genome.fa.s9.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  59  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23717028--23717072	3	15.0	3	100	0	90	0	33	0	66	0.92
23721742--23721781	19	2.0	21	85	9	57	45	20	10	25	1.81
23721933--23722078	37	3.8	37	72	15	125	26	41	11	20	1.87
23721932--23722094	37	4.2	39	69	20	117	27	38	11	22	1.88
23724307--23724353	24	2.0	24	95	0	85	46	31	4	17	1.67
23735667--23735719	28	1.9	27	88	3	79	28	22	18	30	1.98
23735764--23735809	20	2.3	20	88	7	67	45	17	4	32	1.68
23736737--23736766	12	2.5	12	94	0	51	56	6	0	36	1.26
23737716--23737745	15	2.0	15	93	0	51	26	16	6	50	1.70
23758839--23758871	6	5.7	6	92	3	50	51	9	18	21	1.73
23758940--23758969	15	2.0	15	93	0	51	26	23	6	43	1.78
23760955--23760979	2	12.5	2	100	0	50	48	0	0	52	1.00
23775441--23775481	12	3.3	13	83	10	59	36	12	17	34	1.87
23775441--23775490	24	2.1	24	88	0	73	38	14	16	32	1.88
23778037--23778097	24	2.4	26	78	15	65	11	36	3	49	1.55
23778057--23778126	30	2.3	30	87	0	95	12	35	4	47	1.62
23778083--23778126	15	3.0	14	75	12	52	15	34	4	45	1.67
23787089--23787206	30	3.9	30	74	12	118	33	12	21	32	1.91
23787088--23787209	60	2.0	60	81	12	144	32	12	20	34	1.90
23788315--23788360	20	2.3	20	88	7	67	32	4	17	45	1.68
23788405--23788457	28	1.9	27	88	3	79	30	18	22	28	1.98
23788405--23788463	28	2.1	28	84	6	75	30	20	23	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23791107--23791208	47	2.2	47	96	0	186	32	16	19	31	1.94
23791870--23791895	8	3.2	8	100	0	52	46	0	53	0	1.00
23792426--23792465	20	2.2	19	86	13	57	42	7	7	42	1.61
23794007--23794031	13	1.9	13	100	0	50	48	8	0	44	1.32
23799602--23799641	5	8.0	5	97	0	71	40	22	0	37	1.54
23799602--23799647	15	3.1	15	90	0	56	36	21	4	36	1.74
23799687--23799728	15	2.8	15	88	0	66	57	14	2	26	1.50
23801120--23801144	13	1.9	13	100	0	50	48	8	0	44	1.32
23809248--23809399	76	2.0	76	97	0	286	23	13	17	46	1.83
23809794--23809898	38	2.8	38	83	0	129	24	29	17	28	1.97
23814763--23814790	10	2.8	10	100	0	56	53	10	17	17	1.72
23822532--23822575	17	2.5	17	81	3	52	38	0	2	59	1.10
23822882--23823136	86	2.9	86	88	2	368	14	37	16	31	1.88
23824611--23824672	21	2.8	20	79	20	54	59	11	0	29	1.32
23852996--23853112	35	3.5	33	71	10	94	26	13	23	35	1.92
23853019--23853125	35	3.2	33	74	8	90	32	14	22	30	1.93
23852996--23853127	67	2.0	67	84	0	174	28	14	24	33	1.94
23856958--23857466	254	2.0	254	94	0	894	41	14	16	28	1.87
23873703--23873734	12	2.6	13	90	9	50	68	0	25	6	1.12
23885887--23886048	43	3.8	43	85	3	202	24	20	34	20	1.96
23886102--23886131	2	15.0	2	100	0	60	50	0	0	50	1.00
23890095--23890120	3	8.7	3	100	0	52	0	0	65	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23903163--23903203	11	3.5	12	81	15	50	46	2	0	51	1.14
23903684--23903721	12	3.2	12	84	0	58	52	0	47	0	1.00
23913881--23914006	42	3.0	42	85	2	155	21	19	34	23	1.96
23922589--23922684	47	2.0	47	100	0	192	48	23	6	20	1.72
23927911--23927956	19	2.4	20	82	10	60	54	0	2	43	1.12
23928359--23928396	20	1.9	20	100	0	76	28	5	21	44	1.73
23954138--23954234	36	2.7	36	88	1	131	25	13	25	35	1.93
23958457--23958494	20	1.9	19	89	5	58	10	18	5	65	1.41
23958457--23958501	20	2.2	20	84	7	56	8	20	4	66	1.36
23959294--23959477	55	3.5	51	86	7	203	19	13	39	28	1.89
23959332--23959477	55	2.7	55	91	2	240	19	13	36	30	1.90
23974049--23974113	28	2.3	28	89	0	103	21	23	23	32	1.98
23976805--23976893	2	43.5	2	84	6	99	44	4	3	46	1.40
23976937--23977061	42	3.0	42	89	0	187	23	32	22	22	1.98
23980094--23980120	14	1.9	14	100	0	54	59	11	0	29	1.32
23984561--23984607	21	2.2	22	92	3	78	40	19	17	23	1.91
