20	33	1.97
33239169--33239233	32	2.0	32	85	5	87	26	21	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33241977--33242013	18	2.0	18	89	5	56	72	0	27	0	0.84
33242123--33242226	52	2.0	51	81	5	120	46	8	11	33	1.71
33242723--33242787	32	2.0	32	87	0	94	26	26	18	29	1.98
33267848--33267916	14	4.9	15	68	21	51	53	4	0	42	1.20
33268000--33268137	73	1.9	73	81	4	170	49	8	4	37	1.54
33270851--33270901	21	2.5	19	78	12	57	60	7	1	29	1.36
33289796--33289841	22	2.1	22	95	0	83	41	19	0	39	1.52
33300501--33300569	31	2.3	30	84	2	93	53	2	2	40	1.31
33330662--33330957	33	9.0	33	82	3	231	30	21	27	21	1.98
33330695--33330933	99	2.4	98	82	6	277	30	22	26	20	1.98
33330695--33331016	66	4.9	66	76	6	249	30	22	27	20	1.98
33332654--33332690	2	19.0	2	94	5	67	51	0	0	48	1.00
33333716--33333757	15	2.8	15	79	13	59	28	2	30	38	1.70
33333966--33334006	21	1.9	22	90	5	66	68	4	0	26	1.10
33334132--33334184	20	2.7	20	93	0	88	33	11	11	43	1.76
33336138--33336202	31	2.1	31	82	5	78	66	13	12	7	1.45
33336138--33336202	32	2.1	31	82	2	76	66	13	12	7	1.45
33336404--33336434	15	2.1	15	94	5	55	77	12	6	3	1.08
33346599--33346670	2	36.0	2	91	0	117	48	2	0	47	1.16
33348239--33348287	8	6.1	8	81	9	64	26	0	0	73	0.83
33348222--33348287	24	2.8	24	83	4	71	27	0	1	71	0.95
33367290--33367316	2	13.5	2	100	0	54	48	51	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33377768--33377811	23	2.0	23	90	4	72	15	6	9	68	1.38
33405231--33405259	2	14.5	2	100	0	58	48	0	0	51	1.00
33405297--33405325	2	14.5	2	100	0	58	48	0	0	51	1.00
33410338--33410385	21	2.2	21	88	3	69	58	0	0	41	0.98
33410467--33410608	74	1.9	74	83	0	185	47	7	4	40	1.52
33421983--33422065	42	2.0	42	95	0	148	36	20	8	34	1.83
33456919--33457010	29	3.2	29	87	4	116	36	10	13	39	1.79
33456919--33457095	30	6.3	29	76	15	124	37	11	10	40	1.76
33456985--33457060	24	3.1	23	74	10	62	35	10	9	44	1.71
33456949--33457126	81	2.2	76	74	15	169	38	14	7	39	1.75
33457203--33457269	34	2.0	34	90	0	107	25	16	17	40	1.90
33457243--33457291	24	2.0	24	96	0	89	28	8	18	44	1.78
33462393--33462439	23	2.0	23	87	0	67	25	19	34	21	1.96
33462409--33462549	47	3.0	47	89	0	210	25	17	33	24	1.96
33464036--33464070	17	2.0	17	88	5	52	14	5	31	48	1.67
33464118--33464319	31	6.5	31	90	0	287	22	17	22	37	1.94
33465319--33465403	31	2.7	31	88	0	116	28	24	20	27	1.99
33467349--33467384	9	4.0	9	88	0	54	25	25	19	30	1.98
33468929--33469232	31	9.8	31	86	2	405	40	18	14	25	1.89
33470092--33470152	29	2.1	29	90	0	95	50	13	6	29	1.66
33473930--33473961	17	1.9	17	93	6	57	34	0	0	65	0.93
33476829--33476878	18	2.8	19	79	8	61	50	0	4	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33477362--33477396	15	2.2	17	90	10	56	57	0	0	42	0.99
33477641--33477973	133	2.5	133	83	2	411	15	40	15	28	1.87
33481420--33481514	14	7.0	14	66	14	56	23	1	16	58	1.44
33481356--33481558	40	5.0	40	78	8	223	21	0	18	59	1.43
33495580--33495608	3	9.7	3	100	0	58	68	0	0	31	0.89
33505013--33505047	18	1.9	18	88	0	52	48	5	5	40	1.51
33507796--33507868	35	2.1	35	94	0	128	41	19	20	19	1.91
33507845--33507894	26	1.9	26	83	0	64	38	14	24	24	1.92
33508144--33508235	29	3.2	29	85	3	87	17	27	8	46	1.77
33508173--33508252	14	5.7	14	70	18	51	15	25	8	51	1.71
33508173--33508264	29	3.1	29	88	1	121	14	25	7	53	1.67
33509137--33509425	102	2.8	101	80	2	328	22	20	13	43	1.87
33509489--33509543	26	2.1	27	83	10	69	27	14	18	40	1.89
33512815--33512868	3	17.7	3	77	11	56	68	0	0	31	0.90
33513747--33513898	81	1.9	80	87	5	225	57	7	5	29	1.47
33513921--33513973	15	3.5	15	71	0	52	32	18	16	32	1.94
33513917--33513988	30	2.4	30	80	0	99	31	22	18	27	1.97
33514163--33514235	35	2.1	35	92	0	119	43	20	17	17	1.88
33514520--33514586	29	2.3	28	84	5	80	16	26	7	49	1.72
33514536--33514617	29	2.8	29	83	7	87	14	23	6	56	1.61
33516611--33516644	16	2.1	16	88	0	50	35	11	29	23	1.90
33516626--33516692	27	2.5	27	90	0	107	29	13	23	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33519610--33520002	203	1.9	203	85	1	536	31	17	18	32	1.94
33531480--33531523	21	2.2	20	84	12	54	22	6	6	63	1.43
33534803--33534868	30	2.2	30	83	0	78	48	19	7	24	1.75
33534771--33534907	60	2.3	60	77	6	143	41	21	8	29	1.81
33534863--33534941	30	2.6	30	72	7	88	40	21	10	27	1.85
33534820--33534941	60	2.0	60	82	6	149	41	23	9	25	1.83
33538545--33538622	25	2.9	28	73	23	76	43	2	1	52	1.23
33538680--33538747	22	2.8	23	75	16	66	48	0	0	51	1.00
33538682--33538741	8	7.4	8	73	16	52	51	0	0	48	1.00
33540080--33540257	27	6.6	27	69	10	103	30	15	14	39	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97