genome.fa.s9.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  66  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26680296--26680341	24	1.9	24	95	0	83	56	13	4	26	1.55
26684094--26684142	20	2.5	20	96	0	89	40	0	0	59	0.98
26684172--26684214	21	2.0	22	82	13	54	48	0	6	44	1.29
26688030--26688171	42	3.4	42	86	0	203	21	22	32	23	1.98
26688191--26688252	26	2.4	26	97	0	115	22	3	41	32	1.70
26696723--26696762	20	2.1	19	85	4	53	7	10	5	77	1.11
26697769--26697798	16	1.9	16	93	6	53	13	3	16	66	1.37
26701107--26701349	73	3.3	74	81	4	235	41	16	19	23	1.90
26701747--26701848	33	3.0	34	66	5	80	28	12	25	33	1.93
26701736--26701871	68	2.0	67	89	1	209	25	13	25	35	1.92
26701736--26701837	33	3.0	33	66	5	87	24	12	25	37	1.91
26703133--26703241	42	2.6	42	86	4	130	22	35	18	22	1.95
26703147--26703241	42	2.3	42	90	0	145	23	33	18	24	1.97
26711515--26711667	72	2.1	73	85	3	202	37	18	22	21	1.94
26712052--26712187	67	2.0	67	86	0	191	25	12	25	36	1.91
26712732--26712890	29	5.5	29	83	8	189	37	10	12	38	1.78
26712729--26712902	59	3.0	57	83	5	213	39	10	12	36	1.79
26712732--26712902	88	1.9	88	84	6	231	39	10	12	37	1.78
26717912--26717965	28	2.0	27	85	3	72	29	22	20	27	1.98
26735972--26736026	28	2.0	28	92	0	92	21	1	14	61	1.42
26737814--26737844	15	2.1	15	93	0	53	41	29	0	29	1.56
26741071--26741134	31	2.1	31	84	0	83	23	1	7	67	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26745685--26745831	49	3.0	49	93	3	244	42	16	11	29	1.83
26747494--26747521	6	4.7	6	100	0	56	85	0	0	14	0.59
26752252--26752277	6	4.3	6	100	0	52	34	0	65	0	0.93
26764145--26764220	37	2.1	37	97	0	143	27	10	17	44	1.81
26770564--26770628	34	1.9	34	87	9	98	32	32	7	27	1.85
26770676--26770728	27	2.0	27	88	0	79	35	24	13	26	1.92
26771277--26771371	21	4.5	21	83	0	100	38	10	18	31	1.85
26772338--26772435	49	2.0	50	84	6	128	37	14	10	37	1.80
26773269--26773373	45	2.4	44	82	3	120	23	10	26	39	1.87
26773221--26773361	67	2.1	66	84	1	174	24	9	24	42	1.83
26773220--26773373	22	7.0	22	84	1	146	23	9	24	42	1.84
26773377--26773419	22	2.0	22	90	0	68	34	32	11	20	1.89
26773413--26773457	22	2.0	22	86	0	63	46	15	11	26	1.79
26774802--26774846	21	2.3	19	88	7	63	42	2	6	48	1.41
26775341--26775374	17	2.0	17	88	0	50	47	2	0	50	1.16
26786584--26786610	6	4.5	6	100	0	54	0	66	0	33	0.92
26788078--26788156	35	2.3	35	86	4	106	46	16	15	21	1.83
26788091--26788183	35	2.7	35	84	0	114	45	18	13	22	1.85
26788100--26788204	35	3.0	35	82	0	84	44	19	15	20	1.86
26788397--26788477	29	2.8	29	92	0	126	19	25	7	46	1.76
26788397--26788466	14	4.8	15	72	19	58	20	27	7	45	1.76
26792003--26792035	3	10.7	3	93	6	57	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26793456--26793528	35	2.1	35	86	0	101	43	9	17	28	1.81
26793754--26793816	29	2.2	29	82	5	74	19	28	7	44	1.78
26795921--26796008	2	45.0	2	93	4	153	50	48	1	0	1.08
26796935--26796963	12	2.4	12	100	0	58	31	17	6	44	1.75
26798142--26798184	21	2.0	22	81	4	52	55	6	16	20	1.64
26799668--26799692	2	12.5	2	100	0	50	0	48	0	52	1.00
26818865--26818908	15	3.1	15	81	18	58	27	2	0	70	0.99
26818989--26819027	15	2.6	16	84	12	55	20	0	5	74	1.01
26818981--26819016	17	2.1	17	89	5	54	25	0	0	75	0.81
26823662--26823789	34	3.8	34	87	1	143	30	14	22	32	1.93
26824027--26824057	16	2.0	16	93	6	55	38	6	3	51	1.44
26830114--26830144	2	15.0	2	93	6	53	48	3	0	48	1.17
26830185--26830307	42	2.9	42	89	4	151	23	34	21	20	1.96
26836034--26836071	19	2.0	19	94	0	67	28	0	28	42	1.56
26836235--26836295	28	2.1	29	82	8	72	29	4	22	42	1.75
26843234--26843268	2	17.0	2	88	5	52	51	2	0	45	1.16
