Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 ID=Chr04-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62178258

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   

This is table  106  of  198  ( 23681 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33953662--33953905
98
2.5
98
83
2
301
31
11
28
28
1.92
33962789--33962842
23
2.5
20
74
14
54
66
3
7
22
1.33
33969614--33969661
22
2.1
23
84
3
62
14
0
10
75
1.06
33970764--33970802
19
2.1
19
85
9
53
38
0
7
53
1.30
33991029--33991218
45
4.2
44
79
4
173
40
12
18
27
1.87
33998846--33998871
13
2.0
13
100
0
52
38
23
0
38
1.55
34004374--34004432
31
2.0
29
83
12
75
40
0
38
20
1.53
34005375--34005501
59
2.1
60
94
1
220
26
11
26
34
1.91
34006263--34006344
18
4.6
17
70
11
67
24
2
3
69
1.17
34006313--34006351
18
2.2
18
86
9
53
28
2
0
69
1.02
34006461--34006514
10
5.2
11
81
18
55
31
0
0
68
0.90
34006455--34006514
22
2.7
22
85
10
79
30
0
0
70
0.88
34006467--34006502
18
1.9
19
88
5
56
33
0
0
66
0.92
34012192--34012628
44
10.0
44
67
10
209
30
20
21
27
1.98
34012208--34012639
175
2.5
175
91
1
697
31
19
21
28
1.98
34014199--34014250
3
16.3
3
82
7
50
26
1
1
69
1.10
34014459--34014496
12
2.9
13
84
11
51
26
2
0
71
1.00
34014517--34014545
2
14.5
2
100
0
58
48
0
0
51
1.00
34017435--34017464
12
2.5
12
88
0
51
6
23
40
30
1.80
34018673--34018783
25
4.5
25
80
9
104
28
22
23
25
1.99
34020703--34020742
21
1.9
21
100
0
80
30
22
17
30
1.97
34030552--34030593
14
3.1
14
93
3
68
73
0
16
9
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34031367--34031410
14
3.1
15
80
9
56
70
2
15
11
1.26
34033217--34033282
31
2.1
31
82
0
78
25
22
22
28
1.99
34042071--34042127
19
3.0
20
82
10
66
56
0
3
40
1.17
34042347--34042378
2
16.0
2
100
0
64
50
0
0
50
1.00
34042852--34042886
16
2.2
16
89
0
52
25
8
8
57
1.57
34067754--34067975
93
2.3
96
84
3
279
41
2
16
38
1.63
34068014--34068304
126
2.3
126
92
1
485
32
19
21
26
1.97
34072000--34072037
18
2.1
18
90
0
58
42
10
26
21
1.85
34072110--34072171
30
2.1
30
84
0
79
9
12
45
32
1.75
34072685--34072724
7
5.7
7
100
0
80
57
15
0
27
1.38
34073832--34073892
29
2.2
29
85
5
81
54
3
3
39
1.33
34073894--34073925
11
2.9
11
100
0
64
37
0
34
28
1.57
34073894--34073949
22
2.6
22
78
16
64
41
0
32
26
1.56
34079161--34079287
52
2.4
51
81
11
150
40
7
1
51
1.39
34079215--34079316
28
3.8
28
76
15
117
45
7
0
46
1.39
34079295--34079476
95
1.9
94
84
7
246
35
9
4
51
1.54
34090540--34090581
13
3.3
12
87
9
57
42
7
14
35
1.73
34096849--34096895
25
2.0
23
87
8
67
36
4
4
55
1.39
34098529--34098572
2
22.5
2
95
4
81
52
0
0
47
1.00
34101882--34102121
101
2.4
101
92
0
417
27
24
16
31
1.96
34101882--34102119
33
7.1
33
67
7
129
28
24
16
31
1.96
34102959--34102997
20
2.0
20
85
5
53
30
7
2
58
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34112607--34112631
2
12.5
2
100
0
50
48
0
0
52
1.00
34117599--34117677
38
2.1
38
90
6
126
77
8
6
7
1.13
34119916--34120193
87
3.2
87
89
2
398
28
23
24
23
2.00
34119928--34120148
45
5.1
43
66
16
116
27
25
23
23
2.00
34120003--34120140
45
3.1
45
68
8
122
30
24
23
21
1.99
34120530--34120691
44
3.7
44
73
7
125
29
17
24
27
1.98
34122375--34122405
2
15.5
2
100
0
62
48
0
0
51
1.00
34126297--34126641
106
3.2
111
89
4
515
34
17
13
33
1.90
34127161--34127217
19
2.9
19
71
2
51
33
7
1
57
1.36
34127142--34127201
27
2.2
28
80
11
70
28
5
0
66
1.12
34128065--34128119
28
2.0
28
82
7
67
54
1
7
36
1.39
34134778--34134954
46
3.8
46
87
0
264
36
9
24
29
1.87
34139684--34139763
25
3.2
25
80
7
83
30
11
23
35
1.90
34141987--34142213
94
2.4
92
88
5
330
37
21
11
30
1.88
34142358--34142429
