genome.fa.s9.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  24  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10310536--10310591	28	2.0	28	82	0	67	7	23	3	66	1.33
10314776--10314849	35	2.1	35	87	7	107	59	14	0	25	1.36
10319436--10319478	23	1.9	22	85	4	59	48	23	6	20	1.73
10330318--10330346	2	15.0	2	92	7	51	51	0	0	48	1.00
10331672--10331724	21	2.5	21	71	0	52	54	5	24	15	1.62
10332829--10332869	2	20.5	2	100	0	82	48	0	0	51	1.00
10333542--10333579	20	1.9	20	88	0	58	31	18	15	34	1.92
10339133--10339177	22	2.0	22	84	16	58	53	8	2	35	1.45
10340183--10340207	11	2.3	11	100	0	50	28	0	0	72	0.86
10340314--10340357	19	2.4	19	88	7	65	45	0	4	50	1.22
10350446--10350477	15	2.1	15	100	0	64	25	6	18	50	1.70
10355761--10355792	15	2.1	15	100	0	64	40	6	18	34	1.76
10359901--10360017	2	58.0	2	96	1	216	49	0	0	48	1.07
10361743--10361799	14	4.0	14	80	15	55	42	0	1	56	1.10
10363970--10364028	30	2.0	30	93	0	100	25	13	10	50	1.72
10364850--10364884	17	2.0	17	88	5	52	31	0	0	68	0.90
10367214--10367246	16	2.0	17	88	5	50	15	3	3	78	0.99
10404867--10404912	20	2.3	20	92	0	74	45	19	4	30	1.70
10405452--10405489	15	2.5	15	95	0	67	0	15	0	84	0.63
10406105--10406148	22	2.0	23	86	13	65	65	9	6	18	1.42
10410824--10410878	17	3.1	18	84	10	69	63	3	0	32	1.12
10414243--10414273	15	2.0	16	93	6	55	41	19	6	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10422237--10422324	2	44.0	2	80	4	97	3	44	2	50	1.31
10422891--10422925	3	11.7	3	88	11	54	31	0	0	68	0.90
10432699--10432779	39	2.1	39	97	0	153	27	24	9	38	1.87
10434549--10434597	22	2.2	22	88	0	71	26	6	22	44	1.76
10434608--10434662	21	2.6	21	76	2	56	23	10	21	43	1.84
10434675--10434734	23	2.6	23	78	5	59	36	23	15	25	1.93
10434722--10434822	22	4.6	22	74	6	71	38	25	12	22	1.90
10434789--10434848	21	2.9	21	94	0	111	35	30	18	16	1.93
10437679--10437716	19	2.0	19	100	0	76	42	31	0	26	1.56
10444391--10444495	53	2.0	52	90	1	165	21	16	14	47	1.82
10449237--10449387	75	2.0	75	94	0	266	39	16	14	29	1.88
10452600--10452635	9	4.1	9	92	7	56	83	0	0	16	0.65
10466763--10466801	9	4.3	9	81	12	53	76	0	0	23	0.78
10469032--10469072	15	2.7	16	88	7	59	41	2	21	34	1.67
10469033--10469080	15	3.1	16	79	8	55	43	2	20	33	1.64
10469703--10469735	17	1.9	17	93	0	57	24	15	0	60	1.35
10483079--10483111	16	2.1	16	94	0	57	18	21	24	36	1.95
10485286--10485325	21	1.9	21	85	10	55	30	20	5	45	1.72
10487466--10487493	2	14.0	2	100	0	56	50	50	0	0	1.00
10491534--10491589	18	3.0	17	76	23	51	71	1	26	0	0.96
10491555--10491595	12	3.3	12	82	3	55	65	0	34	0	0.93
10491675--10491714	12	3.2	12	92	7	62	70	0	30	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10491674--10491713	18	2.2	18	90	0	62	72	0	27	0	0.85
10492174--10492210	2	19.5	2	89	10	60	51	0	0	48	1.00
10492701--10492926	60	3.8	60	85	1	276	25	18	29	26	1.98
10502023--10502077	16	3.5	15	77	22	51	69	1	29	0	0.99
10502091--10502125	16	2.2	16	95	5	63	80	0	20	0	0.72
10502100--10502133	11	2.9	12	86	8	52	85	0	14	0	0.60
10502092--10502134	16	2.5	18	81	7	54	83	0	16	0	0.64
10502163--10502275	48	2.4	48	82	7	140	61	7	30	0	1.29
10502239--10502298	20	3.1	19	78	9	59	70	0	26	3	1.03
10502281--10502354	31	2.4	31	86	4	96	52	5	35	6	1.51
10502307--10502368	31	2.0	31	83	0	79	50	9	38	1	1.45
10502386--10502425	20	2.0	21	90	5	64	60	0	37	2	1.11
10502696--10502731	2	18.0	2	94	0	63	47	0	2	50	1.15
10503105--10503306	60	3.4	59	80	6	185	29	18	25	26	1.98
10506065--10506103	18	2.1	19	86	13	55	76	7	10	5	1.13
10507294--10507431	39	3.6	39	89	4	203	28	37	12	21	1.90
