genome.fa.s9.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  47  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19059520--19059652	65	2.0	65	83	8	164	36	21	16	24	1.94
19067568--19067619	20	2.6	20	84	0	77	44	13	30	11	1.79
19069428--19069720	151	1.9	152	82	8	364	34	13	14	37	1.86
19069584--19070355	172	4.6	170	78	8	752	33	13	13	38	1.84
19069584--19070355	165	4.6	164	77	9	664	33	13	13	38	1.84
19070860--19070909	16	3.3	15	91	8	75	70	4	0	26	1.05
19071186--19071235	11	4.2	12	82	17	52	76	0	24	0	0.80
19071188--19071239	16	3.5	16	73	26	60	73	0	26	0	0.84
19071459--19071524	34	2.0	33	85	8	89	33	9	27	30	1.88
19073748--19076219	171	14.6	170	76	6	1941	34	13	13	38	1.83
19073680--19076149	340	7.3	336	78	6	2069	34	13	13	38	1.83
19088858--19088894	18	2.1	18	94	0	65	0	27	2	70	1.01
19088855--19088902	18	3.0	15	82	17	53	0	29	2	68	1.01
19095671--19095700	16	1.9	15	93	6	51	23	0	10	66	1.21
19101279--19101303	13	1.9	13	100	0	50	44	0	8	48	1.32
19107087--19107287	73	2.8	73	84	6	257	23	18	17	39	1.92
19113565--19113606	16	2.6	16	81	7	50	21	2	4	71	1.16
19118410--19118440	16	1.9	16	93	0	53	35	0	64	0	0.94
19118486--19118525	2	20.0	2	84	0	53	47	0	52	0	1.00
19119758--19119835	40	2.0	39	82	7	95	19	19	24	37	1.94
19132330--19132369	19	2.0	21	85	9	57	0	37	5	57	1.21
19132546--19132838	146	2.0	146	89	1	453	26	21	12	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19134851--19134990	48	2.9	48	87	2	192	28	38	21	11	1.88
19140353--19140419	20	3.3	20	82	16	68	43	0	4	50	1.22
19144996--19145151	29	5.4	29	82	9	178	41	10	8	39	1.70
19144996--19145154	57	2.8	57	85	5	205	40	11	8	39	1.71
19144988--19145151	87	1.9	87	85	2	231	39	10	8	41	1.71
19150977--19151074	35	2.6	37	82	9	128	29	10	24	35	1.88
19150977--19151094	40	3.2	36	73	17	98	29	8	24	37	1.85
19159894--19159964	22	3.2	22	72	23	69	18	4	2	74	1.10
19161609--19161656	5	9.0	5	86	13	53	72	0	0	27	0.84
19161605--19161661	23	2.5	22	83	10	71	71	0	0	28	0.86
19161607--19161656	15	3.1	16	81	18	59	72	0	0	28	0.86
19172558--19172582	2	12.5	2	100	0	50	0	52	0	48	1.00
19173607--19173648	19	2.2	19	86	4	57	7	7	14	71	1.29
19173963--19174024	26	2.5	25	85	12	76	32	22	9	35	1.87
19178498--19178545	2	24.0	2	100	0	96	50	0	0	50	1.00
19179304--19179364	27	2.3	27	85	5	79	13	3	42	40	1.60
19179400--19179479	39	2.1	39	88	4	117	16	13	45	25	1.84
19183585--19183641	22	2.5	23	88	5	89	29	12	35	22	1.91
19183608--19184221	47	13.1	47	81	2	612	27	15	31	25	1.96
19183795--19184012	23	9.3	23	62	11	75	27	16	30	25	1.97
19183644--19184221	141	4.1	141	90	1	788	27	15	30	26	1.96
19184862--19184969	32	3.5	31	87	7	148	26	17	19	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19189243--19189587	145	2.4	144	84	3	426	29	19	18	31	1.96
19191668--19192117	117	3.9	117	87	2	582	27	29	19	23	1.98
19192054--19192175	55	2.2	55	85	0	154	27	28	21	22	1.99
19199100--19199208	31	3.5	30	83	2	128	36	16	18	28	1.92
19199398--19199519	61	2.0	63	85	3	167	35	11	31	21	1.89
19202958--19202983	13	2.0	13	100	0	52	30	15	38	15	1.88
19207637--19207835	72	2.8	72	80	3	204	25	19	20	35	1.96
19216365--19216498	32	4.0	34	72	10	107	25	12	26	35	1.92
19216368--19216542	67	2.6	67	83	7	223	26	12	25	36	1.91
19216368--19216515	32	4.5	32	71	12	102	24	12	26	37	1.90
19223293--19223324	16	1.9	17	93	6	57	56	0	25	18	1.42
19226240--19226354	40	2.9	39	87	5	151	20	39	20	20	1.93
19226469--19226501	2	16.5	2	93	0	57	48	3	0	48	1.17
19232831--19232861	2	15.0	2	93	6	53	48	3	0	48	1.17
19243510--19243577	34	2.0	34	82	0	82	29	27	11	30	1.92
19249617--19249647	8	3.9	8	100	0	62	64	12	0	22	1.27
