genome.fa.s9.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  78  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31033211--31033268	24	2.4	23	73	18	55	32	5	1	60	1.29
31035019--31035073	23	2.4	23	90	0	83	29	12	34	23	1.92
31034981--31035134	81	1.9	81	85	5	213	29	13	32	24	1.94
31035293--31035470	47	3.8	47	76	1	160	28	14	30	26	1.95
31035456--31035499	23	1.9	23	90	0	70	29	15	27	27	1.96
31036068--31036209	31	4.6	31	90	1	214	29	16	19	34	1.94
31037660--31037993	145	2.3	144	83	4	413	30	20	18	31	1.96
31040335--31040747	31	13.3	31	74	2	308	29	27	15	27	1.96
31041700--31041766	24	2.8	24	86	0	89	23	22	29	23	1.99
31044171--31044314	42	3.4	42	81	1	164	27	22	22	27	1.99
31044187--31044302	21	5.5	21	67	15	69	26	25	23	25	2.00
31044491--31044531	21	2.0	21	90	0	64	21	24	2	51	1.60
31049842--31050128	22	12.7	22	75	12	199	36	18	12	32	1.89
31049857--31050095	43	5.3	44	77	7	205	37	18	12	32	1.88
31051015--31051054	21	1.9	21	89	0	62	42	5	2	50	1.37
31052333--31052401	21	3.6	21	66	26	62	21	11	11	55	1.67
31052336--31052409	37	2.0	37	100	0	148	21	8	13	56	1.63
31052526--31052572	23	2.0	23	87	0	67	59	4	14	21	1.52
31052746--31052782	16	2.2	17	86	13	51	37	24	0	37	1.56
31056488--31056517	13	2.3	13	94	0	51	63	6	0	30	1.20
31056608--31056730	64	1.9	64	88	0	183	39	16	11	33	1.84
31056959--31056984	8	3.2	8	100	0	52	26	0	34	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31057009--31057072	27	2.4	27	91	0	101	28	12	20	39	1.89
31063014--31063070	18	3.2	18	74	0	69	26	10	19	43	1.83
31063477--31063511	17	2.1	17	94	0	61	37	11	8	42	1.72
31064445--31064504	22	2.8	22	75	12	61	20	8	1	70	1.22
31064598--31064638	19	2.1	19	90	4	64	17	2	0	80	0.82
31064715--31064753	18	2.2	18	86	4	53	20	2	2	74	1.06
31066522--31066680	84	1.9	83	85	5	214	15	27	32	23	1.95
31066876--31066931	25	2.3	23	87	6	76	0	0	14	85	0.59
31066873--31066931	26	2.4	26	88	8	88	0	0	16	83	0.66
31066877--31066930	21	2.7	19	80	11	63	0	0	14	85	0.61
31066932--31067050	41	3.0	41	76	11	115	47	17	13	21	1.81
31066939--31067238	37	7.9	37	75	8	230	43	18	14	23	1.87
31067280--31067498	116	1.9	116	93	0	375	37	14	23	25	1.92
31079562--31079617	22	2.5	22	82	0	67	19	8	1	69	1.24
31079809--31079870	3	20.0	3	83	3	52	24	1	1	72	1.02
31081748--31081777	7	4.4	7	91	8	53	13	0	0	86	0.57
31081749--31081777	13	2.2	13	100	0	58	13	0	0	86	0.58
31081748--31081791	20	2.2	20	83	0	52	11	2	4	81	0.92
31081747--31081848	11	9.4	10	72	18	55	19	2	2	74	1.08
31081947--31081985	20	2.0	20	85	10	53	58	0	0	41	0.98
31085902--31086001	30	3.3	30	79	5	103	46	7	14	33	1.71
31091281--31091323	17	2.4	17	88	7	59	79	0	4	16	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31091281--31091323	9	4.9	8	81	18	50	79	0	4	16	0.90
31091275--31091323	19	2.7	19	87	6	66	77	0	4	18	0.92
31092064--31092126	22	2.9	22	80	0	63	22	7	22	47	1.76
31092210--31092302	22	4.3	22	80	2	98	44	20	9	25	1.82
31092210--31092329	22	5.5	22	72	9	66	43	20	10	25	1.84
31094309--31094343	15	2.2	16	90	5	54	31	0	0	68	0.90
31103920--31103950	5	6.2	5	92	0	53	38	38	0	22	1.54
31105563--31105661	49	2.0	48	96	1	180	22	8	29	40	1.82
31129763--31129862	50	2.0	50	100	0	200	40	8	24	28	1.83
31146660--31146685	12	2.2	12	100	0	52	38	46	15	0	1.46
31147833--31147867	4	8.5	4	90	3	52	0	28	0	71	0.86
31147837--31147867	16	1.9	16	100	0	62	0	29	0	70	0.87
31151407--31151432	2	13.0	2	100	0	52	0	50	0	50	1.00
31152556--31152620	33	2.0	33	100	0	130	46	4	15	33	1.66
31158310--31158339	2	15.0	2	100	0	60	50	0	50	0	1.00
31158470--31158507	3	12.7	3	100	0	76	65	0	34	0	0.93
