genome.fa.s9.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  83  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32768025--32768089	28	2.3	28	84	5	78	29	24	10	35	1.89
32768112--32768151	19	2.2	19	86	4	55	20	12	17	50	1.78
32768168--32768225	25	2.3	26	84	3	82	32	18	10	37	1.85
32768967--32769001	17	2.0	18	88	5	54	25	0	0	74	0.82
32773539--32773572	17	2.0	17	88	0	50	47	2	17	32	1.63
32775706--32775789	6	13.7	6	85	5	105	50	11	0	38	1.40
32775704--32775789	26	3.4	26	91	3	131	50	11	0	38	1.39
32782771--32782852	2	42.5	2	82	11	73	54	1	2	40	1.21
32782756--32782848	47	2.0	46	95	2	168	56	2	4	35	1.31
32786373--32786414	18	2.1	21	83	12	54	61	0	7	30	1.22
32787044--32787083	21	1.9	21	89	0	62	27	5	0	67	1.11
32791704--32791756	18	3.2	18	70	22	53	50	0	0	49	1.00
32791919--32791964	15	2.8	17	81	18	62	50	0	2	47	1.13
32792123--32792196	35	2.1	35	90	2	114	29	1	10	58	1.41
32792591--32792620	2	15.5	2	93	6	53	50	0	0	50	1.00
32799674--32799813	45	3.1	45	82	6	167	30	17	16	35	1.93
32799790--32799881	24	4.0	24	71	8	91	27	16	15	41	1.88
32799696--32799982	114	2.5	113	82	5	328	27	18	17	36	1.93
32799752--32799881	69	1.9	69	87	3	190	30	16	14	39	1.88
32799864--32800068	69	3.0	68	85	3	277	26	18	19	36	1.94
32799916--32800013	24	4.2	24	64	12	60	24	14	18	42	1.87
32800430--32800507	38	2.1	38	97	0	147	41	15	8	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32803322--32803370	23	2.2	24	85	10	68	77	0	0	22	0.77
32803324--32803370	19	2.5	20	83	13	64	78	0	0	21	0.75
32803327--32803366	16	2.6	16	85	14	57	80	0	0	20	0.72
32803323--32803370	11	4.2	12	85	15	66	79	0	0	20	0.74
32803328--32803369	14	2.9	14	89	10	59	78	0	0	21	0.75
32804420--32804497	35	2.2	35	81	0	102	50	19	8	21	1.75
32810907--32811530	307	2.0	307	98	0	1203	31	15	15	37	1.89
32819307--32819369	31	2.0	31	100	0	126	55	3	12	28	1.52
32838585--32838632	25	2.1	24	85	14	66	4	64	2	29	1.23
32855010--32855073	25	2.5	25	80	12	69	54	3	0	42	1.16
32863686--32863758	26	2.9	24	80	11	67	27	16	17	38	1.91
32863804--32863854	24	2.1	24	88	0	75	17	15	23	43	1.88
32863830--32863948	45	2.6	45	81	0	139	33	19	13	33	1.90
32870102--32870171	35	2.0	35	94	0	122	38	8	28	24	1.85
32876301--32876339	15	2.6	15	95	0	69	53	33	10	2	1.48
32898990--32899064	30	2.6	28	77	10	80	33	2	5	58	1.34
32899843--32899871	4	7.2	4	100	0	58	75	0	0	24	0.80
32900726--32900778	17	3.1	17	75	5	52	77	0	16	5	0.96
32900855--32900895	20	2.0	20	95	0	73	26	9	7	56	1.58
32903946--32903978	17	1.9	17	88	11	50	12	9	27	51	1.69
32905696--32905727	2	16.0	2	93	0	55	46	0	0	53	1.00
32910258--32910364	56	2.0	55	92	7	175	52	0	35	11	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32915888--32915954	16	4.2	16	75	3	55	53	4	5	35	1.46
32924247--32924335	9	8.7	10	73	16	58	71	0	1	26	0.92
32924247--32924298	9	5.4	9	84	11	68	67	0	1	30	1.02
32984428--32984470	18	2.3	19	80	11	54	25	0	4	69	1.07
32984491--32984549	21	2.6	23	84	7	77	50	0	0	49	1.00
32984488--32984604	45	2.7	43	79	9	132	43	0	1	54	1.10
32984490--32984561	21	3.3	21	74	11	72	47	0	1	51	1.09
32984578--32984630	27	2.0	27	100	0	106	47	0	3	49	1.19
32984933--32984994	19	3.1	20	76	15	74	45	0	0	54	0.99
32984958--32984988	16	1.9	16	100	0	62	48	0	0	51	1.00
32987027--32987123	31	3.3	30	80	5	108	25	13	21	39	1.90
32987098--32987145	24	1.9	26	83	8	64	29	16	18	35	1.93
32989600--32989665	30	2.2	30	91	0	105	13	30	6	50	1.66
32990051--32990119	34	2.0	34	97	0	129	42	8	18	30	1.81
32993128--32993180	28	1.9	27	84	3	70	30	20	18	30	1.97
33000983--33001031	25	2.0	23	84	7	62	51	6	4	38	1.46
