genome.fa.s9.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  67  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27071054--27071083	13	2.3	13	100	0	60	6	0	6	86	0.70
27071672--27071760	3	29.7	3	100	0	178	32	0	0	67	0.91
27072014--27072058	21	2.1	21	83	0	54	80	2	6	11	0.99
27072043--27072105	18	3.3	18	73	18	56	80	1	12	4	0.93
27072053--27072105	21	2.7	20	88	8	74	79	1	15	3	0.96
27072042--27072114	29	2.5	29	79	0	83	80	1	10	6	0.95
27072042--27072114	19	3.8	19	80	8	76	80	1	10	6	0.95
27075829--27075909	28	2.9	27	85	8	110	22	22	24	30	1.99
27076091--27076128	19	2.0	19	94	0	67	36	34	0	28	1.58
27077612--27077654	15	2.9	15	92	0	68	37	9	25	27	1.87
27077912--27077999	36	2.5	35	90	3	140	35	7	13	43	1.74
27077933--27078013	36	2.3	36	84	2	101	39	7	13	39	1.73
27083864--27083912	22	2.2	22	100	0	98	24	16	20	38	1.92
27084630--27084755	36	3.6	35	81	11	143	35	4	13	46	1.64
27084669--27084762	36	2.6	36	93	0	152	36	5	12	45	1.65
27087497--27087569	36	2.0	36	97	0	137	65	13	9	10	1.46
27090489--27090646	84	1.9	84	89	2	246	51	12	15	20	1.75
27090616--27090752	70	2.0	70	94	0	238	42	17	9	30	1.81
27092018--27092055	19	2.0	19	89	0	58	28	2	26	42	1.69
27092221--27092280	30	2.1	29	81	6	68	30	8	23	38	1.84
27100492--27100546	18	2.8	19	81	13	51	47	9	0	43	1.35
27102143--27102180	19	2.0	19	89	0	58	31	0	26	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27102346--27102405	30	2.1	29	81	6	68	30	8	23	38	1.84
27106376--27106429	26	2.1	26	82	0	63	3	7	16	72	1.22
27122860--27122938	25	3.0	28	67	22	80	40	8	13	36	1.76
27122860--27122965	51	2.1	51	94	0	185	40	10	13	35	1.78
27123306--27123392	33	2.5	33	78	10	86	52	2	2	42	1.26
27126874--27126913	15	2.7	15	88	0	62	32	0	0	67	0.91
27126964--27126993	9	3.3	9	90	0	51	26	10	20	43	1.83
27127565--27127603	5	7.8	5	100	0	78	79	0	20	0	0.73
27132438--27132485	9	5.3	9	87	0	60	41	20	10	27	1.85
27133684--27133796	54	2.1	54	86	3	156	20	15	14	50	1.78
27142398--27142455	30	1.9	31	82	3	73	37	8	13	39	1.76
27154360--27154445	29	2.9	29	92	3	136	36	15	8	40	1.77
27154530--27154570	21	2.0	21	85	0	55	41	21	12	24	1.87
27154537--27154581	21	2.1	21	87	0	63	33	22	17	26	1.96
27157805--27157841	3	12.7	3	94	5	67	70	0	0	29	0.88
27158585--27158905	159	2.0	158	93	0	543	24	17	11	46	1.81
27159885--27159954	21	3.4	20	84	5	95	51	1	2	44	1.25
27159999--27160110	38	2.9	40	77	17	112	56	0	1	41	1.16
27160173--27160205	15	2.2	15	94	0	57	12	3	0	84	0.72
27160533--27160573	22	2.0	20	90	9	64	43	2	4	48	1.37
27162946--27162999	27	1.9	29	85	14	78	25	7	11	55	1.61
27164341--27164450	48	2.2	48	82	6	123	42	30	7	19	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27165413--27165515	23	4.4	23	76	2	98	25	15	36	22	1.93
27165436--27165934	47	10.7	47	83	2	567	26	17	31	24	1.97
27165575--27165653	23	3.4	23	65	16	63	26	15	30	27	1.96
27165741--27165820	24	3.4	24	70	3	72	23	17	33	25	1.96
27165950--27165993	23	1.9	23	90	0	70	27	18	29	25	1.98
27166529--27166732	31	6.6	31	83	4	241	29	13	20	35	1.91
27168170--27168635	145	3.2	144	81	4	535	28	20	18	31	1.96
27173137--27173161	2	12.5	2	100	0	50	52	0	0	48	1.00
27173387--27173415	2	14.5	2	100	0	58	51	0	0	48	1.00
27184444--27184494	25	2.0	25	92	0	84	37	19	5	37	1.76
27184661--27184757	43	2.3	43	82	7	108	25	15	16	42	1.87
27185179--27185279	43	2.3	43	80	8	107	25	14	17	41	1.88
27185071--27185275	108	1.9	108	82	2	259	25	17	17	39	1.91
27188669--27188707	18	2.2	18	85	0	51	43	15	7	33	1.75
27188969--27189014	18	2.6	18	92	0	74	47	19	10	21	1.80
27196271--27196333	2	32.0	2	90	3	92	49	3	0	46	1.18
