genome.fa.s9.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  92  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36307006--36307061	23	2.4	23	82	11	69	60	1	0	37	1.07
36306965--36307054	15	6.4	15	70	20	54	60	2	0	37	1.09
36307423--36307487	15	4.6	15	71	21	59	47	1	0	50	1.10
36307431--36307515	26	3.4	24	80	15	75	44	1	1	52	1.16
36307423--36307541	41	2.9	41	80	9	120	43	0	0	54	1.11
36307455--36307522	15	4.8	15	75	17	56	41	0	1	57	1.08
36307594--36307667	8	9.5	8	75	11	57	55	0	0	44	0.99
36307587--36307667	31	2.6	31	96	0	144	55	0	0	44	0.99
36308018--36308062	23	2.0	23	86	8	65	51	2	40	6	1.41
36333302--36333349	21	2.3	20	76	13	53	45	2	2	50	1.25
36346944--36347067	65	1.9	65	88	0	185	27	16	16	38	1.91
36349423--36349458	9	4.3	9	80	20	51	0	52	0	47	1.00
36349678--36349718	21	2.0	21	85	9	57	9	56	0	34	1.32
36351452--36351558	53	2.0	53	98	0	205	37	26	7	28	1.83
36368067--36368100	16	2.1	17	88	5	52	26	0	11	61	1.30
36370164--36370204	21	2.0	21	90	4	66	17	0	12	70	1.16
36372908--36372941	2	16.5	2	87	6	50	2	44	2	50	1.32
36372941--36372976	13	2.8	13	91	4	56	55	0	0	44	0.99
36375511--36375551	22	1.9	22	85	5	57	53	4	12	29	1.58
36377126--36377326	101	2.0	101	85	3	271	40	9	7	42	1.65
36377278--36377353	26	2.8	26	75	11	73	47	3	9	39	1.54
36378556--36378608	27	2.0	27	92	0	88	16	18	37	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36380470--36380506	8	4.6	8	100	0	74	51	10	24	13	1.73
36399295--36399324	3	10.0	3	100	0	60	66	0	0	33	0.92
36402596--36402736	70	2.0	70	90	1	221	35	7	16	40	1.77
36402866--36402920	28	2.0	28	92	0	92	32	16	10	40	1.83
36402888--36403071	102	1.8	102	91	0	305	35	10	11	42	1.76
36402888--36403094	102	2.0	101	87	3	299	36	10	10	42	1.74
36406879--36406903	13	1.9	13	100	0	50	48	0	32	20	1.50
36407131--36407187	29	2.0	29	93	6	98	43	10	29	15	1.80
36407131--36407198	29	2.3	29	87	9	86	45	8	27	17	1.78
36417940--36417973	14	2.5	13	86	9	50	11	0	2	85	0.71
36435611--36435652	13	3.0	14	86	6	50	38	4	0	57	1.20
36444464--36444568	2	53.5	2	82	11	128	2	52	0	43	1.16
36448117--36448141	2	12.5	2	100	0	50	52	0	0	48	1.00
36461189--36461228	21	1.9	21	100	0	80	40	5	7	47	1.54
36474002--36474064	31	2.0	31	100	0	126	42	12	19	25	1.86
36476983--36477017	16	2.3	15	90	5	52	65	0	0	34	0.93
36477045--36477093	6	7.8	6	86	6	62	20	2	0	77	0.87
36477052--36477103	25	2.1	25	82	7	61	17	5	0	76	0.97
36478024--36478086	24	2.8	23	74	9	58	26	0	7	65	1.20
36480134--36480198	25	2.6	25	97	0	121	18	4	24	52	1.64
36484938--36485003	31	2.2	28	80	15	71	65	1	3	30	1.17
36491254--36491285	2	16.0	2	100	0	64	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36498951--36498990	21	2.0	21	90	5	64	60	0	0	40	0.97
36500463--36500759	69	4.3	69	83	3	348	37	7	13	42	1.72
36500496--36500759	137	1.9	139	86	3	381	38	6	13	41	1.71
36500710--36500808	49	2.0	49	86	0	135	27	5	18	49	1.68
36514864--36514924	16	4.1	16	72	20	60	52	4	4	37	1.45
36514855--36514916	27	2.3	27	94	2	108	53	3	8	35	1.47
36515667--36515699	15	2.1	17	88	11	52	42	0	0	57	0.98
36515822--36515878	28	2.1	28	86	3	80	21	3	14	61	1.47
36517187--36517246	29	2.0	30	81	9	70	43	1	8	46	1.43
36518273--36518310	2	19.5	2	94	5	69	0	47	0	52	1.00
36522648--36522723	33	2.3	33	88	0	116	35	34	13	17	1.88
36550472--36550545	39	1.9	39	86	10	109	14	21	10	52	1.72
36554447--36554481	15	2.5	14	90	9	54	60	20	0	20	1.37
36556984--36557010	14	1.9	14	100	0	54	48	29	0	22	1.51
36560076--36560154	39	2.0	39	100	0	158	41	15	5	37	1.69
36561509--36561548	15	2.7	15	84	0	62	5	37	20	37	1.74
