genome.fa.s9.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  41  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16826838--16827173	26	14.1	26	73	15	205	23	13	26	36	1.91
16826842--16827146	95	3.2	95	86	5	436	23	13	26	36	1.92
16827020--16827072	21	2.5	21	96	0	97	22	15	26	35	1.93
16828754--16828798	15	2.9	16	80	12	67	33	26	6	33	1.83
16830132--16830188	2	29.0	2	83	3	62	43	1	7	47	1.40
16839518--16839542	3	8.3	3	100	0	50	32	0	0	68	0.90
16843067--16843106	21	1.9	21	89	0	62	32	15	15	37	1.88
16856681--16856706	13	2.0	13	100	0	52	46	7	0	46	1.31
16857212--16857246	10	3.5	10	96	0	61	37	22	0	40	1.55
16858793--16858905	58	1.9	58	90	0	181	35	7	17	38	1.79
16864248--16864302	21	2.7	20	81	15	76	34	7	21	36	1.81
16864239--16864305	21	3.2	21	79	10	75	35	5	20	37	1.78
16864959--16865006	25	2.0	24	84	12	62	6	10	12	70	1.32
16870149--16870183	18	2.0	18	88	5	54	54	11	0	34	1.37
16871209--16871240	2	16.0	2	100	0	64	50	0	0	50	1.00
16872358--16872404	23	2.0	23	100	0	94	29	38	12	19	1.89
16873655--16873786	36	3.6	36	74	2	129	29	23	15	31	1.96
16875260--16875454	72	2.7	72	78	10	220	46	9	16	27	1.77
16912707--16913040	167	2.0	167	92	2	564	26	16	27	29	1.97
16913059--16913099	15	2.8	15	88	3	57	24	2	17	56	1.53
16919338--16919381	19	2.3	19	84	0	52	61	0	0	38	0.96
16919796--16919824	15	1.9	15	100	0	58	48	17	6	27	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16920072--16920119	16	2.9	17	81	9	55	29	0	6	64	1.18
16920104--16920141	20	1.9	19	94	5	67	28	0	0	71	0.87
16926700--16926741	20	2.2	19	84	16	52	30	4	26	38	1.77
16926772--16926823	2	26.0	2	92	0	86	50	0	1	48	1.12
16926850--16926968	37	3.2	37	91	4	204	26	10	36	26	1.88
16931483--16931523	15	2.7	15	82	17	50	46	4	14	34	1.66
16936768--16936813	20	2.3	20	92	3	76	15	6	15	63	1.50
16941974--16942027	28	2.0	28	88	3	83	29	22	18	29	1.97
16956521--16956571	27	1.9	27	92	4	86	23	3	45	27	1.70
16965108--16965196	35	2.5	36	78	14	94	12	29	20	38	1.89
16966971--16967014	19	2.3	19	80	0	52	72	4	11	11	1.25
16968344--16968405	27	2.3	27	81	13	74	74	1	3	20	1.05
16977361--16977409	11	4.2	12	77	12	57	0	26	4	69	1.06
16983951--16984021	36	2.0	36	88	2	108	28	12	25	33	1.92
16985463--16985569	32	3.2	33	83	7	128	34	26	11	28	1.90
16985488--16985584	33	2.9	33	83	4	115	38	28	10	22	1.87
16986666--16986699	17	1.9	18	88	5	52	50	2	0	47	1.16
16988829--16988957	2	68.0	2	77	18	98	44	0	3	47	1.21
16988830--16988957	9	13.8	9	73	24	72	44	0	3	47	1.21
16988822--16988955	71	2.0	66	87	9	157	43	0	5	47	1.28
17006482--17006618	71	1.9	71	83	7	177	24	24	11	39	1.88
17014080--17014114	18	1.9	18	94	0	61	42	0	25	31	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17017919--17018030	43	2.6	43	91	0	179	24	21	35	18	1.95
17017925--17018043	43	2.8	43	85	2	159	24	20	36	18	1.94
17018040--17018088	23	2.1	23	81	7	55	24	0	38	36	1.56
17021568--17021611	14	3.4	14	70	23	51	40	0	0	59	0.98
17021559--17021611	24	2.2	25	93	3	90	39	1	0	58	1.09
17021744--17021782	20	2.0	20	89	0	60	30	0	2	66	1.05
17026659--17026739	22	3.7	22	72	6	65	19	11	28	40	1.86
17026662--17026758	44	2.2	44	90	0	149	21	12	27	38	1.89
17026686--17026767	22	3.7	22	72	6	67	23	15	26	34	1.95
17026787--17026849	22	2.9	22	87	0	90	19	11	25	44	1.83
17026689--17026840	82	1.9	82	85	2	216	22	13	26	38	1.91
17026812--17026859	22	2.2	22	88	0	69	20	10	31	37	1.87
17028122--17028175	20	2.8	18	78	13	56	62	9	1	25	1.35
17029988--17030068	22	3.7	22	77	0	81	23	8	34	33	1.85
17030063--17030124	23	2.7	23	82	2	63	30	14	22	32	1.94
17032140--17032180	19	2.2	19	90	0	64	17	21	29	31	1.96