31180717--31180741	2	12.5	2	100	0	50	52	48	0	0	1.00
31186382--31186417	4	9.0	4	93	0	63	25	2	25	47	1.65
31186408--31186464	23	2.4	23	94	5	96	22	12	14	50	1.75
31198069--31198113	18	2.5	17	85	10	54	42	2	8	46	1.47
31205808--31205855	22	2.2	22	84	0	60	22	18	10	47	1.79
31205954--31206026	26	2.8	26	97	0	137	9	27	10	52	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31231825--31232073	124	2.0	124	97	0	471	38	20	13	27	1.91
31236593--31236729	74	1.9	73	90	1	220	43	10	5	40	1.62
31238115--31238143	3	9.7	3	100	0	58	65	0	0	34	0.93
31240952--31240986	15	2.4	14	95	4	61	51	0	0	48	1.00
31241041--31241083	12	3.5	12	84	15	61	41	0	2	55	1.12
31241135--31241197	30	2.1	30	82	14	76	20	0	9	69	1.15
31245203--31245316	31	3.7	30	82	4	138	34	9	21	35	1.86
31245203--31245337	62	2.2	62	83	2	164	34	8	22	34	1.85
31245379--31245621	111	2.2	110	84	4	301	32	8	19	39	1.81
31245668--31245750	40	2.0	41	81	6	107	28	12	16	42	1.84
31245757--31245817	32	1.9	32	89	0	95	29	6	31	32	1.83
31245490--31245833	143	2.4	142	83	2	440	31	9	21	37	1.85
31251688--31251777	46	1.9	46	86	4	126	51	12	17	18	1.76
31252495--31252746	31	8.1	30	76	6	164	32	12	21	32	1.91
31252509--31252746	93	2.6	93	80	2	246	33	12	21	31	1.91
31252578--31252766	31	6.1	31	81	0	162	34	12	20	32	1.90
31252778--31253322	143	3.8	143	80	3	594	31	10	22	36	1.87
31253539--31253576	17	2.2	17	90	0	58	34	15	21	28	1.94
31253711--31253755	22	2.1	21	91	4	72	68	8	15	6	1.36
31254554--31254589	19	1.9	19	94	5	65	16	0	5	77	0.94
31262904--31262933	15	2.0	15	93	0	51	36	13	3	46	1.60
31279318--31279518	105	1.9	106	87	1	296	23	17	15	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31298092--31298122	16	1.9	16	93	0	53	22	0	0	77	0.77
31299345--31300905	251	6.3	250	84	4	1799	49	6	10	33	1.63
31299345--31300881	747	2.1	741	85	4	2058	49	6	10	33	1.63
31301704--31301754	26	2.0	25	84	3	66	27	27	25	19	1.99
31314847--31314881	18	2.0	17	88	5	52	31	8	37	22	1.85
31316074--31316112	20	2.0	20	84	0	51	20	12	23	43	1.86
31328368--31328432	2	34.0	2	79	14	75	47	1	3	47	1.27
31328368--31328432	19	3.5	19	83	8	73	47	1	3	47	1.27
31333286--31333331	20	2.2	22	85	14	62	63	0	2	34	1.07
31333473--31333557	32	2.6	32	84	5	98	28	4	0	67	1.11
31340521--31340617	49	2.0	49	95	0	176	40	20	14	24	1.90
31344586--31344627	21	2.0	21	90	4	68	35	7	2	54	1.41
31351182--31351211	15	1.9	15	93	6	51	70	0	13	16	1.18
31353407--31353445	2	20.5	2	84	10	55	51	0	0	48	1.00
31353892--31353951	27	2.2	27	82	5	68	48	1	5	45	1.34
31353963--31354015	20	2.8	20	74	5	56	52	1	0	45	1.11
31361280--31361358	34	2.3	34	97	0	149	44	13	10	31	1.78
31361541--31361576	2	18.0	2	100	0	72	50	0	0	50	1.00
31361787--31361834	17	2.6	17	84	12	60	56	0	0	43	0.99
31363028--31363061	12	2.8	12	86	0	50	76	0	23	0	0.79
31363359--31363396	13	2.7	15	80	12	53	26	0	7	65	1.19
31363604--31363681	15	5.3	15	80	4	70	42	21	0	35	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31363615--31363677	30	2.1	30	84	0	81	42	25	0	31	1.55
31364253--31364305	26	2.0	26	85	10	72	43	0	0	56	0.99
31364261--31364318	27	2.2	26	84	6	73	46	0	0	53	1.00
31367974--31368316	171	2.0	171	98	0	659	36	9	12	40	1.77
31370767--31370828	30	2.1	29	85	8	81	54	0	9	35	1.33
31378806--31378947	27	5.1	27	71	12	83	66	0	2	31	1.04
31378757--31378854	50	2.0	50	80	8	110	65	0	4	30	1.11
31378811--31378878	20	3.3	20	71	18	59	69	0	0	30	0.89
31384223--31384432	41	5.1	40	73	18	146	52	0	2	43	1.22
31384321--31384362	16	2.6	17	81	7	52	61	0	0	38	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97