24014992--24015068	36	2.1	36	83	4	93	29	14	23	32	1.94
24015011--24015090	36	2.2	36	81	2	88	33	13	21	31	1.92
24032426--24032521	47	2.0	47	85	0	129	31	20	15	32	1.94
24034321--24034463	35	4.1	35	92	1	216	29	31	9	30	1.88
24040583--24040642	31	2.0	30	96	0	102	18	45	16	18	1.85
24041504--24041547	19	2.3	19	76	0	52	43	9	31	15	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24050357--24050382	12	2.2	12	100	0	52	15	53	7	23	1.67
24052934--24053455	220	2.4	214	83	5	669	41	8	4	45	1.55
24053609--24053638	2	15.0	2	100	0	60	50	0	0	50	1.00
24054617--24054662	19	2.4	19	88	0	74	23	23	21	30	1.99
24055754--24055831	40	1.9	40	84	2	102	35	10	7	46	1.67
24055768--24055848	40	2.1	39	84	9	103	34	8	9	46	1.68
24057889--24057929	20	2.0	20	95	0	73	53	14	12	19	1.72
24058970--24059035	26	2.5	27	80	7	73	33	1	0	65	1.02
24068077--24068195	63	1.9	63	85	0	166	22	30	15	31	1.95
24068452--24068512	22	2.7	22	84	2	77	31	16	26	26	1.96
24068428--24068577	23	6.6	23	80	6	171	28	12	22	37	1.90
24074809--24074846	20	1.9	20	100	0	76	44	21	5	28	1.73
24075532--24075755	31	7.3	31	73	7	179	27	12	31	28	1.93
24075586--24075754	61	2.7	62	89	1	259	26	12	33	27	1.92
24075590--24075766	31	5.7	31	84	4	214	25	11	34	27	1.91
24078726--24078767	21	2.0	21	90	0	66	21	26	19	33	1.97
24083890--24084086	73	2.7	72	79	12	181	22	17	16	42	1.89
24085303--24085412	36	3.1	36	97	0	202	23	32	20	22	1.98
24087670--24087822	31	4.7	31	80	11	155	36	19	13	30	1.91
24087730--24087805	38	2.0	38	92	0	125	36	23	14	25	1.93
24088468--24088515	23	2.1	23	88	0	69	27	33	16	22	1.96
24088659--24088712	23	2.3	23	96	0	99	20	33	20	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24088741--24088845	23	4.5	23	72	5	68	22	35	13	28	1.92
24088526--24088868	174	2.0	174	85	1	463	24	33	13	27	1.94
24088885--24088982	23	4.3	23	77	12	69	24	29	13	32	1.93
24088901--24089028	44	2.8	46	80	8	129	21	31	14	33	1.92
24088970--24089042	23	3.2	22	77	11	67	19	31	15	34	1.92
24088970--24089112	47	3.1	48	82	7	161	23	34	13	27	1.92
24091906--24091973	30	2.2	30	86	2	91	44	0	4	51	1.21
24091906--24091978	31	2.4	30	86	2	92	42	1	4	52	1.29
24091962--24092002	21	2.0	21	95	0	73	51	2	0	46	1.14
24092141--24092338	84	2.3	86	82	5	242	37	7	2	53	1.40
24092293--24092341	19	2.6	19	80	0	62	42	4	0	53	1.20
24096115--24096161	15	3.1	15	84	0	58	29	2	17	51	1.57
24100349--24100394	19	2.4	20	82	10	60	54	0	2	43	1.12
24105111--24105177	29	2.3	29	94	0	116	8	46	10	34	1.70
24105518--24105547	10	3.0	10	90	0	51	0	13	0	86	0.57
24105909--24105980	1	72.0	1	88	0	108	0	2	2	94	0.37
24107311--24107462	81	1.9	81	84	0	205	11	26	9	52	1.68
24111353--24112460	555	2.0	553	99	0	2198	30	18	15	35	1.92
24117271--24117314	10	4.3	10	82	5	52	4	9	0	86	0.70
24117273--24117313	11	3.9	11	81	9	50	4	9	0	85	0.73
24117273--24117324	16	3.3	15	84	7	68	5	7	3	82	0.93
24129423--24129488	24	2.8	24	78	0	69	60	22	1	15	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24144972--24145007	19	1.9	19	88	5	56	44	2	5	47	1.41
24145024--24145086	20	3.2	20	88	2	92	30	42	3	23	1.70
24145086--24145244	43	3.7	43	84	1	203	20	37	18	22	1.94
24154786--24154875	42	2.1	42	91	0	144	37	22	15	24	1.93
24154860--24154895	17	2.1	17	94	0	63	30	44	0	25	1.54
24154818--24154933	58	2.0	59	86	1	162	37	27	11	24	1.89
24154932--24155017	44	2.0	44	86	2	120	36	24	15	24	1.94
24155606--24155815	105	2.0	104	94	0	366	44	16	10	28	1.81
24158713--24158756	20	2.2	20	88	8	63	50	0	4	45	1.22
24160252--24160324	2	37.0	2	83	8	87	47	2	1	46	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97