17033283--17033324	20	2.1	20	90	0	66	47	9	26	16	1.77
17039316--17039562	71	3.5	70	76	9	207	27	18	15	37	1.92
17039826--17039949	56	2.2	54	81	4	140	34	20	14	29	1.93
17043989--17044106	59	2.0	60	91	1	193	42	21	11	24	1.86
17044136--17044170	17	2.0	18	88	5	54	68	8	5	17	1.35
17046653--17046694	21	2.0	22	85	4	59	33	21	0	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17050033--17050089	23	2.5	23	97	0	105	29	24	0	45	1.53
17053126--17053171	9	5.2	9	75	15	51	36	0	2	60	1.09
17053125--17053167	17	2.5	17	96	0	77	32	0	4	62	1.15
17061293--17061375	42	2.0	42	90	2	130	48	18	13	20	1.81
17065832--17065974	40	3.6	40	87	1	200	20	38	19	21	1.94
17066092--17066135	2	22.0	2	100	0	88	50	0	0	50	1.00
17072399--17072457	21	2.8	20	75	14	55	25	3	25	45	1.69
17072406--17072452	23	2.0	23	84	8	60	25	2	25	46	1.64
17072701--17072806	41	2.6	41	87	0	158	28	7	23	40	1.82
17076132--17076158	2	13.5	2	100	0	54	48	0	0	51	1.00
17077282--17077350	34	2.0	34	88	5	104	26	11	21	40	1.87
17077688--17077727	17	2.4	16	84	15	55	27	15	12	45	1.82
17078004--17078031	2	14.0	2	100	0	56	50	50	0	0	1.00
17079611--17079780	71	2.4	71	84	2	191	24	17	11	46	1.81
17084411--17084465	22	2.4	23	75	9	58	49	9	0	41	1.34
17085478--17085539	27	2.2	28	86	8	83	56	4	0	38	1.21
17091441--17091523	39	2.1	39	90	0	130	28	18	16	36	1.93
17093401--17093463	25	2.6	25	83	14	78	49	0	0	50	1.00
17095389--17095446	30	2.0	30	83	10	75	51	3	1	43	1.28
17096356--17096401	22	2.1	22	100	0	92	45	13	21	19	1.84
17097252--17097295	20	2.1	21	95	4	81	45	2	0	52	1.13
17097297--17097321	6	4.2	6	100	0	50	84	0	16	0	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17108231--17108256	2	13.0	2	100	0	52	0	0	50	50	1.00
17119804--17119876	34	2.1	34	85	5	94	21	12	31	34	1.91
17122725--17122758	2	17.0	2	100	0	68	50	0	0	50	1.00
17123079--17123137	3	19.3	3	85	3	82	32	1	30	35	1.68
17130346--17130490	37	4.0	37	90	3	231	22	35	10	32	1.88
17137303--17137494	72	2.6	72	84	9	262	22	34	10	31	1.89
17137303--17137484	37	5.0	37	88	4	271	21	35	11	31	1.89
17146867--17146917	19	2.7	19	81	0	66	11	37	7	43	1.71
17147570--17147651	42	2.0	42	90	0	128	21	23	34	20	1.97
17147897--17147943	22	2.2	22	88	3	69	27	21	21	29	1.98
17148377--17148409	14	2.4	14	100	0	66	24	0	42	33	1.55
17150438--17150601	42	3.9	42	86	0	202	21	32	18	26	1.97
17163636--17163738	38	2.6	40	85	8	133	21	16	38	23	1.92
17163638--17163741	40	2.7	38	85	8	131	22	16	38	23	1.93
17164102--17164176	39	1.9	39	83	5	98	24	18	22	34	1.96
17166358--17166437	34	2.4	34	81	14	94	30	27	13	28	1.94
17166382--17166461	34	2.3	34	89	6	117	35	26	11	27	1.90
17166502--17166588	34	2.5	36	81	3	106	35	32	10	21	1.87
17174688--17174721	17	1.9	17	88	5	50	5	14	5	73	1.21
17175172--17175224	17	3.1	17	81	5	63	32	18	35	13	1.90
17177485--17177523	14	2.7	15	84	8	53	71	0	25	2	0.98
17195730--17195768	2	19.5	2	94	0	69	48	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17195781--17195843	20	3.2	20	90	2	101	30	41	3	25	1.71
17195842--17195960	43	2.8	43	89	2	168	19	37	21	21	1.94
17199814--17199882	19	3.6	19	73	7	68	21	39	15	23	1.92
17199779--17199882	38	2.7	40	83	4	140	23	38	16	22	1.93
17206970--17207090	43	2.8	43	88	2	172	25	19	36	19	1.94
17215542--17215579	15	2.5	15	91	0	58	52	2	26	18	1.58
17218837--17219018	58	3.1	58	87	0	265	24	30	14	30	1.94
17219458--17219482	2	12.5	2	100	0	50	48	0	0	52	1.00
17224422--17224488	27	2.5	27	87	0	98	43	11	11	32	1.78
17224570--17224639	28	2.5	28	83	0	77	40	15	12	31	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97