19253855--19253893	19	2.1	19	90	0	60	79	0	15	5	0.90
19260983--19261129	35	4.2	35	86	1	188	30	11	33	24	1.91
19265316--19265411	35	2.7	35	86	1	120	35	3	16	44	1.64
19266728--19266826	36	2.8	36	75	4	103	38	22	9	30	1.85
19269574--19269627	17	3.1	17	78	2	54	25	1	0	72	0.95
19276676--19276722	17	2.8	16	87	9	67	23	27	27	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19283043--19283215	67	2.6	67	86	3	233	25	9	26	38	1.87
19283043--19283191	35	4.5	32	72	12	120	22	8	27	40	1.83
19283748--19283775	3	9.3	3	100	0	56	32	0	0	67	0.91
19288334--19288383	25	2.0	25	100	0	100	48	12	12	28	1.76
19296678--19296734	2	28.0	2	85	3	78	49	0	1	47	1.12
19296663--19296720	27	2.1	28	81	15	77	46	0	5	46	1.25
19306497--19306558	26	2.4	26	94	0	106	32	40	3	24	1.71
19306607--19306775	82	2.1	82	96	0	311	20	39	18	21	1.92
19306875--19307039	42	3.9	42	95	0	294	22	33	22	21	1.97
19310465--19310570	35	3.1	35	78	6	117	36	14	12	36	1.83
19311969--19312021	28	1.9	28	85	11	74	32	24	18	24	1.97
19314555--19314605	15	3.4	15	84	10	68	27	1	19	50	1.58
19326832--19326860	15	1.9	15	100	0	58	31	6	6	55	1.53
19329180--19329207	2	14.0	2	100	0	56	50	0	0	50	1.00
19330546--19330579	17	2.0	17	88	11	52	47	14	0	38	1.45
19330722--19330786	28	2.3	28	86	5	87	38	10	9	41	1.72
19354388--19354441	28	1.9	28	92	0	90	33	16	11	38	1.84
19356884--19356963	37	2.2	37	86	2	108	35	10	18	36	1.85
19359128--19359206	38	2.1	38	97	0	149	41	12	25	20	1.87
19368433--19368641	104	2.0	104	93	0	355	23	5	21	49	1.71
19370382--19370415	10	3.4	10	83	0	50	38	2	17	41	1.65
19370877--19370918	19	2.2	19	83	8	50	40	9	7	42	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19380389--19380658	135	2.0	134	98	0	522	43	17	6	31	1.74
19380663--19380725	20	3.2	20	88	2	92	30	38	3	28	1.73
19380728--19380918	43	4.4	43	86	2	251	18	36	21	23	1.95
19380729--19380918	86	2.2	86	91	1	301	18	36	21	23	1.95
19388835--19388867	2	16.5	2	100	0	66	51	0	0	48	1.00
19393943--19393989	22	2.1	22	92	0	76	17	25	21	36	1.94
19397640--19397712	25	2.9	24	73	13	74	12	30	17	39	1.87
19397641--19397721	27	3.1	27	80	3	85	9	28	17	44	1.80
19397707--19397768	5	12.6	5	83	6	74	1	20	1	75	0.97
19398110--19398151	22	1.9	22	90	0	66	30	30	9	28	1.89
19398353--19398388	2	18.0	2	100	0	72	50	0	0	50	1.00
19400652--19400701	22	2.3	23	82	10	68	14	30	4	52	1.59
19403068--19403652	171	3.4	169	81	5	669	37	14	13	35	1.85
19405975--19407264	171	7.5	171	83	2	1485	39	13	13	33	1.84
19405980--19407264	514	2.5	512	84	3	1612	39	13	13	33	1.84
19407797--19407856	30	2.1	29	81	6	68	30	5	21	43	1.74
19418920--19419747	172	4.8	171	83	3	1044	39	13	14	33	1.84
19427923--19428915	172	5.8	172	87	3	1318	40	12	13	33	1.82
19431933--19436951	171	29.3	170	83	4	5640	38	13	14	33	1.85
19436948--19437783	171	4.9	171	79	5	797	35	14	13	37	1.85
19437034--19437783	341	2.2	337	82	4	886	34	14	13	36	1.86
19439565--19439982	171	2.5	171	79	7	490	32	14	14	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19440630--19440655	11	2.4	11	100	0	52	80	0	0	19	0.71
19441293--19441410	34	3.5	34	82	0	137	33	13	18	33	1.90
19441585--19441640	23	2.5	22	83	13	69	75	0	21	3	0.96
19441608--19441651	16	2.6	17	82	13	56	77	0	20	2	0.88
19441643--19441755	25	4.5	25	89	0	163	48	14	21	15	1.80
19441722--19441783	31	2.0	32	87	3	90	48	12	22	16	1.80
19443963--19445082	171	6.6	169	81	4	1154	32	15	14	37	1.88
19443963--19445730	342	5.3	335	74	8	1327	32	15	14	37	1.88
19443968--19445082	513	2.2	511	84	2	1432	32	15	14	37	1.88
19445193--19445738	171	3.2	169	75	4	504	31	15	13	39	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97