Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 ID=Chr04-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62178258

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   

This is table  8  of  198  ( 23681 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2791032--2791069
2
19.0
2
100
0
76
50
0
0
50
1.00
2791962--2792000
14
2.8
14
84
0
51
35
12
23
28
1.91
2797933--2798015
11
7.9
11
71
18
70
40
2
0
56
1.12
2797923--2798015
31
3.0
32
90
7
147
39
2
0
58
1.10
2798574--2798637
29
2.2
30
88
2
94
29
12
10
46
1.76
2807080--2807110
12
2.6
12
94
0
53
32
0
0
67
0.91
2807386--2807444
24
2.4
24
86
8
75
57
5
1
35
1.31
2807635--2807665
5
6.2
5
100
0
62
19
0
0
80
0.71
2807855--2807908
21
2.5
21
75
3
54
22
12
1
62
1.39
2809060--2809093
4
8.5
4
100
0
68
23
0
26
50
1.50
2814262--2814305
22
2.0
22
90
4
70
45
0
0
54
0.99
2814281--2814336
20
2.9
19
82
12
62
37
3
3
55
1.35
2821738--2821818
28
2.8
28
78
10
85
38
3
0
58
1.16
2826476--2826532
29
2.0
29
86
6
80
22
19
29
28
1.98
2828855--2828935
25
3.1
25
81
13
83
58
0
4
37
1.20
2830223--2830320
36
2.7
35
73
9
90
31
20
19
28
1.97
2831202--2831226
2
12.5
2
100
0
50
52
0
0
48
1.00
2836242--2836267
11
2.4
11
100
0
52
92
0
7
0
0.39
2840474--2840516
22
1.9
23
85
4
61
23
9
11
55
1.64
2840006--2841069
531
2.0
531
94
0
1871
31
13
15
39
1.86
2842937--2842985
21
2.3
21
82
6
64
67
0
0
32
0.91
2846610--2846641
16
2.0
16
100
0
64
25
25
18
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2859218--2859259
7
6.0
7
100
0
84
28
14
42
14
1.84
2870817--2870863
3
15.7
3
100
0
94
34
0
0
65
0.93
2871524--2871596
35
2.1
35
89
0
110
36
17
9
35
1.83
2882224--2882351
64
2.0
64
92
3
213
35
8
18
36
1.82
2887741--2887782
14
2.7
16
82
14
52
42
0
2
54
1.13
2888604--2888657
16
3.4
16
89
0
81
25
35
3
35
1.74
2888734--2888773
16
2.5
16
87
0
53
27
2
25
45
1.66
2906134--2906201
31
2.2
31
83
0
82
38
22
20
19
1.94
2915470--2915495
6
4.3
6
100
0
52
38
15
15
30
1.88
2922009--2922089
31
2.7
30
75
3
81
39
13
11
35
1.80
2923100--2923153
27
2.1
25
82
6
63
22
11
3
62
1.43
2931680--2931791
57
2.0
57
83
3
145
58
8
8
25
1.56
2933539--2933565
2
13.5
2
100
0
54
48
0
0
51
1.00
2933765--2933789
6
4.2
6
100
0
50
32
0
16
52
1.44
2950185--2950228
14
3.1
14
80
3
52
56
9
2
31
1.43
2950913--2950965
3
17.7
3
100
0
106
66
0
0
33
0.92
2955565--2955597
13
2.4
14
90
5
50
57
3
0
39
1.14
2955849--2955897
18
2.6
18
87
6
71
24
16
0
59
1.37
2956379--2956412
17
1.9
17
88
5
50
35
0
2
61
1.11
2958593--2958650
24
2.5
22
79
17
64
41
6
3
48
1.47
2967047--2967100
26
2.1
26
82
0
63
35
9
7
48
1.63
2968042--2968069
2
14.0
2
100
0
56
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2968639--2968693
11
5.0
11
80
8
67
38
1
0
60
1.08
2972900--2973045
37
4.0
37
92
1
242
25
21
15
37
1.93
2973009--2973231
52
4.6
46
88
7
266
27
22
14
34
1.93
2973052--2973225
52
3.3
52
91
1
267
27
23
13
35
1.93
2973008--2973231
98
2.3
98
80
9
253
27
23
14
34
1.93
2976074--2976139
14
4.8
13
71
12
51
22
18
4
54
1.61
2976089--2976165
28
2.8
28
82
3
86
24
16
2
55
1.54
2976264--2976368
52
2.0
52
88
3
158
39
1
9
49
1.46
2980478--2980526
6
8.2
6
100
0
98
51
16
0
32
1.45
2982130--2982160
13
2.4
13
94
0
53
67
3
12
16
1.35
2982927--2982994
31
2.3
28
82
10
82
48
1
1
48
1.19
2986418--2986472
21
2.6
21
97
0
101
23
9
38
29
1.85
2990320--2990709
30
12.6
30
77
13
382
40
9
0
50
1.39
2990376--2990403
2
14.0
2
100
0
56
50
0
0
50
1.00
2990464--2990512
24
2.1
23
92