10514444--10514673	116	2.0	116	95	0	415	26	19	10	43	1.82
10515756--10515798	12	3.4	13	81	12	54	74	4	9	11	1.20
10521518--10521561	21	2.1	21	83	8	54	52	11	2	34	1.50
10529125--10529174	2	25.0	2	100	0	100	50	0	0	50	1.00
10529657--10529771	39	3.0	38	72	11	101	63	0	3	32	1.17
10529665--10529746	27	3.0	28	77	13	73	64	1	3	30	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10530437--10530474	8	4.8	8	93	0	67	42	10	0	47	1.38
10536900--10536941	2	21.0	2	95	0	75	47	0	2	50	1.14
10536984--10537025	2	21.0	2	95	0	75	47	0	2	50	1.14
10554814--10554928	57	2.0	57	89	0	176	38	12	13	35	1.83
10557826--10557904	30	2.7	30	86	2	115	60	0	1	37	1.05
10559162--10559211	26	2.0	26	84	4	66	72	6	2	20	1.16
10562050--10562086	19	2.0	18	89	5	56	32	5	16	45	1.70
10563748--10563815	33	2.1	33	97	0	127	35	5	22	36	1.78
10568548--10568663	41	2.8	41	94	0	205	31	3	26	37	1.73
10571773--10571904	35	3.9	34	78	13	130	24	10	28	37	1.88
10571779--10571961	67	2.7	66	82	5	217	25	12	26	36	1.91
10582026--10582062	17	2.2	17	90	0	56	32	24	32	10	1.90
10582956--10583067	35	3.3	34	78	7	129	29	11	24	34	1.90
10582972--10583076	32	3.2	32	80	7	129	25	11	25	37	1.90
10582939--10583111	67	2.6	67	83	1	213	28	12	22	36	1.90
10583639--10583697	18	3.4	18	69	21	54	49	1	0	49	1.11
10583631--10583704	34	2.2	32	82	13	96	51	1	0	47	1.09
10585990--10586024	2	17.5	2	93	0	61	48	2	48	0	1.16
10586907--10586950	2	21.5	2	95	4	79	50	0	2	47	1.13
10587493--10587543	2	26.0	2	96	4	95	50	0	0	49	1.00
10587694--10587724	2	15.5	2	93	0	53	45	0	3	51	1.17
10588949--10589057	57	1.9	57	90	0	173	37	11	14	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10603554--10603622	3	22.7	3	73	14	52	26	5	2	65	1.29
10603538--10603615	40	2.0	40	82	5	95	23	5	6	65	1.36
10604219--10604259	16	2.7	16	88	7	59	2	48	0	48	1.14
10604930--10605005	17	5.1	14	77	16	57	21	0	1	77	0.84
10604924--10604999	18	4.5	17	75	18	61	19	0	1	78	0.81
10604925--10605000	11	7.4	10	75	15	57	18	0	1	80	0.79
10604927--10605005	33	2.2	36	82	12	103	20	0	1	78	0.82
10604927--10604991	31	2.0	33	85	5	89	18	0	1	80	0.80
10605469--10605579	32	3.4	32	75	11	116	35	27	12	24	1.92
10605430--10605619	67	2.8	67	85	4	240	35	25	12	25	1.92
10605464--10605622	32	4.7	33	71	12	108	36	27	13	22	1.91
10608269--10608915	329	2.0	328	99	0	1285	39	8	12	38	1.74
10608903--10608937	2	17.5	2	93	0	61	54	0	0	45	0.99
10617140--10617169	6	5.0	6	91	0	51	53	0	46	0	1.00
10621177--10621211	3	11.7	3	87	0	52	0	37	2	60	1.12
10628449--10628482	13	2.5	14	95	4	61	79	0	0	20	0.73
10635574--10635614	2	21.0	2	90	5	66	46	0	2	51	1.14
10636287--10636312	11	2.4	11	100	0	52	0	0	7	92	0.39
10636656--10636689	2	17.0	2	100	0	68	50	0	0	50	1.00
10640069--10640342	137	2.0	137	98	0	530	47	15	10	26	1.78
10647957--10647982	4	6.5	4	100	0	52	26	23	23	26	2.00
10663162--10663200	15	2.6	14	84	8	51	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10663666--10663711	24	2.0	23	83	8	58	60	2	26	10	1.41
10664944--10664978	2	17.5	2	93	0	61	0	45	0	54	0.99
10666990--10667064	22	3.5	22	83	1	98	25	5	18	50	1.68
10667114--10667155	22	1.9	22	95	0	75	42	33	4	19	1.72
10667140--10667222	22	3.8	22	72	3	69	46	19	6	27	1.73
10667592--10667639	9	5.3	9	79	0	51	43	16	8	31	1.78
10673943--10673974	3	10.7	3	100	0	64	31	0	0	68	0.90
10676993--10677054	31	2.0	30	90	3	97	35	4	14	45	1.66
10679420--10679501	2	41.5	2	78	16	73	45	3	2	47	1.33
10683386--10683429	20	2.2	20	100	0	88	36	25	13	25	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97