genome.fa.s9.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  25  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10682625--10685031	813	3.0	801	93	1	4097	38	18	9	33	1.84
10690187--10690276	2	45.0	2	82	12	96	45	0	2	46	1.15
10690822--10690856	15	2.3	15	85	0	52	42	5	2	48	1.41
10691050--10691126	35	2.2	34	84	6	93	23	2	14	59	1.47
10708763--10708798	17	2.1	17	94	0	63	55	0	8	36	1.30
10718319--10718371	22	2.5	20	83	16	72	77	0	0	22	0.77
10718666--10718706	18	2.2	19	86	4	57	78	0	4	17	0.93
10718887--10718947	8	7.9	8	87	5	81	70	0	0	29	0.88
10718884--10718949	16	4.2	16	86	5	100	72	0	0	27	0.85
10719024--10719135	28	3.9	28	73	16	79	70	0	7	22	1.11
10719094--10719127	14	2.4	14	95	0	59	76	0	0	23	0.79
10719048--10719137	37	2.6	33	80	8	90	72	0	5	22	1.05
10731051--10731405	38	9.3	38	80	6	378	23	14	19	43	1.87
10731051--10731405	75	4.6	75	85	5	433	23	14	19	43	1.87
10731334--10731497	83	2.0	83	87	0	238	32	12	15	39	1.85
10732937--10732975	15	2.7	15	84	4	53	79	2	0	17	0.84
10732937--10732975	7	5.4	7	84	6	51	79	2	0	17	0.84
10733169--10733231	13	4.9	13	79	11	67	73	1	4	20	1.11
10733170--10733226	21	2.9	21	76	19	61	73	1	5	19	1.11
10733284--10733326	19	2.2	19	83	8	50	76	0	4	18	0.95
10733606--10733725	28	4.1	27	75	17	91	70	0	6	23	1.11
10733626--10733709	14	6.2	14	74	20	81	73	0	3	22	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10733662--10733708	3	17.3	3	79	16	50	76	0	0	23	0.78
10733628--10733705	11	7.2	11	75	25	53	73	0	3	23	1.00
10733646--10733716	20	3.6	19	76	21	58	74	0	4	21	0.98
10735610--10735660	2	27.5	2	84	15	74	45	0	0	54	0.99
10735610--10735661	17	3.1	17	89	10	72	44	0	0	55	0.99
10752368--10752433	26	2.5	26	92	4	107	22	30	18	28	1.97
10755900--10755929	14	2.1	15	93	6	53	13	13	0	73	1.10
10755929--10756030	28	3.7	27	80	7	98	22	12	20	44	1.85
10756119--10756209	26	3.6	24	77	14	94	31	13	13	41	1.82
10757377--10757435	31	1.9	31	89	0	91	28	15	8	47	1.74
10758232--10758319	17	4.9	17	71	9	52	17	5	3	73	1.16
10760997--10761153	28	5.7	28	78	2	149	34	7	17	40	1.78
10760997--10761208	55	3.9	55	77	5	182	34	8	16	40	1.79
10761010--10761208	82	2.4	83	79	5	201	33	9	16	41	1.79
10761370--10761432	29	2.2	28	82	5	72	28	14	15	41	1.87
10763679--10763821	72	2.0	72	88	2	216	21	22	16	39	1.92
10764154--10764266	57	2.0	57	92	3	192	49	23	11	15	1.77
10766610--10766636	2	13.5	2	100	0	54	48	51	0	0	1.00
10785956--10785985	2	15.0	2	100	0	60	50	0	0	50	1.00
10786278--10786314	16	2.4	15	95	4	65	83	2	13	0	0.74
10786282--10786318	19	2.0	18	89	5	56	83	2	13	0	0.74
10794047--10794085	10	3.9	10	93	0	69	43	0	20	35	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10798778--10798828	17	2.9	17	80	8	50	45	5	1	47	1.38
10799151--10799191	18	2.2	19	86	4	57	51	0	2	46	1.14
10799266--10799299	16	2.2	16	90	10	54	47	5	0	47	1.26
10799970--10800246	89	3.1	89	85	1	374	21	36	15	26	1.93
10809518--10810071	277	2.0	276	98	1	1083	35	26	12	25	1.92
10814929--10815000	36	2.0	37	91	8	121	33	19	5	41	1.75
10815504--10815541	20	1.9	20	88	0	58	28	10	15	44	1.80
10815492--10815616	60	2.1	61	89	1	189	35	12	16	36	1.86
10823227--10823312	41	2.1	41	97	0	163	20	16	18	44	1.87
10824771--10824846	40	1.9	40	91	0	125	27	10	21	40	1.86
10827800--10827913	60	1.9	61	85	8	162	34	6	17	42	1.74
10828050--10828313	26	10.7	26	79	11	261	23	13	26	36	1.92
10828028--10828331	73	4.2	73	79	11	261	24	13	26	35	1.93
10828050--10828310	95	2.7	97	86	7	386	24	13	26	36	1.93
10828365--10828420	21	2.7	21	80	8	60	48	23	8	19	1.77
10831287--10831312	12	2.2	12	100	0	52	57	0	0	42	0.98