7
82
46
12
0
40
1.41
2990403--2990709
31
10.3
30
84
9
405
39
9
0
49
1.40
2990737--2990777
16
2.5
16
84
4
55
9
56
2
31
1.45
2990749--2990931
60
3.1
60
79
11
232
14
48
4
31
1.65
2990815--2990914
28
3.4
28
70
15
94
11
51
6
32
1.62
2993635--2993697
21
3.1
20
77
8
65
53
15
26
3
1.57
2993658--2993694
19
1.9
19
88
0
56
51
18
27
2
1.60
2995541--2995602
13
4.8
13
83
0
79
35
6
20
37
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2997651--2997825
72
2.4
73
82
6
230
53
13
6
26
1.64
2998250--2998297
18
2.7
18
96
0
87
43
12
8
35
1.73
3000773--3000845
25
2.9
25
85
0
101
50
23
20
5
1.69
3001254--3001344
44
2.0
46
87
6
132
54
4
1
39
1.27
3003017--3003110
26
3.8
24
74
14
84
23
23
19
34
1.97
3003275--3003318
20
2.2
20
83
0
52
25
6
22
45
1.77
3022742--3022824
41
2.0
41
97
0
157
38
33
4
22
1.76
3022742--3022807
23
3.1
23
64
20
61
36
36
4
22
1.75
3024709--3025206
183
2.6
184
90
4
748
44
14
16
24
1.85
3025085--3025109
12
2.1
12
100
0
50
52
8
8
32
1.60
3025682--3025731
3
16.7
3
78
0
55
36
36
0
28
1.58
3031636--3031681
3
15.3
3
95
0
83
32
2
0
65
1.05
3037469--3037541
33
2.2
33
85
4
94
34
45
1
19
1.59
3040077--3040101
6
4.2
6
100
0
50
52
0
0
48
1.00
3049311--3049340
14
2.1
14
93
0
51
40
13
3
43
1.60
3050976--3051249
41
6.7
41
86
2
372
17
21
27
33
1.96
3051955--3051995
7
5.9
7
82
0
55
21
0
48
29
1.50
3051952--3052003
21
2.4
21
87
3
77
21
0
48
30
1.51
3051947--3052043
7
13.9
7
71
16
51
20
1
42
36
1.59
3052133--3052214
38
2.2
38
100
0
164
41
2
12
43
1.55
3054741--3054847
40
2.7
39
81
7
135
19
21
26
32
1.97
3055089--3055302
42
5.3
40
83
10
283
24
19
26
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3055089--3055319
82
2.9
82
94
1
396
22
19
25
32
1.97
3055324--3055908
100
5.9
99
81
5
633
26
21
21
31
1.98
3055320--3055902
199
2.9
199
88
1
846
26
20
21
30
1.98
3055324--3055901
50
11.6
50
68
5
231
26
20
21
31
1.98
3055908--3056230
44
7.5
43
73
11
270
31
26
16
25
1.96
3055960--3056199
125
1.9
125
93
0
408
29
26
17
27
1.97
3056397--3056437
16
2.7
15
85
7
64
31
2
21
43
1.66
3059081--3059205
62
2.0
62
92
0
205
29
8
23
38
1.85
3061356--3061430
31
2.5
29
77
12
80
65
2
5
26
1.27
3061524--3061552
2
14.5
2
100
0
58
51
0
0
48
1.00
3065534--3065563
14
2.1
14
93
0
51
30
6
13
50
1.67
3065777--3065895
43
2.8
43
90
0
184
26
19
29
25
1.98
3082681--3082719
19
2.0
20
90
5
62
58
2
2
35
1.25
3082945--3082999
18
2.9
18
76
15
58
29
7
14
49
1.70
3087980--3088011
15
2.1
16
88
11
50
31
0
0
68
0.90
3088647--3088701
4
13.8
4
100
0
110
25
0
25
49
1.51
3092817--3092856
19
2.2
18
86
4
53
40
5
0
55
1.22
3099231--3099265
18
2.1
18
89
10
56
34
0
0
65
0.93
3103810--3103856
17
2.8
17
87
9
69
65
2
0
31
1.04
3103814--3103846
8
4.1
8
88
11
50
66
0
0
33
0.92
3113265--3113309
3
15.0
3
100
0
90
66
0
0
33
0.92
3119339--3119363
2
12.5
2
100
0
50
48
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3121497--3121523
7
3.9
7
100
0
54
40
44
0
14
1.46
3122378--3122422
24
2.0
22
86
8
63
24
8
6
60
1.51
3124955--3124996
22
1.9
22
85
0
57
19
28
30
21
1.97
3126428--3126469
20
2.0
20
82
13
50
35
2
26
35
1.70
3127516--3127569
2
27.0
2
96
0
99
1
50
0
48
1.11
3132871--3132926
27
2.0
28
86
10
80
58
1
3
35
1.26
3138237--3138289
22
2.4
22
90
0
79
30
15
26
28
1.96
3138250--3138299
22
2.3
22
100
0
100
28
18
28
26
1.98
3138330--3138381
25
2.1
25
82
13
63
40
3
0
55
1.18
3138754--3138798
2
23.0
2
95
4
83
48
0
0
51
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198