genome.fa.s9.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Length:  38630433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   

This is table  49  of  97  ( 11551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19803206--19803238	17	1.9	17	93	0	57	42	12	21	24	1.86
19803457--19803522	33	2.0	33	84	0	87	13	43	6	36	1.69
19803905--19803958	23	2.3	23	90	6	83	51	1	0	46	1.11
19803812--19804072	135	1.9	137	85	3	357	57	3	6	32	1.42
19806800--19806847	21	2.3	21	88	0	78	22	12	16	47	1.80
19809247--19809331	30	2.8	30	100	0	170	20	24	2	52	1.58
19809438--19809480	14	3.1	14	79	0	50	53	6	0	39	1.28
19809487--19809533	22	2.1	23	84	11	62	48	10	6	34	1.63
19811613--19811680	21	3.2	21	87	0	100	23	17	23	35	1.95
19813605--19813719	37	3.1	37	86	5	178	30	11	35	22	1.89
19824200--19824315	43	2.7	43	86	5	155	24	18	39	18	1.92
19824301--19824363	20	3.2	20	86	2	92	26	3	39	30	1.72
19827230--19827307	37	2.1	37	100	0	156	26	10	38	24	1.87
19830660--19830734	35	2.1	35	92	0	123	22	8	30	38	1.83
19830742--19830822	33	2.5	33	82	13	105	22	12	32	33	1.91
19833415--19833459	22	2.0	22	83	8	56	51	8	8	31	1.64
19836305--19836355	14	3.7	14	72	15	52	17	19	23	39	1.92
19843630--19843670	21	1.9	22	90	5	66	17	24	7	51	1.70
19848212--19848274	22	2.9	22	90	9	94	41	22	4	31	1.74
19853547--19853594	21	2.3	20	79	10	60	14	22	6	56	1.61
19853552--19853592	21	1.9	22	90	5	66	17	24	7	51	1.70
19855471--19855609	37	3.8	37	85	4	192	33	9	34	23	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19855873--19855946	21	3.5	21	87	3	105	35	25	25	13	1.93
19870215--19870247	15	2.1	16	88	5	50	18	3	15	63	1.43
19871383--19871542	68	2.4	68	81	2	178	37	11	16	33	1.86
19874374--19874412	13	2.9	13	88	11	53	0	23	0	76	0.78
19875297--19875431	39	3.5	39	88	0	189	27	13	34	25	1.93
19877553--19877577	10	2.5	10	100	0	50	36	0	12	52	1.39
19877878--19877939	21	3.0	21	73	0	61	40	19	20	19	1.92
19882703--19882734	2	16.0	2	100	0	64	50	0	0	50	1.00
19887084--19887143	20	3.0	20	72	2	57	35	20	11	33	1.88
19888777--19888836	30	2.1	29	81	6	68	30	8	21	40	1.83
19892783--19892809	14	1.9	14	100	0	54	22	0	44	33	1.53
19897205--19897248	22	2.1	20	83	8	52	31	13	29	25	1.94
19899397--19899573	63	2.8	63	89	3	293	27	11	35	24	1.91
19915154--19915194	20	2.0	20	85	0	55	14	2	4	78	1.03
19917239--19917311	27	2.7	28	93	4	123	8	26	19	46	1.77
19917618--19917708	34	2.7	34	79	3	85	32	25	12	29	1.92
19917768--19917855	35	2.8	30	80	13	81	0	25	7	67	1.18
19917841--19917879	17	2.2	18	86	9	53	0	17	2	79	0.84
19917940--19917974	2	17.5	2	100	0	70	48	0	0	51	1.00
19930600--19930724	43	2.9	43	89	2	189	20	35	18	25	1.95
19931531--19931570	20	2.0	20	90	0	62	37	7	37	17	1.78
19935199--19935228	14	2.1	15	93	6	53	46	13	13	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19935892--19936010	57	2.1	57	87	3	168	34	6	18	40	1.77
19945652--19945684	7	4.6	7	96	3	57	72	3	24	0	0.98
19945712--19945753	16	2.6	16	96	3	75	71	0	23	4	1.05
19945712--19945768	14	4.0	14	81	9	53	73	0	21	5	1.02
19945727--19945773	22	2.1	22	92	0	76	76	0	19	4	0.95
19947090--19947154	28	2.3	29	84	10	82	43	7	9	40	1.65
19947318--19947350	17	1.9	17	88	11	50	39	3	15	42	1.62
19953512--19953610	49	2.0	49	96	0	180	37	27	14	21	1.92
19953750--19953833	25	3.2	25	76	8	80	25	30	17	26	1.97
19956402--19956578	35	5.2	35	74	14	140	35	27	13	24	1.93
19956406--19956581	67	2.6	67	90	3	275	35	26	13	24	1.93
19960248--19960325	21	3.7	21	83	6	88	24	19	16	39	1.91
19965285--19965322	19	2.0	19	94	0	67	42	28	0	28	1.56
19972362--19972399	19	2.0	19	89	0	58	44	26	0	28	1.54
19986211--19986251	2	21.0	2	95	5	75	48	0	0	51	1.00