26845817--26845893	35	2.3	34	88	8	113	31	14	24	29	1.94
26846021--26846122	52	2.0	52	86	3	143	28	8	10	51	1.66
26847832--26847890	30	2.0	28	81	12	66	38	1	0	59	1.08
26847859--26847896	20	1.9	20	84	10	51	47	0	0	52	1.00
26851819--26851901	29	2.9	28	78	3	76	48	4	26	20	1.69
26852161--26852257	35	2.8	35	90	3	151	20	19	17	42	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26852161--26852292	70	1.9	70	84	3	176	20	17	18	43	1.89
26852752--26852804	4	13.2	4	95	0	88	50	20	0	28	1.48
26852782--26852866	4	21.2	4	90	0	98	48	4	3	43	1.41
26857070--26857113	10	4.5	10	80	13	56	72	0	2	25	0.96
26857070--26857106	18	2.0	19	89	5	58	72	0	2	24	0.97
26866818--26866847	15	1.9	16	93	6	53	6	13	3	76	1.11
26878079--26878112	10	3.3	10	84	8	50	26	0	2	70	1.01
26878075--26878122	21	2.3	21	89	10	73	27	2	4	66	1.21
26882248--26882417	39	4.4	39	84	5	195	27	12	34	25	1.93
26882265--26882417	78	2.0	78	87	3	222	27	12	33	26	1.92
26891591--26891719	39	3.4	39	84	5	131	23	13	37	26	1.91
26891616--26891727	39	2.9	39	85	3	140	22	11	36	29	1.89
26895505--26895761	137	1.9	133	92	3	433	37	15	11	35	1.84
26896065--26896122	30	1.9	30	82	6	73	41	10	15	32	1.81
26896608--26896714	26	4.1	25	78	14	117	28	1	0	69	1.05
26896625--26896685	24	2.8	20	70	27	52	29	3	0	67	1.07
26896580--26896709	48	2.8	45	77	21	119	27	2	0	69	1.06
26897507--26897546	12	3.0	14	85	14	66	50	15	0	35	1.44
26898795--26898831	18	2.1	18	90	10	58	51	0	0	48	1.00
26903441--26903655	77	2.7	77	87	2	295	30	21	14	33	1.93
26926783--26926913	52	2.5	52	88	1	201	33	12	47	6	1.67
26927457--26927486	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26940246--26940292	12	3.8	12	83	11	60	70	0	0	29	0.88
26940246--26940283	11	3.4	11	88	3	58	71	0	0	28	0.87
26946545--26946577	15	2.2	15	94	0	57	36	18	12	33	1.88
26947532--26947569	20	1.9	20	84	10	51	26	0	2	71	1.00
26948734--26948773	20	2.0	20	95	0	71	30	12	17	40	1.86
26948913--26948962	21	2.4	20	80	9	64	48	10	8	34	1.66
26948917--26948968	21	2.4	21	77	3	59	50	9	5	34	1.59
26949050--26949112	21	3.0	21	81	4	81	53	14	4	26	1.60
26949053--26949112	22	2.8	21	80	5	75	53	15	3	28	1.57
26949228--26949292	21	3.1	21	81	0	76	46	18	9	26	1.79
26953342--26953383	20	2.1	20	86	0	57	42	9	30	16	1.80
26955266--26955543	140	2.0	137	95	4	497	32	8	26	32	1.87
26965746--26965785	20	2.0	20	100	0	80	35	20	5	40	1.74
26971936--26972097	43	3.8	43	82	6	193	25	19	33	20	1.96
26981955--26981992	19	2.0	19	100	0	76	21	21	5	52	1.66
26984178--26984203	2	13.0	2	100	0	52	50	0	0	50	1.00
26988143--26988188	16	2.9	16	80	0	56	17	0	15	67	1.24
27001508--27001596	46	1.9	46	97	0	169	44	14	6	33	1.72
27019671--27019722	22	2.6	20	79	11	54	51	0	1	46	1.12
27019752--27019815	20	3.1	20	75	16	67	57	0	1	40	1.08
27019960--27020003	15	2.9	15	83	12	54	56	0	2	40	1.11
27019948--27020049	42	2.4	42	83	6	127	55	2	1	39	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27031021--27031068	20	2.5	20	86	3	62	68	4	2	25	1.18
27031047--27031098	14	3.8	13	75	14	52	65	7	1	25	1.30
27031653--27031688	8	4.5	8	89	0	54	25	0	2	72	0.98
27031653--27031690	16	2.4	16	90	0	67	26	0	2	71	1.00
27033663--27033817	34	4.3	34	70	12	103	38	23	18	20	1.93
27040580--27040615	15	2.4	15	90	0	54	30	2	11	55	1.49
27047358--27047426	22	3.1	22	91	0	111	27	2	28	40	1.71
27047413--27048064	211	3.1	209	81	4	705	23	12	24	40	1.88
27047845--27047887	22	2.0	22	85	0	59	11	11	25	51	1.72
27052468--27052507	17	2.3	18	86	4	55	30	5	2	62	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97