genome.fa.s9.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  45  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18459110--18459143	4	8.5	4	93	0	59	70	0	29	0	0.87
18461233--18461285	24	2.3	23	93	6	97	37	0	22	39	1.54
18461582--18461660	23	3.5	22	73	3	68	34	29	11	25	1.91
18461540--18461896	45	8.0	45	76	4	159	36	28	11	23	1.90
18461653--18461912	112	2.3	112	83	6	314	35	27	12	24	1.91
18461543--18461980	22	19.6	22	72	5	225	37	27	11	23	1.89
18461921--18462039	61	2.0	60	85	5	159	42	29	9	19	1.82
18462118--18462417	80	3.7	80	82	5	264	39	32	8	20	1.83
18462067--18462421	161	2.2	161	78	6	367	38	32	8	20	1.83
18463094--18463132	17	2.2	19	86	9	55	48	0	5	46	1.24
18462895--18463362	221	2.2	216	87	5	667	45	4	7	42	1.53
18463331--18463404	2	38.0	2	80	10	82	44	1	2	51	1.24
18477376--18477499	49	2.6	49	89	1	196	24	14	35	25	1.93
18480029--18480067	10	3.8	10	80	6	51	25	2	20	51	1.60
18491039--18491087	3	16.7	3	76	19	50	2	26	4	67	1.19
18493853--18494001	35	4.3	33	77	10	113	28	13	19	38	1.90
18493928--18493992	33	2.0	33	87	0	94	23	10	24	41	1.86
18495893--18496892	342	2.9	344	85	5	1272	40	7	7	43	1.62
18495890--18496892	350	2.9	343	85	5	1251	40	7	7	43	1.62
18520230--18520335	53	2.0	53	100	0	212	41	9	15	33	1.79
18524428--18524458	10	3.0	10	90	9	53	87	0	12	0	0.55
18524426--18524469	17	2.6	16	80	20	54	84	0	11	4	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18526682--18526861	42	4.3	41	78	4	171	36	18	11	33	1.87
18526632--18526844	84	2.5	84	81	4	250	34	18	12	34	1.89
18527193--18527385	50	3.8	50	92	4	291	49	24	6	19	1.72
18527193--18527385	101	1.9	102	88	7	295	49	24	6	19	1.72
18527418--18527484	30	2.2	30	100	0	134	46	13	20	19	1.83
18528365--18528422	22	2.6	22	86	0	89	22	5	32	39	1.76
18528521--18528597	22	3.5	22	82	3	91	20	7	35	36	1.82
18528522--18528652	45	2.9	45	80	4	149	22	8	29	39	1.83
18536975--18537029	28	2.0	28	92	0	92	43	18	30	7	1.77
18537977--18538019	24	1.9	23	86	13	63	44	9	27	18	1.80
18538063--18538189	66	1.9	67	85	4	177	37	20	15	26	1.93
18538914--18539015	45	2.3	44	81	8	116	19	7	28	44	1.79
18538937--18539015	23	3.5	22	71	11	61	20	6	29	44	1.76
18538988--18539036	25	2.0	25	87	0	71	20	8	26	44	1.79
18540756--18540787	16	2.0	16	93	0	55	21	18	28	31	1.97
18546107--18546152	14	3.3	14	87	0	65	69	8	0	21	1.15
18546600--18546759	80	2.0	80	97	0	302	29	21	19	29	1.98
18547374--18547405	16	2.0	16	93	0	55	37	31	15	15	1.89
18547547--18547687	22	6.8	22	68	16	86	39	26	12	21	1.89
18547467--18547579	38	2.9	39	69	10	106	38	24	15	22	1.92
18547547--18547687	43	3.4	42	70	14	114	39	26	12	21	1.89
18547737--18547845	38	2.9	37	82	5	112	38	22	11	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18547763--18547845	37	2.2	38	87	6	116	37	22	12	27	1.90
18550442--18550583	42	3.4	42	91	0	230	22	30	23	23	1.99
18551813--18551865	27	2.0	28	85	7	74	30	15	28	26	1.96
18555433--18555566	42	3.2	42	91	0	214	22	31	22	23	1.98
18564254--18564762	255	2.0	255	94	0	883	25	24	14	35	1.93
18568904--18568948	14	3.2	14	87	0	63	22	8	2	66	1.30
18574738--18574774	18	2.0	19	89	5	58	35	5	24	35	1.78
18579627--18579675	20	2.2	22	75	20	57	32	6	6	55	1.49
18579634--18579675	20	2.0	21	90	4	68	33	4	7	54	1.49
18580157--18580188	4	8.0	4	92	0	55	0	28	0	71	0.86
18595426--18595474	15	3.3	15	80	2	64	28	4	28	38	1.75
18595987--18596042	22	2.7	21	83	5	69	35	8	16	39	1.80
18609417--18609536	42	2.9	42	88	0	177	25	32	20	21	1.97
18612488--18612560	36	2.0	36	100	0	146	21	32	5	39	1.77
18625113--18625164	25	2.0	26	85	7	70	42	1	1	53	1.23
