genome.fa.s9.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  48  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19446129--19446181	28	1.9	27	88	3	79	33	20	18	26	1.96
19448612--19462543	171	81.7	171	78	5	10940	33	14	14	38	1.86
19448612--19462543	343	40.8	340	77	5	11027	33	14	14	38	1.86
19462586--19464819	172	13.1	169	79	5	2043	39	14	13	33	1.84
19462587--19464821	341	6.5	340	79	5	2080	39	14	13	33	1.84
19462587--19464821	512	4.4	512	83	3	2380	39	14	13	33	1.84
19467044--19467089	21	2.2	20	84	7	56	15	21	6	56	1.61
19467049--19467089	21	1.9	22	90	5	66	17	24	7	51	1.70
19467791--19470859	171	18.0	171	76	8	2356	37	14	13	34	1.85
19467791--19470859	343	9.0	339	75	9	2301	37	14	13	34	1.85
19467813--19470861	677	4.5	677	78	7	2556	37	14	13	34	1.85
19467829--19470898	514	6.0	508	77	7	2381	38	13	13	34	1.85
19473849--19473886	19	2.0	19	94	0	67	42	28	0	28	1.56
19474221--19475080	171	5.0	169	76	6	596	38	13	13	34	1.84
19490816--19490855	21	2.0	21	90	9	66	50	0	0	50	1.00
19493521--19493668	34	4.4	34	86	3	208	31	12	23	32	1.91
19493815--19493869	25	2.2	24	77	3	56	50	16	20	12	1.77
19499230--19499290	2	31.0	2	90	3	97	47	0	1	50	1.10
19499757--19499788	14	2.3	15	89	10	50	53	15	0	31	1.43
19506302--19506354	26	2.0	26	100	0	106	18	26	32	22	1.97
19508515--19508570	21	2.7	21	97	0	103	28	25	8	37	1.86
19518402--19518544	65	2.2	65	100	0	286	34	22	10	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19524357--19524417	27	2.5	23	76	23	63	52	1	0	45	1.10
19529252--19529305	21	2.6	21	85	5	74	14	11	24	50	1.75
19529488--19529516	6	4.8	6	100	0	58	34	0	31	34	1.58
19532944--19533002	25	2.3	25	80	8	66	27	28	18	25	1.98
19562218--19562253	18	1.9	18	88	5	54	30	2	8	58	1.42
19565857--19565886	6	4.8	6	92	8	51	20	0	16	63	1.31
19568285--19568488	80	2.5	80	81	3	248	35	22	9	32	1.86
19569425--19569582	69	2.3	69	83	4	194	27	16	25	30	1.97
19571366--19571424	27	2.1	28	90	3	93	42	1	3	52	1.28
19571394--19571486	42	2.2	42	82	3	116	45	1	2	51	1.20
19571225--19571519	145	2.0	144	83	7	364	41	3	1	53	1.27
19571678--19571740	27	2.6	22	72	25	56	55	1	3	39	1.25
19571713--19571796	40	2.1	39	84	8	107	44	2	1	52	1.21
19571832--19571885	27	2.0	27	85	0	72	44	0	5	50	1.25
19571753--19572026	114	2.4	112	80	8	295	37	0	4	57	1.23
19571996--19572101	41	2.6	40	83	5	140	42	2	0	53	1.22
19572680--19572748	34	2.0	35	86	11	97	37	7	2	52	1.44
19589411--19589586	36	4.9	36	78	2	158	31	14	23	30	1.94
19596298--19596453	63	2.5	62	82	4	179	25	17	30	26	1.98
19600356--19600385	15	2.0	15	93	0	51	30	16	20	33	1.94
19601368--19601410	22	2.0	22	85	0	59	0	25	2	72	0.97
19602511--19602558	19	2.6	18	87	9	62	39	4	0	56	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19610130--19610178	22	2.2	22	88	0	71	0	34	0	65	0.93
19610146--19610179	15	2.4	14	90	5	50	0	29	0	70	0.87
19610137--19610182	22	2.1	22	95	0	83	0	30	0	69	0.89
19611245--19611306	32	1.9	32	96	0	115	50	6	8	35	1.58
19611999--19612028	15	2.0	15	93	0	51	50	6	30	13	1.67
19619431--19620936	751	2.0	752	96	0	2764	31	13	16	38	1.88
19631521--19632755	615	2.0	617	88	1	1861	38	15	13	32	1.86
19637045--19637077	17	1.9	17	88	11	50	42	15	3	39	1.62
19637251--19637394	29	5.0	28	84	7	171	36	13	10	39	1.80
19637229--19637387	59	2.7	58	85	4	203	40	12	9	37	1.76
19648231--19648255	8	3.1	8	100	0	50	36	36	28	0	1.58
19649499--19649531	17	1.9	17	88	11	50	42	15	3	39	1.62
19649695--19649873	28	6.3	28	83	10	195	36	13	10	39	1.78
19649683--19649864	56	3.2	56	83	9	224	38	13	9	38	1.78
19649940--19650033	46	2.0	46	97	0	179	32	10	22	34	1.88