33001443--33001475	3	11.0	3	100	0	66	66	0	0	33	0.92
33003019--33003282	92	2.9	92	91	1	422	29	23	27	19	1.98
33003088--33003239	47	3.3	47	65	7	121	27	24	25	22	2.00
33005381--33005405	13	1.9	13	100	0	50	44	0	8	48	1.32
33006932--33006985	28	1.9	28	85	7	74	46	3	0	50	1.19
33006934--33006982	17	3.1	16	82	8	57	44	4	0	51	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33007552--33007576	11	2.3	11	100	0	50	52	24	8	16	1.70
33011234--33011268	2	18.0	2	94	5	63	48	0	0	51	1.00
33018793--33018819	2	13.5	2	100	0	54	51	0	48	0	1.00
33020614--33020647	2	17.0	2	93	0	59	47	0	2	50	1.16
33020614--33020654	10	4.1	10	93	0	55	48	0	4	46	1.23
33027064--33027109	20	2.2	22	84	7	60	32	2	6	58	1.36
33028843--33028880	20	2.0	20	89	5	60	84	0	7	7	0.79
33029023--33029058	12	3.1	12	88	8	56	75	11	8	5	1.19
33029218--33029255	20	1.9	20	89	10	60	26	0	31	42	1.56
33030224--33030287	15	4.1	15	70	20	51	75	0	6	18	1.01
33030486--33030544	22	2.8	21	78	16	59	71	0	8	20	1.12
33030491--33030553	20	3.0	20	76	14	65	73	0	6	20	1.05
33030580--33030621	16	2.6	17	82	17	54	35	16	11	35	1.86
33036462--33036513	2	26.5	2	96	3	97	48	0	0	51	1.00
33041725--33041903	55	3.3	55	78	3	155	12	11	33	42	1.79
33041937--33042018	31	2.6	31	88	3	112	25	18	24	31	1.97
33045482--33045789	31	10.0	31	78	1	296	40	19	17	22	1.91
33045490--33045789	93	3.2	92	83	1	339	40	20	17	22	1.91
33046461--33046518	14	3.9	15	78	14	59	51	1	13	32	1.51
33047942--33048307	31	11.8	31	75	5	267	40	19	19	20	1.92
33047946--33048307	62	5.8	63	80	4	310	39	19	20	20	1.92
33048073--33048307	93	2.5	94	87	6	318	40	19	19	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33048675--33049172	156	3.2	156	82	4	565	26	19	18	35	1.95
33050782--33051064	31	9.1	31	86	3	338	37	20	17	24	1.93
33050782--33051064	93	3.0	94	87	4	387	37	20	17	24	1.93
33051603--33051901	47	6.4	47	81	1	350	23	35	14	26	1.94
33051603--33051901	140	2.1	141	83	3	370	23	35	14	26	1.94
33051603--33051951	94	3.7	94	83	4	400	23	33	15	26	1.95
33057395--33057467	19	3.9	19	98	1	139	52	15	10	21	1.73
33057395--33057482	38	2.4	36	90	7	135	52	13	11	22	1.72
33057665--33057689	13	1.9	13	100	0	50	40	20	8	32	1.81
33058209--33058271	20	3.1	19	82	13	72	57	4	0	38	1.20
33069471--33069561	45	2.0	45	91	0	146	29	16	24	29	1.96
33069480--33069582	45	2.3	45	82	0	125	33	17	21	27	1.96
33069590--33069693	45	2.3	45	81	0	118	30	18	20	30	1.96
33069471--33069778	121	2.6	121	84	1	377	34	17	19	29	1.94
33069672--33069880	76	2.7	76	83	4	240	37	17	16	28	1.91
33069835--33069932	29	3.3	29	83	7	101	36	12	14	36	1.83
33070830--33070868	10	4.0	10	96	3	71	28	10	10	51	1.68
33071084--33071380	26	12.4	26	72	15	221	22	13	26	36	1.92
33071062--33071352	95	3.1	95	90	0	456	22	13	27	36	1.92
33071268--33071399	23	5.5	23	77	13	81	24	15	25	34	1.94
33071411--33071481	22	3.3	22	86	7	92	46	18	9	25	1.79
33071421--33071480	21	2.8	21	90	7	86	43	20	8	28	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33071507--33071555	22	2.2	22	82	10	55	46	22	4	26	1.69
33078335--33078478	35	4.1	35	87	0	198	43	16	20	19	1.88
33078372--33078507	70	1.9	70	82	2	166	46	17	16	19	1.85
33078714--33078765	14	3.6	14	75	14	52	19	23	7	50	1.73
33078714--33078799	29	3.0	28	83	6	100	19	24	8	47	1.76
33079002--33079026	13	1.9	13	100	0	50	20	32	0	48	1.50
33084373--33084487	56	2.1	56	91	0	185	32	12	17	38	1.87
33086244--33086328	43	2.0	43	97	0	161	47	8	11	32	1.70
33095595--33095629	3	11.7	3	100	0	70	0	31	0	68	0.90
33103412--33103486	4	18.8	4	88	0	96	41	0	8	50	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97