29
2.6
29
85
10
89
70
2
0
26
1.00
34142741--34142825
40
2.2
39
79
14
95
29
4
1
64
1.21
34142763--34142866
10
10.6
10
74
13
74
30
5
0
62
1.25
34142763--34142868
19
5.4
20
71
15
87
32
5
0
61
1.26
34142741--34142835
30
3.2
29
78
12
88
31
4
1
63
1.21
34142851--34142908
28
2.1
27
87
3
80
36
3
1
58
1.25
34142845--34142923
28
2.8
27
79
9
77
35
3
2
58
1.30
34143069--34143255
84
2.2
83
84
2
248
33
11
20
34
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34143069--34143276
84
2.4
84
84
4
231
31
11
20
36
1.89
34146842--34146879
18
2.1
18
95
0
67
42
21
13
23
1.88
34151699--34151731
14
2.3
15
89
5
50
27
15
33
24
1.95
34153054--34153589
89
6.0
89
89
0
768
29
26
21
22
1.99
34153719--34153832
44
2.6
44
82
10
144
29
19
24
26
1.98
34154610--34154656
25
1.9
24
83
12
60
36
4
8
51
1.52
34167652--34167698
23
2.0
23
100
0
94
12
23
17
46
1.82
34169432--34169464
14
2.3
15
85
15
52
54
9
0
36
1.32
34175578--34175683
22
5.3
21
63
28
61
45
23
3
27
1.70
34175600--34175661
17
3.4
17
69
26
54
46
24
1
27
1.62
34175514--34175690
39
4.5
39
92
0
282
46
21
3
28
1.69
34186449--34186515
26
2.6
27
92
4
111
43
10
0
46
1.38
34186584--34186677
27
3.5
27
88
2
118
26
27
28
17
1.97
34186575--34186677
54
1.9
54
84
4
136
26
27
30
16
1.97
34186826--34186851
10
2.6
10
100
0
52
26
0
7
65
1.20
34187130--34187182
26
2.0
26
96
0
97
43
0
7
49
1.31
34187188--34187218
12
2.6
12
94
0
53
19
0
19
61
1.35
34187774--34187818
18
2.5
18
77
0
54
31
8
46
13
1.74
34193630--34193703
4
18.5
4
74
10
62
1
33
0
64
1.02
34193994--34194055
3
20.7
3
100
0
124
67
0
0
32
0.91
34194468--34194534
31
2.2
30
86
2
89
41
2
10
44
1.54
34196047--34196119
29
2.5
29
84
8
96
24
10
17
46
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34196277--34196427
59
2.5
60
83
10
177
45
9
9
35
1.70
34210052--34210085
17
2.0
17
100
0
68
52
0
5
41
1.25
34210445--34210494
15
3.3
15
83
11
57
60
2
2
36
1.20
34210463--34210503
16
2.6
16
80
11
57
60
0
0
39
0.96
34211384--34211449
11
6.3
11
76
18
61
39
3
0
57
1.14
34211376--34211440
29
2.3
27
82
10
76
41
1
0
56
1.08
34211364--34211463
40
2.5
40
88
3
157
37
2
0
61
1.08
34211432--34211471
21
1.9
21
89
0
62
37
2
0
60
1.11
34211431--34211485
21
2.5
20
80
13
56
38
1
3
56
1.28
34211908--34211971
33
2.0
30
82
8
74
46
3
6
43
1.44
34213551--34213594
15
3.0
15
76
6
54
54
2
0
43
1.12
34214043--34214143
27
3.7
27
82
1
130
32
23
7
35
1.84
34215675--34215715
18
2.3
18
86
0
55
60
4
29
4
1.38
34217271--34217421
39
3.8
40
89
3
209
35
25
23
15
1.94
34217269--34217446
79
2.2
79
81
7
209
38
24
20
16
1.93
34217484--34217676
41
4.7
41
86
3
237
23
24
23
29
1.99
34218584--34218626
7
6.1
7
86
0
59
20
0
48
30
1.50
34218587--34218636
21
2.3
22
82
3
66
20
2
44
34
1.63
34218958--34218995
13
2.8
14
88
8
60
57
0
5
36
1.21
34222508--34222820
43
7.3
43
84
2
326
20
18
30
30
1.97
34227283--34227347
32
2.0
32
82
11
80
27
23
23
26
2.00
34228328--34228367
20
2.0
20
85
0
53
47
0
15
37
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34228869--34228966
24
4.0
24
74
7
81
19
22
18
39
1.92
34228875--34228937
24
2.6
24
87
2
90
15
26
20
36
1.93
34229028--34229100
27
2.8
25
80
8
83
19
28
21
30
1.98
34229112--34229181
25
2.8
25
80
2
77
22
22
21
32
1.98
34238338--34238372
18
2.0
17
88
5
52
45
0
0
54
0.99
34238529--34238626
44
2.2
45
85
5
128
36
29
5
28
1.79
34241854--34241884
16
2.0
15
93
6
53
70
6
3
19
1.22
34241892--34241930
2
19.5
2
100
0
78
48
0
0
51
1.00
34241995--34242074
34
2.3
35
85
6
101
41
0
2
56
1.13
34248096--34248285
101
1.9
99
82
6
240
26
23
15
33
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198