genome.fa.s9.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  95  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37908779--37908810	14	2.3	14	94	0	55	78	0	21	0	0.76
37912838--37912867	11	2.7	11	94	0	51	46	0	0	53	1.00
37914196--37914222	4	6.8	4	100	0	54	22	0	0	77	0.76
37916216--37916384	86	2.0	86	83	0	212	47	18	8	26	1.76
37919719--37919748	15	2.0	15	93	0	51	56	33	10	0	1.32
37929918--37929975	22	2.6	22	75	2	71	34	1	51	12	1.49
37932697--37932747	19	2.6	19	70	17	50	31	1	3	62	1.24
37933693--37933735	21	2.0	21	86	8	61	0	39	2	58	1.11
37937865--37937914	19	2.6	18	84	9	55	46	4	14	36	1.63
37946462--37946510	21	2.3	21	78	0	53	26	0	4	69	1.06
37947898--37947962	31	2.1	31	97	0	121	56	9	20	13	1.64
37948759--37948819	32	1.9	32	93	0	104	14	34	0	50	1.43
37948868--37948909	17	2.5	17	84	7	50	54	0	2	42	1.13
37948860--37948916	21	2.8	21	77	15	57	56	1	1	40	1.20
37953286--37953320	6	5.8	6	100	0	70	17	0	68	14	1.21
37954743--37954781	10	3.7	10	83	12	51	64	0	0	35	0.94
37972385--37972409	2	12.5	2	100	0	50	0	48	0	52	1.00
37975847--37975970	2	64.5	2	80	16	147	47	1	0	49	1.17
37975848--37975970	39	3.3	37	80	17	155	47	1	0	48	1.17
37975841--37975958	61	1.9	61	91	6	195	46	1	1	49	1.22
37990345--37990369	2	12.5	2	100	0	50	52	0	0	48	1.00
38017347--38017372	2	13.0	2	100	0	52	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38018601--38018736	73	1.9	73	81	3	166	38	11	7	42	1.69
38034165--38034472	94	3.2	95	83	8	387	41	5	7	45	1.54
38039346--38039372	2	13.5	2	100	0	54	51	0	0	48	1.00
38042901--38042939	18	2.1	19	85	4	53	33	2	5	58	1.33
38043050--38043289	104	2.3	104	84	3	295	36	8	12	42	1.73
38043165--38043297	26	5.2	25	71	16	92	38	7	12	42	1.70
38044486--38044704	54	4.0	54	86	7	316	36	27	15	20	1.93
38044486--38044704	111	2.0	108	88	6	325	36	27	15	20	1.93
38046539--38046592	27	2.0	27	92	0	90	38	20	14	25	1.91
38046467--38046767	102	3.0	99	92	2	512	32	24	22	19	1.97
38046641--38046694	27	2.0	27	100	0	108	40	22	14	22	1.90
38046670--38046810	72	2.0	72	95	0	255	32	25	23	18	1.97
38052237--38052347	45	2.5	45	90	0	186	23	19	22	34	1.97
38052275--38052426	69	2.2	69	86	0	205	23	20	20	35	1.96
38052219--38052536	114	2.8	113	89	0	474	24	19	21	34	1.96
38052344--38052471	45	2.8	45	85	2	168	25	21	18	34	1.96
38052396--38052536	69	2.0	69	91	2	230	24	19	21	34	1.96
38052441--38052491	24	2.1	24	96	0	93	25	13	21	39	1.90
38079266--38079299	13	2.7	13	86	4	52	88	5	5	0	0.64
38088173--38088198	3	8.7	3	100	0	52	0	0	30	69	0.89
38092603--38092633	2	15.5	2	100	0	62	48	0	51	0	1.00
38098738--38098774	3	12.3	3	94	0	65	62	0	35	2	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38110161--38110193	14	2.3	15	89	5	50	0	21	0	78	0.75
38112264--38112379	37	3.2	36	77	15	121	52	5	3	38	1.41
38113959--38113987	4	7.5	4	92	7	51	24	0	0	75	0.80
38119206--38119258	26	2.0	27	85	10	74	11	16	9	62	1.54
38120880--38120905	2	13.0	2	100	0	52	50	0	50	0	1.00
38120895--38120993	50	2.0	49	98	2	189	18	18	46	17	1.84
38121396--38121422	2	13.5	2	100	0	54	0	48	0	51	1.00
38122845--38123019	93	1.9	93	89	0	269	30	14	17	37	1.90
38125027--38125060	2	17.0	2	100	0	68	50	0	0	50	1.00
38125988--38126015	7	4.0	7	100	0	56	28	14	28	28	1.95
38129600--38129648	20	2.3	22	82	10	57	14	8	2	75	1.12
38130425--38130467	21	2.0	21	90	0	68	34	20	6	37	1.80
38136015--38136071	15	3.7	15	77	15	53	54	0	0	45	0.99
38141746--38141774	15	1.9	15	100	0	58	20	3	62	13	1.46
38141733--38141789	18	3.2	18	72	5	53	17	8	59	14	1.59
38155612--38155711	45	2.1	48	81	5	125	61	3	1	35	1.18