19991073--19991107	2	17.5	2	100	0	70	0	48	0	51	1.00
19991544--19991575	4	8.0	4	92	0	55	53	21	0	25	1.46
19998163--19998205	17	2.6	16	78	10	50	25	0	11	62	1.29
20000211--20001263	527	2.0	526	97	0	1980	31	15	24	29	1.96
20003735--20003777	17	2.6	16	78	10	50	25	0	11	62	1.29
20004712--20004739	11	2.5	11	100	0	56	39	25	17	17	1.92
20006921--20007095	35	5.2	35	75	14	161	34	26	13	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20006923--20007098	67	2.6	67	91	1	282	34	27	13	24	1.93
20007486--20007667	73	2.5	73	81	7	192	22	21	17	37	1.94
20011797--20011848	28	1.9	27	84	7	70	28	19	19	32	1.96
20019238--20019275	5	7.6	5	90	0	58	39	21	0	39	1.53
20019323--20019369	15	3.1	15	84	0	58	51	17	2	29	1.57
20020763--20020787	13	1.9	13	100	0	50	48	8	0	44	1.32
20025932--20025984	28	1.9	27	84	3	70	26	16	20	35	1.94
20026037--20026074	20	1.9	20	100	0	76	44	21	5	28	1.73
20026932--20027073	29	4.9	28	83	6	167	39	11	13	35	1.80
20026932--20027096	59	2.8	58	83	6	199	38	10	12	38	1.78
20027248--20027280	17	1.9	17	88	11	50	39	3	15	42	1.62
20028542--20028584	17	2.3	19	84	11	54	41	0	0	58	0.98
20032048--20032096	23	2.1	23	84	0	62	28	36	6	28	1.81
20032105--20032214	43	2.6	43	86	2	141	21	35	18	24	1.95
20033151--20033188	19	2.0	19	89	0	58	23	0	31	44	1.54
20041175--20041212	19	2.0	19	100	0	76	26	0	31	42	1.56
20041256--20041314	28	2.1	28	81	12	68	33	22	22	22	1.97
20048057--20048198	29	4.9	28	81	10	160	39	9	13	38	1.76
20048057--20048231	59	3.0	58	80	8	201	39	9	12	38	1.75
20048057--20048208	28	5.3	28	80	13	148	40	8	12	38	1.74
20051053--20051089	19	1.9	19	94	0	65	29	0	27	43	1.55
20055574--20055661	35	2.5	35	84	0	95	28	23	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20058661--20058693	17	1.9	17	88	11	50	42	15	3	39	1.62
20058890--20058992	29	3.7	29	82	10	124	39	9	8	41	1.69
20058844--20058999	54	2.8	56	77	12	140	41	9	9	39	1.71
20058834--20058999	28	5.9	28	77	10	151	39	10	9	40	1.72
20070257--20070543	145	2.0	144	93	0	484	41	16	11	30	1.83
20099835--20099887	28	1.9	27	88	3	79	28	22	18	30	1.98
20099932--20099977	20	2.3	20	92	0	74	45	19	4	30	1.70
20103987--20104093	21	4.8	21	70	17	72	42	2	3	50	1.34
20105165--20105290	47	2.6	48	89	1	191	37	6	11	45	1.65
20112800--20112847	18	2.6	19	90	3	71	56	0	0	43	0.99
20112830--20112859	11	2.7	11	89	0	51	56	0	0	43	0.99
20113978--20114099	61	2.0	61	88	3	183	26	27	25	20	1.99
20115348--20115450	43	2.4	43	86	1	136	20	36	17	25	1.94
20115989--20116048	30	2.1	29	81	6	68	31	8	21	38	1.83
20120556--20120757	60	3.4	60	88	1	289	32	20	21	26	1.97
20120622--20120661	21	1.9	21	84	0	53	22	22	25	30	1.99
20121143--20121261	43	2.8	43	84	2	132	21	36	18	23	1.95
20122982--20123155	29	5.9	28	80	9	177	39	10	12	38	1.77
20122982--20123155	59	3.0	58	84	4	224	39	10	12	38	1.77
20127828--20127858	2	15.5	2	93	0	53	45	0	0	54	0.99
20129916--20129971	25	2.2	25	93	0	94	37	7	23	32	1.82
20130469--20130815	61	5.7	61	92	0	577	23	17	32	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20138280--20138403	42	3.0	42	86	2	160	23	22	31	22	1.98
20142561--20142700	28	4.8	29	75	13	135	39	10	11	39	1.75
20142561--20142700	59	2.4	59	86	3	192	39	10	11	39	1.75
20142842--20142874	17	1.9	17	88	11	50	39	3	15	42	1.62
20151781--20151844	31	2.0	32	81	9	76	45	7	6	40	1.58
20157832--20157878	20	2.3	21	81	3	60	51	0	8	40	1.33
20160478--20160588	43	2.6	43	80	8	120	23	16	36	23	1.94
20162876--20163285	145	2.8	145	80	4	459	28	24	18	28	1.98
20162876--20163262	73	5.3	73	74	5	320	28	25	18	28	1.98
20174040--20175139	252	4.4	251	89	2	1650	47	7	12	33	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97