10836470--10836528	15	3.9	15	75	18	59	74	1	13	10	1.14
10836666--10837060	52	7.7	50	77	8	357	42	20	9	27	1.83
10836674--10837052	102	3.7	103	86	2	496	42	20	9	27	1.82
10836666--10837060	51	7.7	51	79	4	404	42	20	9	27	1.83
10844374--10844416	5	9.2	5	85	10	56	79	0	2	18	0.85
10844374--10844416	19	2.3	18	88	11	61	79	0	2	18	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10844374--10844416	14	3.1	15	87	9	56	79	0	2	18	0.85
10859286--10859333	24	2.0	25	91	4	80	41	0	12	45	1.42
10861673--10861712	2	20.0	2	94	0	71	50	2	0	47	1.14
10863673--10863729	23	2.4	23	88	8	80	64	10	5	19	1.43
10864849--10865045	92	2.2	91	95	2	360	34	15	16	32	1.90
10872217--10872257	18	2.3	18	91	0	64	24	17	21	36	1.94
10873971--10874063	42	2.2	43	94	1	161	25	16	33	24	1.96
10878224--10878253	11	2.7	11	89	0	51	56	0	3	40	1.16
10880096--10880239	36	4.1	35	76	15	136	25	13	31	29	1.93
10880106--10880237	69	1.9	69	83	6	169	23	14	32	29	1.94
10880072--10880240	36	4.7	36	76	10	125	23	13	33	28	1.93
10883093--10883261	31	5.5	31	81	2	189	30	18	14	36	1.91
10883093--10883266	62	2.8	62	82	5	217	31	18	14	35	1.91
10891004--10891042	18	2.2	17	86	4	51	64	2	28	5	1.28
10897443--10897485	18	2.4	18	84	0	59	46	4	32	16	1.67
10900224--10900296	29	2.4	29	86	4	92	27	19	15	38	1.91
10900224--10900325	31	3.4	31	87	2	127	29	22	13	34	1.93
10900751--10900796	23	2.0	23	87	8	67	23	10	13	52	1.71
10900751--10900997	73	3.4	72	82	2	269	23	16	12	47	1.80
10900751--10901017	146	1.8	146	80	3	322	23	17	11	46	1.82
10902175--10902265	42	2.1	43	86	6	123	40	16	7	35	1.77
10903492--10903524	16	2.1	16	88	11	50	27	9	18	45	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10906326--10906362	2	18.5	2	100	0	74	0	48	0	51	1.00
10912939--10912973	15	2.3	15	85	0	52	42	5	2	48	1.41
10916076--10916117	22	1.9	22	90	0	66	35	4	7	52	1.50
10919917--10919986	25	2.8	25	84	2	88	38	7	11	42	1.68
10920556--10920599	20	2.2	20	87	0	61	34	9	15	40	1.79
10921293--10921327	2	17.5	2	100	0	70	51	0	0	48	1.00
10921377--10921422	2	23.5	2	93	4	76	47	0	2	50	1.13
10926574--10926859	116	2.5	115	86	2	385	43	6	4	45	1.49
10927777--10927894	60	2.0	60	86	6	168	37	15	9	38	1.79
10927758--10927901	60	2.4	58	78	11	166	36	15	11	36	1.83
10932532--10932603	36	2.0	36	91	0	117	40	5	15	38	1.70
10932679--10932721	19	2.2	20	91	4	70	30	0	18	51	1.47
10937134--10937256	59	2.1	59	95	0	219	31	14	8	44	1.76
10938001--10938027	13	2.1	13	100	0	54	85	0	0	14	0.61
10940207--10940251	17	2.5	18	86	13	58	26	2	2	68	1.12
10943420--10943452	17	1.9	17	100	0	66	42	0	6	51	1.26
10956443--10956781	167	2.0	166	82	6	407	41	7	10	40	1.68
10963017--10963204	59	3.2	60	73	22	223	43	3	3	49	1.36
10962998--10963238	118	2.1	117	99	0	473	44	4	2	48	1.35
10963005--10963269	118	2.3	118	91	3	365	44	4	2	47	1.37
10966270--10966328	2	29.5	2	93	6	102	50	0	1	47	1.11
10970326--10970379	19	2.8	19	100	0	108	25	0	29	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10972907--10972945	15	2.6	16	88	8	55	28	2	17	51	1.59
10980666--10980809	58	2.5	58	84	4	166	37	14	24	23	1.92
10980666--10980809	29	5.0	29	80	5	148	37	14	24	23	1.92
10987524--10987561	20	1.9	20	89	10	60	36	13	10	39	1.79
10989945--10989975	16	1.9	16	93	0	53	19	48	6	25	1.72
10991512--10991546	12	2.9	12	91	0	52	54	0	0	45	0.99
10996706--10996828	63	2.0	63	83	3	158	43	17	14	23	1.86
10997178--10997264	34	2.5	34	78	12	86	34	18	11	35	1.87
10997200--10997290	34	2.6	34	86	5	112	31	18	13	36	1.89
10997332--10997429	41	2.4	41	98	0	187	30	25	15	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97