genome.fa.s9.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  50  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20174040--20175139	503	2.2	504	93	0	1853	47	7	12	33	1.68
20176516--20176553	10	3.6	11	82	10	53	23	0	21	55	1.44
20177923--20177968	20	2.3	20	88	0	65	30	2	23	43	1.66
20177932--20177969	20	1.9	20	94	0	67	31	0	28	39	1.57
20182344--20182383	15	2.7	15	88	3	55	25	2	17	55	1.55
20186129--20186174	19	2.4	20	82	10	60	56	0	0	43	0.99
20191500--20191550	24	2.1	25	82	10	61	58	0	0	41	0.98
20191729--20191766	20	1.9	20	84	10	51	44	2	2	50	1.30
20191799--20191832	17	2.0	17	88	0	50	76	2	0	20	0.92
20199900--20199939	19	2.1	20	81	13	57	50	0	2	47	1.14
20200750--20200936	94	2.0	93	96	2	340	29	13	12	43	1.81
20201682--20201706	13	1.9	13	100	0	50	44	0	8	48	1.32
20203687--20203791	54	1.9	54	88	0	156	27	40	12	19	1.87
20212467--20212519	28	1.9	27	84	3	70	30	20	16	32	1.95
20213285--20213483	99	2.0	98	99	0	389	39	20	14	26	1.90
20216271--20216343	35	2.1	34	85	7	94	28	27	10	32	1.91
20216332--20216431	32	3.0	31	76	13	110	39	22	14	25	1.91
20216318--20216431	35	3.4	33	77	10	115	38	24	12	24	1.90
20224254--20224368	43	2.7	43	87	0	158	22	20	36	20	1.95
20224655--20224714	21	2.8	22	75	7	61	35	20	23	21	1.96
20226115--20226276	77	2.1	75	82	7	193	43	12	5	38	1.66
20229138--20229239	40	2.8	36	85	8	127	24	41	13	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20229357--20229384	2	14.0	2	100	0	56	50	0	0	50	1.00
20233036--20233094	3	20.7	3	77	10	52	32	40	1	25	1.66
20233036--20233103	23	3.1	23	85	12	99	30	41	2	25	1.70
20233038--20233091	20	2.8	20	88	2	83	31	40	1	25	1.66
20233089--20233220	43	3.1	43	86	2	167	21	38	18	21	1.93
20238461--20238585	43	2.9	43	80	2	144	20	36	19	24	1.95
20247496--20247753	29	9.0	29	81	7	276	37	12	9	40	1.76
20247506--20247753	57	4.3	57	83	5	302	38	12	9	39	1.75
20251394--20251448	20	2.8	20	80	0	65	27	18	18	36	1.94
20252624--20252714	30	3.0	30	90	1	137	25	20	10	42	1.85
20266493--20266569	34	2.3	34	100	0	154	20	27	31	20	1.98
20266929--20267034	38	2.7	39	82	10	137	20	15	39	24	1.91
20276890--20277017	43	3.0	43	81	0	157	24	18	34	22	1.96
20287186--20287396	36	5.7	36	73	14	162	28	40	10	19	1.86
20287225--20287396	73	2.3	77	85	5	235	28	41	10	19	1.85
20287188--20287402	109	1.9	109	85	8	290	28	40	11	19	1.86
20289216--20289263	19	2.6	18	84	12	62	10	31	10	47	1.71
20290143--20290206	19	3.4	19	68	8	58	21	17	40	20	1.91
20291739--20291790	20	2.6	20	96	0	95	36	0	19	44	1.51
20295339--20295363	3	8.3	3	100	0	50	0	32	0	68	0.90
20296246--20296281	2	18.0	2	88	0	54	47	2	2	47	1.31
20305536--20305688	76	2.0	75	96	2	288	23	7	22	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20306101--20306212	43	2.6	42	82	9	129	25	15	35	23	1.94
20310423--20310465	2	21.5	2	100	0	86	51	0	0	48	1.00
20310793--20310838	21	2.2	21	92	7	76	26	28	19	26	1.99
20318676--20318856	43	4.2	43	84	6	226	28	17	30	23	1.97
20338679--20338833	43	3.6	43	87	5	188	25	19	32	21	1.97
20339080--20339138	22	2.7	22	89	5	84	32	25	20	22	1.98
20339944--20339970	13	2.1	13	100	0	54	44	0	22	33	1.53
20340475--20340529	25	2.2	25	90	0	83	25	27	16	30	1.96
20342041--20342080	19	2.1	19	85	0	53	2	30	0	67	1.04
20342303--20342333	15	2.1	15	93	0	53	9	32	0	58	1.31
20345875--20345900	13	2.0	13	100	0	52	46	0	7	46	1.31
20347100--20347140	15	2.7	16	88	7	59	26	2	19	51	1.59
20347096--20347141	15	3.1	15	81	9	58	23	2	17	56	1.52
20347176--20347210	5	7.2	5	87	6	54	40	2	20	37	1.67
20347175--20347211	14	2.6	14	86	4	56	37	5	21	35	1.77
20356906--20357074	68	2.4	71	83	12	231	28	31	18	21	1.97