18625323--18625371	20	2.4	21	83	10	57	44	4	0	51	1.20
18627138--18627190	21	2.5	21	75	0	52	20	15	24	39	1.91
18627172--18627238	33	2.0	33	91	0	107	28	11	23	35	1.91
18628998--18629107	43	2.6	43	86	2	141	20	36	19	23	1.95
18631460--18631497	20	1.9	20	88	0	58	68	0	0	31	0.90
18632036--18632071	2	18.0	2	100	0	72	50	0	0	50	1.00
18632285--18632321	2	18.5	2	94	0	65	51	0	2	45	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18634582--18634608	2	13.5	2	100	0	54	48	0	0	51	1.00
18645586--18645712	51	2.5	50	89	2	200	32	16	13	37	1.87
18645586--18645712	25	5.0	25	72	9	114	32	16	13	37	1.87
18647071--18647109	20	1.9	21	89	5	62	71	2	2	23	1.10
18649164--18649235	22	3.3	22	96	0	126	16	27	29	26	1.97
18653345--18653383	20	1.9	21	89	5	62	71	2	2	23	1.10
18660816--18660851	2	18.0	2	94	0	63	47	2	0	50	1.15
18663278--18663329	28	1.9	26	88	7	77	36	1	0	61	1.07
18663605--18663640	17	2.1	17	89	0	54	38	5	2	52	1.39
18663653--18663706	23	2.3	23	79	17	67	48	0	0	51	1.00
18667140--18667194	21	2.6	21	85	0	74	25	16	21	36	1.94
18667232--18667289	23	2.5	23	88	0	98	22	10	29	37	1.87
18667301--18667381	22	3.8	21	83	3	99	49	28	7	14	1.70
18670151--18670232	24	3.4	24	91	0	128	46	14	17	21	1.84
18675126--18675162	19	1.9	19	100	0	74	43	29	0	27	1.55
18682304--18682340	13	2.8	13	95	0	65	51	13	0	35	1.41
18684661--18684740	39	2.0	42	85	7	112	26	13	17	42	1.86
18686179--18686235	23	2.5	23	86	8	73	26	12	24	36	1.91
18687560--18687589	15	1.9	16	93	6	53	23	0	3	73	0.98
18687939--18687986	24	2.0	24	87	0	69	6	43	18	31	1.75
18688105--18688241	63	2.2	63	87	0	193	29	16	30	22	1.96
18689805--18689856	26	2.0	26	96	0	95	21	13	7	57	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18692052--18692204	70	2.2	70	95	2	272	31	13	24	30	1.93
18694397--18694431	13	2.6	13	90	4	52	2	20	0	77	0.90
18694397--18694434	17	2.3	16	86	13	51	2	21	0	76	0.91
18694589--18694719	26	5.4	26	70	14	91	19	15	27	38	1.91
18699114--18699413	118	2.6	117	84	2	370	43	29	11	16	1.83
18699407--18699515	54	2.0	54	100	0	218	43	25	11	20	1.84
18699470--18699676	111	1.9	111	86	4	301	45	24	11	18	1.82
18700312--18700371	30	2.0	30	96	0	111	30	28	16	25	1.97
18700924--18701164	103	2.3	103	87	0	331	38	24	11	26	1.88
18700991--18701163	48	3.5	48	76	10	193	38	23	12	26	1.90
18701986--18702020	2	18.0	2	94	5	63	48	0	0	51	1.00
18702299--18702337	2	19.5	2	100	0	78	48	0	0	51	1.00
18710147--18710187	21	1.9	21	90	5	64	51	2	0	46	1.14
18710628--18710675	21	2.2	22	82	14	64	50	2	2	45	1.25
18716894--18716933	21	2.0	21	95	5	73	45	0	7	47	1.31
18727058--18727099	20	2.1	20	95	0	75	21	19	16	42	1.89
18727262--18727325	24	2.7	24	92	0	101	34	7	7	50	1.60
18732838--18732873	11	3.5	11	78	21	51	0	16	19	63	1.30
18743784--18743813	5	6.0	5	92	0	51	40	23	0	36	1.55
18746137--18746184	21	2.3	20	75	10	51	14	20	6	58	1.58
18748279--18748430	37	4.1	37	84	6	202	30	8	35	25	1.86
18763820--18763880	2	30.5	2	76	0	59	47	8	3	40	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18763817--18763880	18	3.4	18	89	4	92	46	9	3	40	1.52
18763916--18764025	43	2.6	43	85	2	141	21	35	18	24	1.95
18766354--18766397	18	2.4	18	96	0	79	38	22	25	13	1.91
18769514--18769551	20	1.9	20	88	0	58	65	10	15	7	1.45
18790125--18790159	14	2.4	14	90	4	52	45	5	5	42	1.51
18790279--18790308	2	15.0	2	100	0	60	50	0	0	50	1.00
18791472--18791508	4	9.2	4	100	0	74	24	0	24	51	1.49
18793270--18793364	34	2.8	34	83	4	111	24	13	27	34	1.93
18793931--18793986	24	2.3	24	93	0	94	46	8	5	39	1.58
18797522--18797609	46	1.9	46	92	0	149	34	17	12	36	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97