36563563--36563603	2	20.5	2	94	0	73	51	2	0	46	1.14
36563979--36564012	17	2.0	17	88	0	50	52	5	2	38	1.41
36569606--36569790	92	2.0	92	95	0	334	36	19	12	30	1.90
36573949--36573980	15	2.2	15	94	5	57	37	6	18	37	1.76
36579509--36579614	49	2.1	49	82	5	133	50	18	9	20	1.74
36582526--36582581	14	4.2	13	80	11	60	66	1	3	28	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36585551--36585582	16	2.0	16	100	0	64	18	12	12	56	1.67
36587518--36587567	23	2.2	23	96	3	93	50	0	0	50	1.00
36587550--36587624	26	2.8	27	73	4	80	40	8	8	44	1.63
36587507--36587693	27	7.1	27	75	7	125	44	6	3	45	1.47
36589122--36589163	15	2.8	15	88	0	57	0	38	19	42	1.51
36591755--36591796	15	2.7	15	86	13	59	64	0	4	30	1.14
36593158--36593183	11	2.4	11	100	0	52	92	0	7	0	0.39
36594020--36594093	27	3.1	22	75	19	67	44	0	0	55	0.99
36594017--36594076	27	2.2	27	80	14	70	38	0	0	61	0.96
36594196--36594282	8	10.6	8	69	12	52	44	1	1	52	1.15
36594202--36594270	26	2.6	26	84	9	77	46	1	1	50	1.19
36594289--36594321	16	2.0	17	88	5	50	0	21	0	78	0.75
36609113--36609158	22	2.0	23	87	4	67	36	10	21	30	1.88
36609335--36609393	30	2.0	30	86	6	84	20	10	28	40	1.85
36614388--36614416	11	2.7	11	94	5	51	55	0	0	44	0.99
36615431--36615455	4	6.2	4	100	0	50	24	24	24	28	2.00
36618018--36618060	23	1.9	23	90	4	70	58	6	0	34	1.25
36631980--36632059	23	3.4	23	82	6	99	52	0	1	46	1.08
36644044--36644385	175	2.0	174	97	0	630	37	11	12	38	1.79
36647176--36647220	17	2.8	17	90	6	67	44	0	4	51	1.21
36647857--36647907	17	2.9	17	80	8	50	49	1	3	45	1.32
36654201--36654237	18	2.1	18	90	5	58	59	10	0	29	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36661637--36661686	25	2.0	25	100	0	100	28	24	4	44	1.72
36662634--36663039	86	4.7	86	79	8	331	37	9	7	45	1.66
36664544--36664572	2	14.5	2	100	0	58	48	0	51	0	1.00
36682775--36682837	20	3.2	19	78	10	65	31	1	0	66	1.01
36683560--36683595	7	4.9	7	93	6	54	83	2	0	13	0.76
36683866--36683899	15	2.2	16	89	5	52	76	0	2	20	0.92
36683426--36684043	308	2.0	309	93	2	1062	50	9	11	29	1.69
36684214--36684290	36	2.1	35	92	4	127	28	2	7	61	1.37
36688183--36688208	2	13.0	2	100	0	52	50	0	0	50	1.00
36691485--36691516	3	11.0	3	93	6	57	0	34	0	65	0.93
36704806--36704853	24	2.0	25	84	8	64	35	14	4	45	1.64
36711701--36711758	29	1.9	30	86	6	82	56	3	3	36	1.33
36715475--36715499	2	12.5	2	100	0	50	48	0	0	52	1.00
36728649--36728687	12	3.2	12	85	0	51	48	15	0	35	1.45
36730405--36730430	11	2.4	11	100	0	52	38	0	7	53	1.30
36731428--36731481	4	13.0	4	81	14	65	74	0	0	25	0.83
36731429--36731485	19	2.7	22	74	20	59	75	0	0	24	0.80
36731429--36731489	25	2.4	25	89	10	90	75	0	0	24	0.80
36731428--36731481	17	3.2	18	82	17	80	74	0	0	25	0.83
36731430--36731495	17	3.7	18	79	18	75	75	0	0	24	0.80
36731428--36731489	21	3.0	21	82	15	76	74	0	0	25	0.82
36731684--36731728	15	3.1	14	80	6	54	80	15	4	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36740028--36740079	26	1.9	28	84	7	72	46	0	1	51	1.12
36743543--36743588	21	2.1	23	84	8	60	43	6	2	47	1.41
36745277--36745349	17	3.9	18	83	16	96	16	1	0	82	0.75
36745290--36745350	28	2.2	28	93	0	104	14	1	0	83	0.72
36745277--36745349	9	7.9	9	79	14	78	16	1	0	82	0.75
36746677--36746753	39	2.0	39	97	0	145	19	18	29	32	1.95
36756714--36756774	30	2.0	30	100	0	122	44	13	13	29	1.81
36757434--36757481	21	2.3	20	78	3	51	52	4	8	35	1.51
36761879--36761944	34	1.9	34	96	0	123	39	21	21	18	1.93
36763384--36763414	8	3.9	8	95	0	53	0	41	6	51	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97