20359579--20359771	55	3.5	55	92	0	314	27	37	12	22	1.91
20365626--20365796	80	2.2	80	94	1	299	37	15	17	29	1.90
20371058--20371124	29	2.2	29	86	5	89	28	10	16	44	1.80
20385425--20385472	20	2.4	20	79	6	53	25	4	10	60	1.47
20387255--20387412	63	2.5	63	87	0	217	26	32	17	22	1.96
20391554--20391618	25	2.7	24	77	13	69	10	29	16	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20391575--20391622	25	1.9	25	91	0	78	12	22	16	47	1.80
20391635--20391670	18	1.9	18	88	5	54	0	36	0	63	0.94
20391821--20392054	91	2.6	90	84	4	299	35	29	12	21	1.91
20392268--20392313	18	2.3	22	85	14	64	6	19	0	73	1.04
20392280--20392330	22	2.3	21	78	15	50	11	19	0	68	1.20
20400022--20400059	19	2.0	19	100	0	76	26	0	31	42	1.56
20401292--20401316	13	1.9	13	100	0	50	44	0	8	48	1.32
20403900--20403939	15	2.7	15	88	11	57	0	22	2	75	0.93
20407159--20407198	21	1.9	21	89	0	62	42	5	2	50	1.37
20412930--20412969	19	2.2	19	90	4	64	40	2	0	57	1.12
20413065--20413096	11	2.9	11	95	0	55	31	0	0	68	0.90
20415138--20415304	60	2.8	60	82	5	205	28	22	21	27	1.99
20415262--20415307	21	2.2	21	88	7	67	28	19	28	23	1.98
20415525--20415563	2	19.0	2	84	5	51	46	2	2	48	1.29
20425398--20425578	38	4.7	38	79	4	182	22	19	36	22	1.95
20425436--20425578	40	3.6	40	81	3	200	21	19	36	22	1.95
20425398--20425574	78	2.3	78	97	0	336	21	18	37	22	1.94
20435601--20435761	55	2.9	55	88	0	250	26	36	14	21	1.93
20442615--20442740	42	3.0	42	85	1	144	25	19	34	20	1.96
20446419--20446459	2	20.5	2	100	0	82	0	48	0	51	1.00
20457436--20457666	115	2.0	115	100	0	462	32	14	18	35	1.91
20467715--20467850	67	2.0	67	87	2	193	26	11	24	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20467736--20467857	35	3.6	35	73	9	117	30	11	25	32	1.91
20470148--20470224	34	2.3	34	86	0	100	24	11	24	38	1.89
20470164--20470253	34	2.6	34	82	0	90	32	6	26	34	1.83
20471334--20471369	18	1.9	19	88	5	56	27	36	8	27	1.86
20477975--20478039	30	2.2	29	81	5	69	29	7	21	41	1.81
20481226--20481264	19	2.1	19	85	0	51	66	2	25	5	1.25
20481387--20481479	34	2.7	34	85	3	125	21	13	29	35	1.92
20481571--20481657	34	2.5	35	78	12	99	37	16	21	24	1.93
20481571--20481643	35	2.1	34	82	9	87	39	16	21	21	1.92
20481786--20481847	5	12.6	5	94	1	108	79	0	20	0	0.74
20481883--20481942	25	2.4	24	84	13	77	51	10	23	15	1.72
20482032--20482063	15	2.1	15	100	0	64	25	6	18	50	1.70
20485948--20486005	30	1.9	30	93	6	100	34	13	5	46	1.66
20486071--20486146	33	2.3	33	86	4	109	32	13	19	34	1.90
20486271--20486346	29	2.6	29	80	17	86	46	7	17	28	1.76
20489809--20489833	13	1.9	13	100	0	50	24	16	20	40	1.91
20503798--20503845	23	2.0	24	84	4	62	62	0	18	18	1.33
20504060--20504103	23	1.9	23	90	0	70	15	29	9	45	1.77
20507770--20507978	37	5.3	38	78	18	205	28	10	37	23	1.87
20507822--20507851	13	2.3	13	100	0	60	20	10	53	16	1.71
20507785--20507888	50	2.1	50	94	0	181	26	9	42	21	1.83
20509447--20509633	73	2.6	74	82	3	227	36	16	24	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20516827--20516970	73	2.0	73	87	2	209	36	18	24	21	1.95
20520457--20520527	35	2.0	35	83	0	88	29	9	28	32	1.89
20529628--20529745	43	2.8	43	81	3	132	22	20	34	22	1.96
20529744--20529823	17	4.8	17	88	7	112	22	3	43	30	1.70
20533447--20533472	13	2.0	13	100	0	52	46	0	53	0	1.00
20544055--20544150	38	2.5	38	89	3	138	20	42	15	20	1.89
20545692--20545804	43	2.6	43	83	5	131	23	16	37	23	1.94
20546186--20546227	21	2.0	21	90	0	66	35	19	28	16	1.93
20550297--20550343	25	1.9	24	86	4	67	21	14	34	29	1.93
20558619--20558659	2	20.5	2	100	0	82	51	48	0	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97