Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 ID=Chr04-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62178258

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   

This is table  198  of  198  ( 23681 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61992217--61992325
56
2.0
54
82
10
132
60
0
7
31
1.30
61992223--61992354
29
4.6
27
71
18
83
59
0
6
32
1.29
61992487--61992558
36
2.0
37
86
2
101
33
4
2
59
1.31
61992553--61992602
24
2.0
26
84
7
68
38
0
2
60
1.09
62005690--62005722
12
2.7
12
95
4
57
54
15
0
30
1.41
62007054--62007591
182
3.0
182
99
0
1049
41
22
11
24
1.87
62010964--62011044
11
7.8
11
74
17
68
58
0
2
39
1.12
62010964--62011053
30
2.9
30
91
6
137
58
0
2
38
1.10
62013551--62014020
120
3.9
120
94
1
818
43
1
4
50
1.32
62013557--62014011
241
1.9
240
95
1
831
43
1
4
50
1.31
62013966--62014000
18
2.0
17
88
5
52
45
0
0
54
0.99
62014190--62014227
19
2.0
19
100
0
76
31
21
0
47
1.51
62026801--62026832
16
2.0
16
93
0
55
34
6
34
25
1.81
62060314--62060380
33
2.0
33
97
0
125
47
13
10
28
1.75
62066717--62066763
24
2.0
24
83
8
60
55
0
2
42
1.12
62071353--62071400
2
24.0
2
100
0
96
50
0
50
0
1.00
62078190--62078226
14
2.6
14
95
0
65
43
0
21
35
1.53
62080087--62080128
21
2.0
21
100
0
84
52
14
19
14
1.75
62081253--62081288
17
2.1
17
89
5
54
19
2
11
66
1.35
62081379--62081474
47
2.0
47
97
0
183
42
4
5
47
1.45
62081805--62081842
8
4.8
8
81
12
51
0
13
0
86
0.56
62085608--62085731
58
2.1
58
88
2
178
43
0
3
53
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62085846--62085883
16
2.4
16
95
0
67
34
26
0
39
1.57
62085951--62085996
24
1.9
24
90
0
74
39
4
8
47
1.54
62089660--62089696
9
4.1
9
92
0
65
45
13
10
29
1.77
62089732--62089774
21
2.0
21
82
8
52
20
37
0
41
1.53
62094652--62095266
306
2.0
304
98
0
1185
28
14
18
38
1.90
62103064--62103114
26
2.1
26
85
10
72
35
5
7
50
1.55
62106439--62106498
30
2.1
28
85
11
79
33
18
1
46
1.59
62120265--62120416
75
2.0
75
100
0
304
32
18
20
28
1.96
62122277--62122489
46
4.7
45
80
8
202
17
16
14
51
1.76
62122277--62122529
137
1.8
137
81
3
312
18
17
13
49
1.79
62131925--62131963
20
2.0
20
90
10
62
53
5
20
20
1.64
62133113--62133139
14
1.9
14
100
0
54
22
33
14
29
1.94
62134833--62134857
13
1.9
13
100
0
50
8
0
24
68
1.16
62136045--62136074
2
15.0
2
100
0
60
50
0
0
50
1.00
62136459--62136512
27
2.0
27
100
0
108
22
22
33
22
1.97
62136461--62136518
27
2.1
27
93
0
98
25
18
31
24
1.98
62136486--62136671
41
4.5
41
91
0
309
27
19
28
24
1.98
62137839--62137864
4
6.5
4
100
0
52
23
0
0
76
0.78
62174862--62174920
18
3.1
18
76
21
66
11
15
20
52
1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198

The End!