19650776--19650959	101	1.8	100	100	0	359	35	17	11	34	1.86
19659101--19659132	15	2.1	15	94	0	55	37	18	3	40	1.67
19661862--19661915	25	2.2	25	90	6	83	37	5	9	48	1.59
19662927--19663177	68	3.7	68	79	5	238	35	9	18	37	1.83
19682203--19682229	11	2.5	11	100	0	54	55	0	0	44	0.99
19682947--19682987	20	2.0	20	90	9	66	24	29	0	46	1.53
19683432--19683531	2	50.0	2	89	4	148	48	1	2	48	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19688690--19688726	2	18.5	2	100	0	74	51	0	0	48	1.00
19688853--19688896	2	22.5	2	90	4	72	45	2	0	52	1.13
19694296--19694321	12	2.2	12	100	0	52	15	34	7	42	1.75
19696322--19696362	21	1.9	22	90	5	66	51	7	24	17	1.70
19696322--19696366	20	2.2	21	84	11	58	55	6	22	15	1.63
19696320--19696367	21	2.3	20	79	10	60	56	6	22	14	1.61
19699394--19699622	107	2.2	106	83	3	273	36	8	13	41	1.76
19699367--19699643	142	2.0	139	85	6	371	36	7	14	41	1.75
19699374--19699612	35	6.9	35	81	5	261	36	7	13	42	1.73
19705911--19706159	35	7.1	35	82	4	281	36	6	12	43	1.70
19705931--19706159	107	2.2	106	86	3	318	37	7	12	42	1.71
19705911--19706159	71	3.6	69	82	5	297	36	6	12	43	1.70
19705904--19706182	142	2.0	139	87	6	402	37	6	12	43	1.70
19705961--19706182	71	3.1	71	80	4	268	37	7	13	41	1.72
19711856--19711957	38	2.6	40	81	3	118	21	39	18	20	1.93
19712070--19712098	2	15.0	2	92	7	51	51	48	0	0	1.00
19713884--19713927	16	2.7	16	86	10	54	0	27	0	72	0.85
19715283--19715354	33	2.2	33	92	0	117	30	18	19	31	1.95
19715502--19715578	37	2.1	36	90	2	118	29	6	11	51	1.63
19715540--19715721	47	3.9	46	81	13	185	29	8	10	51	1.66
19715536--19715721	94	2.0	92	82	11	227	28	8	10	52	1.66
19725532--19725635	38	2.7	39	81	4	120	21	38	19	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19730877--19730987	47	2.4	47	89	0	168	29	8	11	50	1.67
19732665--19732716	2	26.0	2	100	0	104	50	0	0	50	1.00
19733213--19733295	25	3.3	25	91	5	132	16	20	13	49	1.79
19733287--19733321	16	2.2	16	90	5	54	2	17	0	80	0.84
19733368--19733418	22	2.3	22	96	0	93	7	49	11	31	1.68
19733601--19733673	33	2.2	34	87	2	103	34	20	15	30	1.93
19733601--19733684	33	2.5	34	82	9	100	35	21	15	27	1.94
19733775--19733828	23	2.4	22	75	22	58	48	27	5	18	1.70
19735859--19735913	16	3.0	19	70	25	55	21	1	1	74	1.01
19735859--19735911	19	3.0	18	82	17	67	20	1	1	75	0.99
19735861--19735903	22	1.9	23	90	4	70	20	0	2	76	0.89
19735859--19735913	18	3.2	17	80	19	69	21	1	1	74	1.01
19736203--19736247	24	1.9	23	86	4	63	62	2	4	31	1.27
19736196--19736253	24	2.5	23	77	2	62	65	1	3	29	1.19
19744866--19744898	5	6.8	5	86	6	50	39	18	0	42	1.50
19744933--19744978	15	3.1	15	93	0	74	58	15	2	23	1.48
19746180--19746204	13	1.9	13	100	0	50	48	8	0	44	1.32
19747627--19747664	19	2.0	19	100	0	76	42	26	0	31	1.56
19748339--19748393	26	2.2	24	83	6	65	72	3	12	10	1.24
19752751--19752820	36	1.9	36	88	0	104	32	7	22	37	1.82
19755371--19755452	35	2.3	35	87	4	121	35	18	23	23	1.96
19761266--19761300	2	18.0	2	94	5	63	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19762893--19762949	29	2.0	29	85	0	78	31	10	19	38	1.86
19769225--19769326	37	2.8	37	90	3	170	21	38	9	30	1.86
19769225--19769339	37	3.1	37	86	5	169	22	37	10	29	1.88
19776761--19776797	2	18.5	2	94	0	65	48	0	2	48	1.15
19798009--19798102	37	2.5	37	87	0	152	25	35	9	29	1.88
19800443--19800521	16	5.3	15	73	15	74	64	0	34	1	1.02
19800429--19800483	16	3.0	20	79	20	82	65	0	34	0	0.93
19800443--19800521	32	2.4	32	81	12	90	64	0	34	1	1.02
19800992--19801239	41	6.1	41	88	4	371	23	13	35	27	1.93
19801008--19801265	41	6.4	39	79	12	195	22	15	36	25	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97