38185681--38185707	2	13.5	2	100	0	54	48	0	0	51	1.00
38190975--38191034	2	31.5	2	77	15	65	46	0	1	50	1.11
38190975--38191033	13	4.5	13	76	18	59	47	0	1	49	1.11
38193517--38193547	7	4.4	7	100	0	62	16	12	45	25	1.83
38194647--38194673	2	13.5	2	100	0	54	48	0	0	51	1.00
38195088--38195139	22	2.4	22	75	12	54	57	5	7	28	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38203485--38203852	122	3.0	122	86	3	468	32	12	18	36	1.89
38223318--38223521	106	1.9	106	94	0	363	27	19	15	37	1.92
38237193--38237252	29	2.1	29	96	0	111	18	28	15	38	1.91
38241274--38241313	20	2.0	20	85	9	55	27	35	7	30	1.84
38242587--38242626	17	2.6	16	85	14	57	40	0	0	60	0.97
38246605--38246629	2	12.5	2	100	0	50	52	0	48	0	1.00
38258710--38258869	79	2.0	79	91	0	257	26	18	15	40	1.90
38300005--38300036	2	16.0	2	93	0	55	53	0	46	0	1.00
38304039--38304127	23	3.9	22	68	20	65	64	1	2	32	1.13
38304048--38304137	14	5.9	15	72	19	62	64	1	2	32	1.13
38304082--38304137	15	3.9	14	79	6	58	69	1	0	28	0.98
38304426--38304486	27	2.2	29	85	11	83	37	16	16	29	1.91
38309944--38309996	25	2.2	24	90	10	81	54	0	0	45	0.99
38310041--38310088	10	4.7	10	76	2	51	72	2	2	20	1.04
38310095--38310228	19	6.8	20	72	21	113	56	1	2	39	1.21
38310092--38310200	37	2.8	37	87	8	139	55	2	1	39	1.25
38310095--38310228	41	3.3	40	82	11	152	56	1	2	39	1.21
38310283--38310345	25	2.6	25	85	11	87	52	0	1	46	1.10
38310339--38310394	25	2.2	25	90	6	87	50	3	0	46	1.19
38310173--38310451	134	2.0	138	87	6	408	53	2	1	42	1.23
38310417--38310478	22	2.7	23	77	5	72	48	0	3	48	1.17
38310305--38310518	111	1.9	114	85	8	298	52	2	1	43	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38321059--38321083	2	12.5	2	100	0	50	52	0	48	0	1.00
38322041--38322075	2	17.5	2	93	0	61	45	2	51	0	1.16
38327885--38327931	6	7.8	6	90	0	76	31	63	4	0	1.13
38327885--38327935	18	2.8	18	90	0	84	31	62	5	0	1.19
38338283--38338319	15	2.5	15	95	0	65	51	0	8	40	1.32
38338524--38338573	21	2.3	23	75	25	56	34	2	2	62	1.18
38350788--38350819	16	1.9	17	93	6	57	62	15	6	15	1.51
38350997--38351040	20	2.1	22	83	8	56	38	9	4	47	1.56
38375016--38375040	5	5.0	5	100	0	50	40	0	60	0	0.97
38375547--38375575	14	2.0	15	93	6	51	31	27	41	0	1.56
38404490--38404520	12	2.6	12	94	0	53	29	38	0	32	1.57
38405117--38405144	2	14.0	2	100	0	56	0	50	0	50	1.00
38414840--38414892	26	2.0	26	85	0	70	20	13	11	54	1.69
38416955--38417123	27	6.3	26	75	10	101	28	21	27	21	1.99
38435282--38435358	33	2.3	33	88	0	109	9	35	7	48	1.64
38435291--38435358	27	2.5	27	85	0	91	10	35	7	47	1.66
38435288--38435343	6	8.8	6	79	11	58	10	35	5	48	1.61
38436828--38436871	14	3.1	14	83	0	52	45	6	4	43	1.51
38436828--38436857	2	15.0	2	92	0	51	50	3	0	46	1.18
38443097--38443130	12	2.8	12	90	0	50	61	5	2	29	1.34
38459598--38459630	17	2.0	17	88	5	50	33	0	6	60	1.21
38459704--38459741	5	7.6	5	90	0	58	39	18	23	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38467811--38467877	2	33.5	2	91	5	109	50	0	1	47	1.10
38476077--38476121	17	2.5	18	82	17	58	53	2	0	44	1.13
38476077--38476122	18	2.6	16	86	13	56	54	2	0	43	1.12
38476505--38476596	47	2.0	47	84	2	123	27	26	19	27	1.99
38482112--38482139	2	14.0	2	100	0	56	50	0	0	50	1.00
38482628--38482686	11	5.6	10	73	11	55	71	0	6	22	1.09
38482628--38482686	5	11.2	5	75	10	55	71	0	6	22	1.09
38482814--38482938	26	4.8	24	74	13	72	40	0	1	58	1.08
38482823--38482928	26	3.9	26	75	9	97	38	0	1	59	1.08
38482893--38482953	28	2.2	28	84	0	77	45	1	1	50	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97