27199888--27200011	55	2.3	55	88	0	176	12	13	32	41	1.81
27199996--27200099	46	2.3	46	89	0	154	24	14	29	31	1.94
27203733--27203974	118	2.1	117	80	2	261	25	20	28	24	1.99
27204086--27204195	31	3.5	32	71	6	100	24	20	27	27	1.99
27204315--27204383	16	4.4	16	73	10	52	47	4	8	39	1.54
27204334--27204405	16	4.6	16	75	14	69	52	2	6	37	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27204334--27204405	17	4.6	16	75	11	60	52	2	6	37	1.43
27204344--27204405	29	2.1	30	82	8	74	53	3	6	37	1.43
27204320--27204409	47	1.9	47	84	4	119	53	3	7	35	1.46
27205938--27206205	31	8.6	31	79	4	290	36	21	17	23	1.94
27205938--27206203	93	2.9	93	81	5	331	37	21	17	23	1.94
27208399--27208810	31	13.3	31	86	1	486	36	20	17	25	1.94
27209284--27209343	29	2.1	29	93	0	102	36	35	13	15	1.86
27209323--27209400	23	3.3	24	67	29	69	29	29	17	23	1.97
27209388--27209870	141	3.4	141	82	5	582	23	32	15	27	1.95
27209388--27209870	47	10.3	47	80	5	494	23	32	15	27	1.95
27209797--27209937	70	2.0	70	87	0	201	24	35	13	26	1.92
27209837--27209893	23	2.5	23	82	0	69	22	35	17	24	1.95
27224131--27224173	14	3.1	14	93	0	68	69	6	0	23	1.12
27225358--27225392	18	1.9	18	88	0	52	11	20	14	54	1.70
27229284--27229486	73	2.8	73	89	0	298	38	16	22	22	1.93
27241945--27242141	72	2.7	72	88	0	286	39	17	22	21	1.93
27256412--27256444	13	2.6	13	90	4	50	30	9	24	36	1.86
27258845--27258874	10	2.9	10	95	5	51	63	6	0	30	1.20
27261405--27261462	28	2.1	28	84	9	75	24	22	22	31	1.99
27261516--27261553	20	1.9	20	100	0	76	44	21	5	28	1.73
27262411--27262458	6	7.5	6	82	13	60	14	33	0	52	1.42
27262441--27262511	30	2.4	30	83	9	99	14	28	5	52	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27262413--27262492	15	5.1	15	73	13	56	15	30	2	52	1.55
27268877--27269185	164	1.9	160	94	4	548	45	10	10	34	1.72
27275721--27275886	83	2.0	82	97	1	314	31	9	18	39	1.83
27284921--27284945	2	12.5	2	100	0	50	0	48	0	52	1.00
27286925--27286985	29	2.1	29	96	3	115	27	9	16	45	1.79
27289428--27289467	18	2.2	18	86	0	53	30	2	12	55	1.50
27289792--27289854	32	2.0	31	93	6	101	57	19	12	9	1.62
27295163--27295217	28	2.0	28	92	7	94	21	1	14	61	1.42
27305924--27305957	15	2.2	16	90	10	54	20	2	17	58	1.51
27308989--27309032	21	2.0	22	86	4	63	29	0	6	63	1.20
27316415--27316513	19	5.1	19	66	9	74	20	17	41	21	1.90
27316411--27316513	38	2.6	40	87	6	149	19	16	41	22	1.90
27318232--27318282	20	2.5	20	83	3	66	41	15	17	25	1.89
27319788--27320113	159	2.1	158	97	1	627	53	6	12	26	1.63
27319868--27320109	78	3.1	78	62	14	188	53	5	13	26	1.61
27320102--27320148	15	3.2	15	81	3	60	70	6	0	23	1.10
27324406--27324430	13	1.9	13	100	0	50	44	0	8	48	1.32
27325768--27325809	15	2.9	14	89	10	66	26	0	14	59	1.35
27331907--27331931	13	1.9	13	100	0	50	44	0	8	48	1.32
27338329--27338416	35	2.5	35	85	3	115	20	12	19	47	1.81
27338351--27338428	35	2.2	35	84	4	104	20	11	17	50	1.77
27338643--27338692	15	3.3	15	88	0	73	32	12	24	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27339297--27339344	17	2.8	17	87	0	60	60	12	10	16	1.58
27339744--27339791	24	2.0	24	83	0	60	25	10	18	45	1.81
27342132--27342242	48	2.3	48	82	0	132	22	12	26	38	1.90
27346344--27346406	21	3.0	21	92	0	108	20	26	17	34	1.95
27356559--27356672	35	3.3	34	75	11	106	22	16	14	45	1.84
27363944--27364073	69	1.9	69	85	1	181	31	19	29	20	1.97
27367987--27368157	70	2.4	70	92	1	263	32	12	20	34	1.91
27368042--27368138	23	4.2	23	67	12	54	31	13	18	36	1.90
27368399--27368452	23	2.3	23	80	0	63	22	18	29	29	1.97
27374031--27374078	22	2.2	22	85	7	62	47	20	12	18	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97